BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0369.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001352094.1| transporter of the DMT superfamily [Janthino... 387 e-106 ref|YP_003773504.1| drug/metabolite transporter (DMT) superfamil... 365 4e-99 ref|YP_004752116.1| hypothetical protein CFU_1461 [Collimonas fu... 357 1e-96 ref|YP_002981902.1| hypothetical protein Rpic12D_1949 [Ralstonia... 310 1e-82 ref|YP_001899838.1| hypothetical protein Rpic_2272 [Ralstonia pi... 294 1e-77 >ref|YP_001352094.1| transporter of the DMT superfamily [Janthinobacterium sp. Marseille] gb|ABR90615.1| transporter of the DMT superfamily [Janthinobacterium sp. Marseille] Length = 298 Score = 387 bits (995), Expect = e-106, Method: Compositional matrix adjust. Identities = 206/277 (74%), Positives = 245/277 (88%) Query: 1 MSLAVVALVLCAALLHASWNALLKSSGDRLASLTIMTIGAGVGAIPLVLFTPLPHAAAWP 60 MS+ V++LVL AALLHASWNALLKSS D L +L +MTIG+G+ A+PL+L+ PLP +WP Sbjct: 21 MSIFVLSLVLFAALLHASWNALLKSSADPLGALAVMTIGSGLAALPLILYLPLPLPESWP 80 Query: 61 CIILSAILHTGYNLFLIRAYRIGDFSQSYPIARGSSPMLVSIGAAIFVGEQMSIYTWLGV 120 I LSA+LHT YNLFLIRAYRIGDFSQSYPIARGSSP+LV++GAA+ VGEQMS T LGV Sbjct: 81 YIALSAVLHTAYNLFLIRAYRIGDFSQSYPIARGSSPLLVTLGAALLVGEQMSWMTLLGV 140 Query: 121 ALVSIGIISLANIKDRHNLSGPIAAFTTGAFIAAYTVTDGIGARAAGNALAYSGWLFVLD 180 L+S+GIISLA+IK+R +L+GPIAAFTTGAFIAAYT+TDG+GAR AG+AL+Y GWLFVLD Sbjct: 141 ILISVGIISLAHIKNRLHLAGPIAAFTTGAFIAAYTITDGLGARVAGSALSYCGWLFVLD 200 Query: 181 SFPLALIFMWMHRRLPMAAERKQNWLSLAGGVMSLLAYGIVIWAVTLAPMGTVSALRETS 240 S PL LI++ +H+RLPMA K+ W++L GG+MSLLAYGIVIWAVTLAPMGTVSALRETS Sbjct: 201 SVPLLLIYLRLHKRLPMAFGSKETWVALGGGLMSLLAYGIVIWAVTLAPMGTVSALRETS 260 Query: 241 VLFAALIGTLFLGEKLTMRRILACILITLGAIVLGWH 277 VLFAALIG LFLGEKL+MRRIL+C+LIT+GAI+LG H Sbjct: 261 VLFAALIGWLFLGEKLSMRRILSCLLITVGAIILGLH 297 >ref|YP_003773504.1| drug/metabolite transporter (DMT) superfamily permease [Herbaspirillum seropedicae SmR1] gb|ADJ61596.1| permease of the drug/metabolite transporter (DMT) superfamily protein [Herbaspirillum seropedicae SmR1] Length = 281 Score = 365 bits (937), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 184/266 (69%), Positives = 223/266 (83%), Gaps = 3/266 (1%) Query: 16 HASWNALLKSSGDRLASLTIMTIGAGVGAIPLVLFTPLPHAAAWPCIILSAILHTGYNLF 75 HASWNALLKSS DRLASL +MT+GAG+GAIPL+L+ P P A+W IILS +LHTGYNLF Sbjct: 16 HASWNALLKSSHDRLASLALMTLGAGIGAIPLILWRPWPEPASWFYIILSGLLHTGYNLF 75 Query: 76 LIRAYRIGDFSQSYPIARGSSPMLVSIGAAIFVGEQMSIYTWLGVALVSIGIISLANIK- 134 LIRAYRIGDF QSYPIARGSSP+LV++GAA+F GEQ+ +YT +G+ LVS+GI+SLA+++ Sbjct: 76 LIRAYRIGDFGQSYPIARGSSPLLVALGAAVFAGEQLGLYTVIGILLVSLGIVSLADLRA 135 Query: 135 --DRHNLSGPIAAFTTGAFIAAYTVTDGIGARAAGNALAYSGWLFVLDSFPLALIFMWMH 192 R +L+GP+AAF TGAFIAAYT+TDGIGAR AG+A++Y+GWLFVLDS LA+I+ H Sbjct: 136 MRSREHLAGPLAAFATGAFIAAYTITDGIGARLAGDAMSYAGWLFVLDSIALAVIYQRRH 195 Query: 193 RRLPMAAERKQNWLSLAGGVMSLLAYGIVIWAVTLAPMGTVSALRETSVLFAALIGTLFL 252 R P+A R++ W L GGVMSLLAYGIVIWAVTLAPMG VSALRETSVLFA LIG LFL Sbjct: 196 GRWPIALGRRETWTGLGGGVMSLLAYGIVIWAVTLAPMGMVSALRETSVLFALLIGALFL 255 Query: 253 GEKLTMRRILACILITLGAIVLGWHR 278 GE+LT+RR+L+ ++I G IVLG H Sbjct: 256 GERLTLRRVLSGVVIVAGTIVLGTHH 281 >ref|YP_004752116.1| hypothetical protein CFU_1461 [Collimonas fungivorans Ter331] gb|AEK61293.1| conserved hypothetical protein [Collimonas fungivorans Ter331] Length = 286 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 180/284 (63%), Positives = 224/284 (78%), Gaps = 8/284 (2%) Query: 1 MSLAVVALVLCAALLHASWNALLKSSGDRLASLTIMTIGAGVGAIPLVLFTPLPHAAAWP 60 M+ V+ALVLCAALLHASWNA+LKSSGDRL ++T+MTIG+ V +IP+VL+ PLP A+WP Sbjct: 1 MTAGVIALVLCAALLHASWNAMLKSSGDRLWAITLMTIGSAVASIPIVLWAPLPALASWP 60 Query: 61 CIILSAILHTGYNLFLIRAYRIGDFSQSYPIARGSSPMLVSIGAAIFVGEQMSIYTWLGV 120 I++S +LH GYNLFL+RAYR GDF QSYPIARGSSP+LVS+GAA+F GEQ+ I T GV Sbjct: 61 YILMSVVLHAGYNLFLVRAYRAGDFGQSYPIARGSSPLLVSLGAALFAGEQLGILTLAGV 120 Query: 121 ALVSIGIISLANIKDRHNLS--------GPIAAFTTGAFIAAYTVTDGIGARAAGNALAY 172 L+S GIISLA IK R S P++AFTTG FIA YT+ DG+G+R AG+A +Y Sbjct: 121 VLISAGIISLAQIKFRRGSSVAGSRQWDAPLSAFTTGVFIAGYTIVDGLGSRLAGSAASY 180 Query: 173 SGWLFVLDSFPLALIFMWMHRRLPMAAERKQNWLSLAGGVMSLLAYGIVIWAVTLAPMGT 232 +GW+F+LD PL +I++ MH L +A + W +L GG MSLLAYGIVIWA+TLAPMG Sbjct: 181 AGWMFLLDGLPLLMIYLSMHGSLRIALRERATWNALGGGAMSLLAYGIVIWAITLAPMGP 240 Query: 233 VSALRETSVLFAALIGTLFLGEKLTMRRILACILITLGAIVLGW 276 VSALRETSVLFAALI +FLGE LT+RR+L+C +I LGA++LGW Sbjct: 241 VSALRETSVLFAALIARMFLGEALTLRRLLSCAVIALGAVMLGW 284 >ref|YP_002981902.1| hypothetical protein Rpic12D_1949 [Ralstonia pickettii 12D] gb|ACS63230.1| protein of unknown function DUF6 transmembrane [Ralstonia pickettii 12D] Length = 277 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 165/275 (60%), Positives = 201/275 (73%), Gaps = 1/275 (0%) Query: 1 MSLAVVALVLCAALLHASWNALLKSSGDRLASLTIMTIGAGVGAIPLVLFTPLPHAAAWP 60 M+ AV+ALVLCAALLHASWNALLKS DRL ++T+MT+ +GV A+P+ + PLP AAWP Sbjct: 1 MTPAVIALVLCAALLHASWNALLKSGADRLRAITLMTLASGVAALPMAIALPLPAPAAWP 60 Query: 61 CIILSAILHTGYNLFLIRAYRIGDFSQSYPIARGSSPMLVSIGAAIFVGEQMSIYTWLGV 120 + LSA+LH GYN+FL RAYR G+F Q YPIARGSSP+LV++GAA+F GE + GV Sbjct: 61 YVALSAVLHVGYNVFLARAYRFGEFGQVYPIARGSSPLLVTVGAALFAGEMPGVIALTGV 120 Query: 121 ALVSIGIISLANIKDRHNLSGPIAAFTTGAFIAAYTVTDGIGARAAGNALAYSGWLFVLD 180 LVS GI+SLA + + +L +AA TTG FIA YTV DGIGAR AGNA AYS WLF+LD Sbjct: 121 VLVSGGILSLARGR-KADLGSTLAALTTGVFIACYTVCDGIGARVAGNANAYSAWLFMLD 179 Query: 181 SFPLALIFMWMHRRLPMAAERKQNWLSLAGGVMSLLAYGIVIWAVTLAPMGTVSALRETS 240 P+ L++ L + + GGV+SL+AYGIVIWAVTLAPMG VSALRETS Sbjct: 180 GLPMVLLYRVWKGPLNIGLRDVNTLKTFGGGVVSLVAYGIVIWAVTLAPMGPVSALRETS 239 Query: 241 VLFAALIGTLFLGEKLTMRRILACILITLGAIVLG 275 V+FAAL+G LFL E LT RR+ AC +I GA LG Sbjct: 240 VVFAALLGRLFLKESLTARRVSACSVIAFGAYCLG 274 >ref|YP_001899838.1| hypothetical protein Rpic_2272 [Ralstonia pickettii 12J] ref|ZP_07676528.1| integral membrane protein DUF6 [Ralstonia sp. 5_7_47FAA] gb|ACD27406.1| protein of unknown function DUF6 transmembrane [Ralstonia pickettii 12J] gb|EFP65100.1| integral membrane protein DUF6 [Ralstonia sp. 5_7_47FAA] Length = 277 Score = 294 bits (752), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 166/275 (60%), Positives = 203/275 (73%), Gaps = 1/275 (0%) Query: 1 MSLAVVALVLCAALLHASWNALLKSSGDRLASLTIMTIGAGVGAIPLVLFTPLPHAAAWP 60 M+ AV+ALVLCAALLHASWNALLKS DRL ++T+MT+ +GV A+P+ + PLP AAWP Sbjct: 1 MTPAVIALVLCAALLHASWNALLKSGSDRLRAITLMTLASGVAALPMAIALPLPAPAAWP 60 Query: 61 CIILSAILHTGYNLFLIRAYRIGDFSQSYPIARGSSPMLVSIGAAIFVGEQMSIYTWLGV 120 + LSA+LH GYN+FL RAYR G+F Q YPIARGSSP+LV++GA++F GE + T GV Sbjct: 61 YVALSAVLHVGYNVFLARAYRFGEFGQVYPIARGSSPLLVTVGASLFAGEMPGVITLAGV 120 Query: 121 ALVSIGIISLANIKDRHNLSGPIAAFTTGAFIAAYTVTDGIGARAAGNALAYSGWLFVLD 180 LVS GI+SLA + + +L +AA TTG FIA YTV DGIGARAAGNA AYS WLF+LD Sbjct: 121 VLVSGGILSLARGR-KADLGSTLAALTTGVFIACYTVCDGIGARAAGNANAYSAWLFMLD 179 Query: 181 SFPLALIFMWMHRRLPMAAERKQNWLSLAGGVMSLLAYGIVIWAVTLAPMGTVSALRETS 240 P+ L++ L + + GGV+SL+AYGIVIWAVTLAPMG VSALRETS Sbjct: 180 GLPMVLLYRVWKGPLNIDLRDANTLKTFGGGVVSLIAYGIVIWAVTLAPMGPVSALRETS 239 Query: 241 VLFAALIGTLFLGEKLTMRRILACILITLGAIVLG 275 V+FAAL+G LFL E LT RR+ AC +I GA LG Sbjct: 240 VVFAALLGRLFLKESLTARRLSACSVIAFGAYCLG 274