BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0371.p         (188 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC transporte...   333   7e-90
ref|YP_004153369.1| nitrate/sulfonate/bicarbonate ABC transporte...   331   3e-89
ref|YP_004236556.1| nitrate/sulfonate/bicarbonate ABC transporte...   298   2e-79
ref|ZP_08405761.1| nitrate/sulfonate/bicarbonate ABC transporter...   295   2e-78
ref|ZP_02355741.1| ABC transporter substrate binding protein [Bu...   293   6e-78

>ref|YP_003773495.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ61587.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
           periplasmic component protein [Herbaspirillum
           seropedicae SmR1]
          Length = 342

 Score =  333 bits (854), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 158/188 (84%), Positives = 170/188 (90%)

Query: 1   VQSRVLQLASAKQWGDAQYNKLDKISVAVPHPDAAAAIINGGTEISAHFGNPPFQDQELA 60
           VQSRVLQLASAK WGDAQYN+LDKIS+AVPHPDA AAII+GGTEI+ HFGNPPFQ+QELA
Sbjct: 155 VQSRVLQLASAKLWGDAQYNRLDKISIAVPHPDATAAIISGGTEITGHFGNPPFQEQELA 214

Query: 61  GNPKAHIVLNSYQVLGGPSSATVLYATEKFRKDNPKTYKAFLDALDEAAKFIAANPDKAA 120
           GNP AHIVL SY VLGGPSSATVLYATEKFRKDNPKTY+AFLDAL+E A FI ANPDKAA
Sbjct: 215 GNPNAHIVLKSYDVLGGPSSATVLYATEKFRKDNPKTYRAFLDALEETASFIRANPDKAA 274

Query: 121 DTYIRVSNAKIDRNLLLKIIKNPEVQFKIAPQNTYPLAEFMHRVGAIKNKPASVKDYFFD 180
           D Y++V+    DR LLL+IIKNPEVQFKIAPQNTY LAEFMHRVGAIKNKPASVKDYFFD
Sbjct: 275 DIYLKVNKGNTDRKLLLQIIKNPEVQFKIAPQNTYGLAEFMHRVGAIKNKPASVKDYFFD 334

Query: 181 DAHINGGS 188
           D H+ GGS
Sbjct: 335 DPHVQGGS 342


>ref|YP_004153369.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
           [Variovorax paradoxus EPS]
 gb|ADU35258.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
           [Variovorax paradoxus EPS]
          Length = 336

 Score =  331 bits (848), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 155/183 (84%), Positives = 169/183 (92%)

Query: 1   VQSRVLQLASAKQWGDAQYNKLDKISVAVPHPDAAAAIINGGTEISAHFGNPPFQDQELA 60
           VQSRVLQ ASAK WGD ++N+LDKISVA+PHPDAAAAII GGTEI+ HFGNPPFQ+QELA
Sbjct: 149 VQSRVLQFASAKLWGDKEFNRLDKISVAIPHPDAAAAIIKGGTEITGHFGNPPFQEQELA 208

Query: 61  GNPKAHIVLNSYQVLGGPSSATVLYATEKFRKDNPKTYKAFLDALDEAAKFIAANPDKAA 120
           GNP AHIVLNSYQVLGGP+SATVLYATEKFR +NPKTYKAF+DALDEAAKF+ ANP+KAA
Sbjct: 209 GNPNAHIVLNSYQVLGGPASATVLYATEKFRNENPKTYKAFVDALDEAAKFVTANPEKAA 268

Query: 121 DTYIRVSNAKIDRNLLLKIIKNPEVQFKIAPQNTYPLAEFMHRVGAIKNKPASVKDYFFD 180
           D Y++VSNAK+DR LLLKIIKNPEVQFK  PQNTY LAEFMHRVGAIKNKPASVKDYFFD
Sbjct: 269 DIYLKVSNAKLDRELLLKIIKNPEVQFKTTPQNTYALAEFMHRVGAIKNKPASVKDYFFD 328

Query: 181 DAH 183
           DA 
Sbjct: 329 DAQ 331


>ref|YP_004236556.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic
           ligand-binding protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gb|ADX47989.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic
           ligand-binding protein [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 353

 Score =  298 bits (764), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 140/188 (74%), Positives = 163/188 (86%)

Query: 1   VQSRVLQLASAKQWGDAQYNKLDKISVAVPHPDAAAAIINGGTEISAHFGNPPFQDQELA 60
           VQSRVLQ ASAK WGD ++N+LDKI VAVPHPDAAAAII GGTEI+ HFGNPPFQ+QELA
Sbjct: 166 VQSRVLQFASAKLWGDKEFNRLDKIQVAVPHPDAAAAIIKGGTEITGHFGNPPFQEQELA 225

Query: 61  GNPKAHIVLNSYQVLGGPSSATVLYATEKFRKDNPKTYKAFLDALDEAAKFIAANPDKAA 120
           GNP A IVLNSY VLGGP+SATVLYATEKFRK++PKTY+AFL  L +AA+F+AANP+KAA
Sbjct: 226 GNPNARIVLNSYDVLGGPASATVLYATEKFRKESPKTYQAFLAGLHDAAQFVAANPEKAA 285

Query: 121 DTYIRVSNAKIDRNLLLKIIKNPEVQFKIAPQNTYPLAEFMHRVGAIKNKPASVKDYFFD 180
           D Y++V+ AK DR LLLKII+NPEVQFK+ P+NT  L +F+HRVGAIKNKP ++KDYFFD
Sbjct: 286 DIYLKVTGAKTDRALLLKIIRNPEVQFKVQPENTLGLGQFLHRVGAIKNKPEALKDYFFD 345

Query: 181 DAHINGGS 188
           DA    GS
Sbjct: 346 DALTARGS 353


>ref|ZP_08405761.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic
           ligand-binding protein [Hylemonella gracilis ATCC 19624]
 gb|EGI77200.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic
           ligand-binding protein [Hylemonella gracilis ATCC 19624]
          Length = 331

 Score =  295 bits (755), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 134/188 (71%), Positives = 167/188 (88%), Gaps = 2/188 (1%)

Query: 1   VQSRVLQLASAKQWGDAQYNKLDKISVAVPHPDAAAAIINGGTEISAHFGNPPFQDQELA 60
           VQSRVLQ ASAK WGD ++N+LDK+ VA+PHP+AAAAII+GGTEI+AHFGNPPFQ+QELA
Sbjct: 146 VQSRVLQFASAKLWGDKEFNRLDKLQVALPHPEAAAAIISGGTEITAHFGNPPFQEQELA 205

Query: 61  GNPKAHIVLNSYQVLGGPSSATVLYATEKFRKDNPKTYKAFLDALDEAAKFIAANPDKAA 120
           GNPKA IVLNSY VLGGP+SAT+LYATEKFR ++PKTY+AF++ALDEAA+FIA NP++AA
Sbjct: 206 GNPKARIVLNSYDVLGGPASATLLYATEKFRAESPKTYRAFVNALDEAAQFIARNPEQAA 265

Query: 121 DTYIRVSNAKIDRNLLLKIIKNPEVQFKIAPQNTYPLAEFMHRVGAIKNKPASVKDYFFD 180
           D Y++ +  K+DR LLLKI++NPEVQFK  PQNT  L +F++RVGAIKN+P ++ DYFFD
Sbjct: 266 DIYLKTN--KVDRALLLKIVRNPEVQFKTTPQNTLGLGQFLYRVGAIKNEPKTITDYFFD 323

Query: 181 DAHINGGS 188
           DAH+ GG+
Sbjct: 324 DAHVKGGN 331


>ref|ZP_02355741.1| ABC transporter substrate binding protein [Burkholderia
           oklahomensis EO147]
          Length = 343

 Score =  293 bits (751), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 134/188 (71%), Positives = 166/188 (88%), Gaps = 1/188 (0%)

Query: 1   VQSRVLQLASAKQWGDAQYNKLDKISVAVPHPDAAAAIINGGTEISAHFGNPPFQDQELA 60
           VQSRVLQ A+A++WGD  Y++LDK++ AVPHPDAAAA+I GGTEISAHFGNPPFQ+QELA
Sbjct: 156 VQSRVLQFAAAQRWGDRAYDRLDKLTQAVPHPDAAAAVIAGGTEISAHFGNPPFQEQELA 215

Query: 61  GNPKAHIVLNSYQVLGGPSSATVLYATEKFRKDNPKTYKAFLDALDEAAKFIAANPDKAA 120
           GNP AH+VL+SY VLGGPSS+TVLYATEKFR+DNPKTY+AF+ AL++AA+++ ANPD A 
Sbjct: 216 GNPNAHVVLSSYDVLGGPSSSTVLYATEKFRRDNPKTYRAFVAALEQAARYVQANPDGAV 275

Query: 121 DTYIRVSNAKIDRNLLLKIIKNPEVQFKIAPQNTYPLAEFMHRVGAIKNKPASVKDYFFD 180
           D Y+RV+ +K DR LLLKI+K+P+VQFKIAPQNT+ LA+FMHRVGAI+N+P + +DYFFD
Sbjct: 276 DAYLRVNRSKADRALLLKIVKDPQVQFKIAPQNTFALAQFMHRVGAIRNEPKTWRDYFFD 335

Query: 181 D-AHINGG 187
           D A   GG
Sbjct: 336 DPATAQGG 343