BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0373.p (288 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004380522.1| ABC transporter permease [Pseudomonas mendoc... 472 e-131 ref|YP_003773493.1| nitrate/sulfonate/bicarbonate ABC transporte... 469 e-130 ref|YP_345873.1| binding-protein dependent transport system inne... 449 e-124 ref|YP_004474468.1| binding-protein-dependent transport systems ... 449 e-124 ref|YP_002800229.1| ABC transporter permease [Azotobacter vinela... 448 e-124 >ref|YP_004380522.1| ABC transporter permease [Pseudomonas mendocina NK-01] gb|AEB58770.1| ABC transporter, permease protein [Pseudomonas mendocina NK-01] Length = 288 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 239/288 (82%), Positives = 261/288 (90%) Query: 1 MSISPPIRDEYEIALTPLDDVPLERTLSLPQRIWQQSWVRKAAILLVLALIWEIIARIQD 60 MS+SP RD+YEIAL PL D+ LER L L QR+WQQSW+RK ILLVLALIWE+ AR Q Sbjct: 1 MSLSPARRDDYEIALQPLPDLKLERELPLLQRLWQQSWLRKTLILLVLALIWELAARYQG 60 Query: 61 NDLLLPSFAQTAHAFADGVITGELIGKVWISLKVLVKGYLIGIALAFALTTLAVSTQLGR 120 NDLLLPSF QTA AF +G+ +GEL+ KV ISL VLVKGYL+GI LAF LTTLAVSTQLGR Sbjct: 61 NDLLLPSFVQTAKAFVEGIGSGELLEKVAISLSVLVKGYLLGIGLAFLLTTLAVSTQLGR 120 Query: 121 DLLSTLTSMFNPLPAIAMLPLALLWFGLGENSLIFVLVHSVLWALALNTYAGFLGVSDTL 180 DLLSTLTSMFNPLPAIA+LPL+LLWFGLGENSLIFVLVHSVLWALALNTYAGFLGVS+T Sbjct: 121 DLLSTLTSMFNPLPAIALLPLSLLWFGLGENSLIFVLVHSVLWALALNTYAGFLGVSETQ 180 Query: 181 RMAGRNYGLRGLRFVLFMLVPAALPSILAGLRIGWAFAWRTLIAAELVFGASSGKGGLGW 240 RMAGRNYGLRGLRFVLF+L+PAALPSIL+GL+IGWAFAWRTLIAAELVFGASSGKGGLGW Sbjct: 181 RMAGRNYGLRGLRFVLFILIPAALPSILSGLKIGWAFAWRTLIAAELVFGASSGKGGLGW 240 Query: 241 YIFQNRNELYTDKVFAGLAMVILIGLVVENFGFNTIEKLTVKRWGMQR 288 YIFQNRNELYTDKVFAGLA VILIGL+VEN F T+E++TVKRWGMQR Sbjct: 241 YIFQNRNELYTDKVFAGLAAVILIGLLVENLVFATVERVTVKRWGMQR 288 >ref|YP_003773493.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61585.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 469 bits (1207), Expect = e-130, Method: Compositional matrix adjust. Identities = 234/288 (81%), Positives = 261/288 (90%) Query: 1 MSISPPIRDEYEIALTPLDDVPLERTLSLPQRIWQQSWVRKAAILLVLALIWEIIARIQD 60 M+ +PPIRDEYEI LTPL + L+R SLPQR+WQQ WVRK AILL+LAL+WE +AR Q+ Sbjct: 1 MAQTPPIRDEYEIPLTPLPGLVLQRQFSLPQRLWQQGWVRKGAILLLLALVWEGVARWQN 60 Query: 61 NDLLLPSFAQTAHAFADGVITGELIGKVWISLKVLVKGYLIGIALAFALTTLAVSTQLGR 120 NDLLLPSF QTA AF DG+ +GEL GK W+SL+VL+K Y++GI AFALTTLAVSTQ GR Sbjct: 61 NDLLLPSFLQTAQAFIDGLRSGELFGKTWLSLQVLLKAYVLGIVAAFALTTLAVSTQFGR 120 Query: 121 DLLSTLTSMFNPLPAIAMLPLALLWFGLGENSLIFVLVHSVLWALALNTYAGFLGVSDTL 180 DLL TLTSMFNPLPAIA+LP+ALLWFGLG+ SLIFVLVHSVLWALA+NTYAGFLGVSDTL Sbjct: 121 DLLGTLTSMFNPLPAIALLPIALLWFGLGQGSLIFVLVHSVLWALAVNTYAGFLGVSDTL 180 Query: 181 RMAGRNYGLRGLRFVLFMLVPAALPSILAGLRIGWAFAWRTLIAAELVFGASSGKGGLGW 240 RMAGRNYGLRGL FVL +LVPAALPSILAGLRIGWAFAWRTLIAAELVFGA+SGKGGLGW Sbjct: 181 RMAGRNYGLRGLGFVLQVLVPAALPSILAGLRIGWAFAWRTLIAAELVFGATSGKGGLGW 240 Query: 241 YIFQNRNELYTDKVFAGLAMVILIGLVVENFGFNTIEKLTVKRWGMQR 288 YIFQNRNELYTDKVFAGLAMVILIGL+VEN FNT+E++TVK+WGMQR Sbjct: 241 YIFQNRNELYTDKVFAGLAMVILIGLLVENLVFNTLERVTVKKWGMQR 288 >ref|YP_345873.1| binding-protein dependent transport system inner membrane protein [Pseudomonas fluorescens Pf0-1] gb|ABA71884.1| putative ABC transport system, permease [Pseudomonas fluorescens Pf0-1] Length = 288 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 231/288 (80%), Positives = 267/288 (92%) Query: 1 MSISPPIRDEYEIALTPLDDVPLERTLSLPQRIWQQSWVRKAAILLVLALIWEIIARIQD 60 MS S +R E+E L PL VP+ER L L QR+WQQ W+RK+ IL++LA++WE++AR+Q+ Sbjct: 1 MSHSSSVRQEFENDLQPLTSVPVERELPLGQRLWQQGWLRKSVILILLAVLWEVVARVQN 60 Query: 61 NDLLLPSFAQTAHAFADGVITGELIGKVWISLKVLVKGYLIGIALAFALTTLAVSTQLGR 120 NDLLLPSF QT+HA DG+++GEL+GKVWISL VL+KGYLIGI LAFALTTLAVSTQ+GR Sbjct: 61 NDLLLPSFLQTSHALYDGLLSGELLGKVWISLVVLIKGYLIGIVLAFALTTLAVSTQVGR 120 Query: 121 DLLSTLTSMFNPLPAIAMLPLALLWFGLGENSLIFVLVHSVLWALALNTYAGFLGVSDTL 180 DLLSTLTSMFNPLPAIA+LPLALLWFGLG+NSLIFVLVHSVLWALALNTYAGFLGVS+TL Sbjct: 121 DLLSTLTSMFNPLPAIALLPLALLWFGLGQNSLIFVLVHSVLWALALNTYAGFLGVSETL 180 Query: 181 RMAGRNYGLRGLRFVLFMLVPAALPSILAGLRIGWAFAWRTLIAAELVFGASSGKGGLGW 240 RMAGRNYGL+G+RFVLF+L+PAALPSILAGL+IGWAFAWRTLIAAELVFGA+SGKGGLGW Sbjct: 181 RMAGRNYGLKGMRFVLFILIPAALPSILAGLKIGWAFAWRTLIAAELVFGATSGKGGLGW 240 Query: 241 YIFQNRNELYTDKVFAGLAMVILIGLVVENFGFNTIEKLTVKRWGMQR 288 YIFQNRNELYTDKVFAGLA+VILIGL+VEN F+T+E++TVKRWGMQR Sbjct: 241 YIFQNRNELYTDKVFAGLAVVILIGLLVENLVFDTLERVTVKRWGMQR 288 >ref|YP_004474468.1| binding-protein-dependent transport systems inner membrane component [Pseudomonas fulva 12-X] gb|AEF22374.1| binding-protein-dependent transport systems inner membrane component [Pseudomonas fulva 12-X] Length = 288 Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust. Identities = 234/288 (81%), Positives = 257/288 (89%) Query: 1 MSISPPIRDEYEIALTPLDDVPLERTLSLPQRIWQQSWVRKAAILLVLALIWEIIARIQD 60 MS+SP R+EYEI L PL + LER LSL QR+WQQ W+RK+ ILL LALIWE AR Q Sbjct: 1 MSLSPARREEYEIPLQPLPGLKLERELSLGQRLWQQGWLRKSLILLALALIWEAAARYQA 60 Query: 61 NDLLLPSFAQTAHAFADGVITGELIGKVWISLKVLVKGYLIGIALAFALTTLAVSTQLGR 120 NDLLLPSF QTA AF +G+ +GEL+ KV ISL VLVKGYLIGI LAF LT+LAVSTQLGR Sbjct: 61 NDLLLPSFLQTARAFVEGIGSGELLEKVAISLSVLVKGYLIGIVLAFLLTSLAVSTQLGR 120 Query: 121 DLLSTLTSMFNPLPAIAMLPLALLWFGLGENSLIFVLVHSVLWALALNTYAGFLGVSDTL 180 DLLSTLTSMFNPLPAIA+LPL+LLWFGLGENSLIFVLVHSVLWALALNTYAGFLGVS+T Sbjct: 121 DLLSTLTSMFNPLPAIALLPLSLLWFGLGENSLIFVLVHSVLWALALNTYAGFLGVSETQ 180 Query: 181 RMAGRNYGLRGLRFVLFMLVPAALPSILAGLRIGWAFAWRTLIAAELVFGASSGKGGLGW 240 RMAGRNYGL+GLRFVLF+L+PAALPSIL+GL+IGWAFAWRTLIAAELVFGASSGKGGLGW Sbjct: 181 RMAGRNYGLKGLRFVLFILIPAALPSILSGLKIGWAFAWRTLIAAELVFGASSGKGGLGW 240 Query: 241 YIFQNRNELYTDKVFAGLAMVILIGLVVENFGFNTIEKLTVKRWGMQR 288 YIFQNRNELYTDKVFAGL VILIGL+VEN F +IE++TVKRWGMQR Sbjct: 241 YIFQNRNELYTDKVFAGLVAVILIGLLVENLIFASIERVTVKRWGMQR 288 >ref|YP_002800229.1| ABC transporter permease [Azotobacter vinelandii DJ] gb|ACO79254.1| ABC transporter, permease protein [Azotobacter vinelandii DJ] Length = 288 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/288 (77%), Positives = 255/288 (88%) Query: 1 MSISPPIRDEYEIALTPLDDVPLERTLSLPQRIWQQSWVRKAAILLVLALIWEIIARIQD 60 MS +PP+R EYEIAL PL D+PLER LSL QR+WQQ+W+RK+ IL+ LAL+WE+ AR+Q Sbjct: 1 MSQTPPLRPEYEIALQPLTDLPLERELSLAQRLWQQAWLRKSLILMTLALLWEVAARLQG 60 Query: 61 NDLLLPSFAQTAHAFADGVITGELIGKVWISLKVLVKGYLIGIALAFALTTLAVSTQLGR 120 NDLLLPSF Q A A + + +GEL+ KV ISL VLVKGYLIGI LAF LT+LAVS+QLGR Sbjct: 61 NDLLLPSFLQVARALVEDLASGELLEKVAISLSVLVKGYLIGILLAFVLTSLAVSSQLGR 120 Query: 121 DLLSTLTSMFNPLPAIAMLPLALLWFGLGENSLIFVLVHSVLWALALNTYAGFLGVSDTL 180 DLLSTLT+MFNPLPAIA+LP+ALLWFGLGE SLIFVLVHSVLW+LALNTYAGFLGV +T Sbjct: 121 DLLSTLTAMFNPLPAIALLPVALLWFGLGEGSLIFVLVHSVLWSLALNTYAGFLGVPETQ 180 Query: 181 RMAGRNYGLRGLRFVLFMLVPAALPSILAGLRIGWAFAWRTLIAAELVFGASSGKGGLGW 240 RM GRNYGLRGLRFV +LVPAALPSIL+GL+IGWAFAWRTL+AAELVFGASSG+GGLGW Sbjct: 181 RMVGRNYGLRGLRFVALILVPAALPSILSGLKIGWAFAWRTLVAAELVFGASSGQGGLGW 240 Query: 241 YIFQNRNELYTDKVFAGLAMVILIGLVVENFGFNTIEKLTVKRWGMQR 288 YIFQNRNELYTDKVFAGLA+VILIGL+VE+ F +E+ TV+RWGMQR Sbjct: 241 YIFQNRNELYTDKVFAGLAVVILIGLLVESLVFALLERYTVRRWGMQR 288