BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0378.p (258 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001417660.1| binding-protein-dependent transport systems ... 361 7e-98 ref|YP_002008040.1| dipeptide transport protein 2 (ABC superfami... 345 3e-93 ref|YP_003451107.1| peptide/nickel transport system permease pro... 323 2e-86 ref|YP_001238629.1| putative dipeptide transport system permease... 304 7e-81 ref|ZP_06897521.1| oligopeptide ABC superfamily ATP binding cass... 298 8e-79 >ref|YP_001417660.1| binding-protein-dependent transport systems inner membrane component [Xanthobacter autotrophicus Py2] gb|ABS68003.1| binding-protein-dependent transport systems inner membrane component [Xanthobacter autotrophicus Py2] Length = 297 Score = 361 bits (926), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 177/258 (68%), Positives = 218/258 (84%) Query: 1 VLLLLVVLMALSSPLLFPGDPLDMVAEPFLHPGVDAAHLLGSDMLGRDLLSGIFHGARVS 60 ++ L++ MA S+ +++P DPLDMVA+PFL PG AA+ LG+DMLGRD+ SGIFHGARVS Sbjct: 39 IIFALIIAMAASADMVYPDDPLDMVAQPFLWPGQHAAYPLGTDMLGRDIASGIFHGARVS 98 Query: 61 LLIAVVSTLLALVLGISGGLLAGYYGGLADAVLMRVTEFFQTIPSFLFALAIVAVVQPNL 120 LLI V+TL++LV+G++ G ++GYYGG DA LMRVTE FQT+P FLFALAIVA++QP++ Sbjct: 99 LLIGAVATLVSLVIGVTTGAVSGYYGGRVDAGLMRVTELFQTVPPFLFALAIVAILQPSI 158 Query: 121 ATIALAIGVTAWPSLARLVRAEVLKLRHSEMVQASAALGATDLRIMLRDILPNTLTPILV 180 TI AIG+TAWPSLARLVRAEVLKLRH EMV AS ALGA+D RI+L ILPNTL P++V Sbjct: 159 PTITFAIGITAWPSLARLVRAEVLKLRHGEMVAASIALGASDARIILLHILPNTLAPVIV 218 Query: 181 STSLMVATAILTESSLAFLGLGDPNAVSWGNMVGSGREVIRTDWYITTIPGIAIVITVLA 240 S S++VA+AILTESSLAFLGLGDPN VSWG MVG+GREV+RTDWY+ T+PG+AIV VLA Sbjct: 219 SASILVASAILTESSLAFLGLGDPNVVSWGGMVGAGREVLRTDWYVATVPGLAIVAAVLA 278 Query: 241 LNLLGDGLADVLDPRDRK 258 LNLLGDGL D L+P+ + Sbjct: 279 LNLLGDGLNDALNPKGAR 296 >ref|YP_002008040.1| dipeptide transport protein 2 (ABC superfamily, membrane) [Cupriavidus taiwanensis LMG 19424] emb|CAQ71984.1| dipeptide transport protein 2 (ABC superfamily, membrane) [Cupriavidus taiwanensis LMG 19424] Length = 285 Score = 345 bits (886), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 173/243 (71%), Positives = 205/243 (84%) Query: 16 LFPGDPLDMVAEPFLHPGVDAAHLLGSDMLGRDLLSGIFHGARVSLLIAVVSTLLALVLG 75 +FP DPL+M EP L PG DAA LGSDMLGRD+L+G+FHGAR SLLIA VST LA+VLG Sbjct: 43 VFPADPLEMATEPLLWPGRDAAFPLGSDMLGRDILAGLFHGARASLLIAGVSTALAVVLG 102 Query: 76 ISGGLLAGYYGGLADAVLMRVTEFFQTIPSFLFALAIVAVVQPNLATIALAIGVTAWPSL 135 ++GG+ AGY+GG AD + +T FF TIPSFLFALAIVAVVQP++ IALAIG+T+WP+L Sbjct: 103 VAGGVTAGYFGGRADRLFGTLTTFFLTIPSFLFALAIVAVVQPSVWKIALAIGITSWPAL 162 Query: 136 ARLVRAEVLKLRHSEMVQASAALGATDLRIMLRDILPNTLTPILVSTSLMVATAILTESS 195 RLVRAEVL+LRH +MV AS A+GA+ RI++ DILPNTLTP+LVS SLMVATAILTESS Sbjct: 163 GRLVRAEVLRLRHGDMVLASEAVGASHARIIIEDILPNTLTPVLVSASLMVATAILTESS 222 Query: 196 LAFLGLGDPNAVSWGNMVGSGREVIRTDWYITTIPGIAIVITVLALNLLGDGLADVLDPR 255 LAFLGL DPN SWGNMVG+GREV+RTDWY+ +PG+AIV+TVLALNLLGDGLA DPR Sbjct: 223 LAFLGLADPNVASWGNMVGAGREVLRTDWYVCALPGLAIVLTVLALNLLGDGLATAFDPR 282 Query: 256 DRK 258 + + Sbjct: 283 EGR 285 >ref|YP_003451107.1| peptide/nickel transport system permease protein [Azospirillum sp. B510] dbj|BAI74563.1| peptide/nickel transport system permease protein [Azospirillum sp. B510] Length = 293 Score = 323 bits (827), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 167/258 (64%), Positives = 204/258 (79%) Query: 1 VLLLLVVLMALSSPLLFPGDPLDMVAEPFLHPGVDAAHLLGSDMLGRDLLSGIFHGARVS 60 +LL ++ MA + + FPGDPLDM P L PG A LG+DM+GRDL SGIFHGARVS Sbjct: 35 ILLAGILAMAGFADIAFPGDPLDMAGMPLLRPGDAAEFALGTDMMGRDLASGIFHGARVS 94 Query: 61 LLIAVVSTLLALVLGISGGLLAGYYGGLADAVLMRVTEFFQTIPSFLFALAIVAVVQPNL 120 LLI V+ L++LV+GI G LAGYYGG D LMRVTE FQTIP FLF LA+VA++QP++ Sbjct: 95 LLIGGVAALVSLVIGIGIGALAGYYGGRVDRALMRVTELFQTIPPFLFTLALVAILQPSI 154 Query: 121 ATIALAIGVTAWPSLARLVRAEVLKLRHSEMVQASAALGATDLRIMLRDILPNTLTPILV 180 ATI AIG+T+W LARLVRAEVL+LR+SE+ QAS LGA+D RI++ ILPN L P++V Sbjct: 155 ATITTAIGITSWSGLARLVRAEVLRLRNSELAQASIILGASDARIIVLHILPNVLAPVIV 214 Query: 181 STSLMVATAILTESSLAFLGLGDPNAVSWGNMVGSGREVIRTDWYITTIPGIAIVITVLA 240 S S++VATAILTESSL+FLGLGDPN VSWG MVG+GREVIRTD ++ IPG+AIV+ VLA Sbjct: 215 SASILVATAILTESSLSFLGLGDPNVVSWGGMVGAGREVIRTDPHVAAIPGVAIVVAVLA 274 Query: 241 LNLLGDGLADVLDPRDRK 258 LNLLGDGL DVL+ + + Sbjct: 275 LNLLGDGLNDVLNGKGER 292 >ref|YP_001238629.1| putative dipeptide transport system permease [Bradyrhizobium sp. BTAi1] gb|ABQ34723.1| putative dipeptide transport system permease protein [Bradyrhizobium sp. BTAi1] Length = 274 Score = 304 bits (779), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 149/250 (59%), Positives = 198/250 (79%) Query: 6 VVLMALSSPLLFPGDPLDMVAEPFLHPGVDAAHLLGSDMLGRDLLSGIFHGARVSLLIAV 65 VV+MAL + LFPGDP+DMVA PF PG D LGSD++GRDLL+GIFHGARVSLL+ Sbjct: 19 VVVMALLAQRLFPGDPMDMVAVPFTWPGQDETVPLGSDLMGRDLLAGIFHGARVSLLVGA 78 Query: 66 VSTLLALVLGISGGLLAGYYGGLADAVLMRVTEFFQTIPSFLFALAIVAVVQPNLATIAL 125 + +AL +G++ G ++G+YGG ADA L R+TEFFQTIP+FL A+ +VA+++P++ TI L Sbjct: 79 SAATIALTIGVTIGAISGFYGGAADAALGRITEFFQTIPAFLLAVILVAIMRPSIGTIIL 138 Query: 126 AIGVTAWPSLARLVRAEVLKLRHSEMVQASAALGATDLRIMLRDILPNTLTPILVSTSLM 185 A+G+++W +ARLVRAE L LR E V+AS ALGA+DL ++ R+ILPN LTPIL ST ++ Sbjct: 139 ALGISSWTGVARLVRAEFLTLREREFVRASEALGASDLHLITREILPNALTPILASTGIL 198 Query: 186 VATAILTESSLAFLGLGDPNAVSWGNMVGSGREVIRTDWYITTIPGIAIVITVLALNLLG 245 VA AIL+E+ L+FLGLGDPN +SWG+M+G GR+ +RT WY++ IPG AI++TV+ALN L Sbjct: 199 VAQAILSEAGLSFLGLGDPNLISWGSMIGIGRDALRTGWYMSAIPGAAIMLTVVALNFLS 258 Query: 246 DGLADVLDPR 255 DGL VL PR Sbjct: 259 DGLHAVLSPR 268 >ref|ZP_06897521.1| oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein [Roseomonas cervicalis ATCC 49957] gb|EFH10787.1| oligopeptide ABC superfamily ATP binding cassette transporter, membrane protein [Roseomonas cervicalis ATCC 49957] Length = 281 Score = 298 bits (762), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 153/255 (60%), Positives = 196/255 (76%), Gaps = 1/255 (0%) Query: 1 VLLLLVVLMALSSPLLFPGDPLDMVAEPFLHPGVDAAHLLGSDMLGRDLLSGIFHGARVS 60 V+L LV+ +A S+PLLFPG+P DM PF PG + LLG+D LGRDL +GI HGARVS Sbjct: 19 VILALVLAIAASAPLLFPGNPWDMAGMPFAPPG-EMGMLLGTDSLGRDLAAGIAHGARVS 77 Query: 61 LLIAVVSTLLALVLGISGGLLAGYYGGLADAVLMRVTEFFQTIPSFLFALAIVAVVQPNL 120 LL+ VST+ AL +G+S G +AGY GGLAD ++MR TEFFQTIPSF+ A+ IVA+ P L Sbjct: 78 LLVGAVSTVAALAIGVSLGAIAGYLGGLADDLVMRFTEFFQTIPSFVLAILIVAIFTPTL 137 Query: 121 ATIALAIGVTAWPSLARLVRAEVLKLRHSEMVQASAALGATDLRIMLRDILPNTLTPILV 180 +I AI + +WP +AR+VRAE L LR E VQAS LG + L I+L DILPN L+PI+V Sbjct: 138 GSIVFAIAIVSWPPVARVVRAEFLSLRSREFVQASEVLGKSRLSIVLGDILPNALSPIVV 197 Query: 181 STSLMVATAILTESSLAFLGLGDPNAVSWGNMVGSGREVIRTDWYITTIPGIAIVITVLA 240 +SLMVA+AIL ES+L+FLGLGDPN +SWG ++GSGR VIR W+++ PGIAI +TVL+ Sbjct: 198 LSSLMVASAILLESALSFLGLGDPNTMSWGFLIGSGRSVIRIAWWMSVFPGIAIFLTVLS 257 Query: 241 LNLLGDGLADVLDPR 255 LNL+G+GL+D L+PR Sbjct: 258 LNLVGEGLSDALNPR 272