BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0361.p (444 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773510.1| RNA methyltransferase [Herbaspirillum serope... 571 e-160 ref|ZP_08275426.1| Ribosomal RNA small subunit methyltransferase... 555 e-156 ref|YP_001351848.1| tRNA and rRNA cytosine-C5-methylases [Janthi... 542 e-152 ref|YP_001098497.1| putative S-adenosyl-L-methionine-dependent R... 531 e-149 emb|CAL60368.2| putative 16S rRNA methyltransferase B [Herminiim... 531 e-148 >ref|YP_003773510.1| RNA methyltransferase [Herbaspirillum seropedicae SmR1] gb|ADJ61602.1| RNA methyltransferase (SUN protein) protein [Herbaspirillum seropedicae SmR1] Length = 424 Score = 571 bits (1471), Expect = e-160, Method: Compositional matrix adjust. Identities = 305/416 (73%), Positives = 342/416 (82%), Gaps = 10/416 (2%) Query: 28 GTALPQALARQFARSDMTPQARGAIQDLSYLSMRRLGMADGVLALLADKPPQPEILHGLL 87 G ALPQALA+ F+RSD ARGAIQDLSY +MR LG+ + +L LLA+KPPQPE+LHGLL Sbjct: 18 GHALPQALAQIFSRSDAPAPARGAIQDLSYRAMRSLGLTESLLGLLANKPPQPEVLHGLL 77 Query: 88 ACALSLLLDEENPAYDAFTVVNQAVEAAAADAEMSHAKGVVNAILRRFLRERATLLPQVE 147 AL+LL++EE YD+FTVV+QAV+AAA EMS AKGVVNAILRR LRERATL+PQ Sbjct: 78 VTALALLVNEEESGYDSFTVVDQAVQAAAISPEMSFAKGVVNAILRRLLRERATLMPQAT 137 Query: 148 KTPPGAWNYPTWWIDRLKGAYPAQWQDILRSGNAAPPLTLRVNRRKSNVPDYLHLLALNG 207 KTPPG WNYPTWWIDRLK AYP QWQ IL +GN APPLTLRVNRR++ V YL L G Sbjct: 138 KTPPGTWNYPTWWIDRLKAAYPEQWQAILHAGNQAPPLTLRVNRRRTTVAQYLDTLQQAG 197 Query: 208 IGARQVGADAVRLDKPLPVSQIPGFADGLASVQDAAAQMAAPLLDVQDGMRVLDACAAPG 267 + ARQVG AVRL +P+PV Q+PGFA+G+ SVQDAAAQ+AAPLLDV DGMRVLDACAAPG Sbjct: 198 MAARQVGPAAVRLHRPVPVQQLPGFAEGVVSVQDAAAQLAAPLLDVADGMRVLDACAAPG 257 Query: 268 GKTGHLLECAELDLVALDHDPKRLRRIEENLQRLQLKAQLLAGDARDSQDWWDGKQFDRI 327 GKTGHLLE A+LDL ALDHD +RL+RI ENL RLQLKA+L GDAR + DWWDG+ FDRI Sbjct: 258 GKTGHLLELADLDLQALDHDTRRLQRIAENLDRLQLKARLTTGDAR-ADDWWDGQPFDRI 316 Query: 328 LADVPCTASGIVRRHPDIRWLRRKSDTAQLTTLSAQILDNLWQMLKPGGKLLLVTCSLWP 387 LADVPCTASGIVRRHPDIRWLRRK+DTAQL TLS QILD LWQML+P GKLLLVTCSLWP Sbjct: 317 LADVPCTASGIVRRHPDIRWLRRKTDTAQLATLSTQILDKLWQMLRPDGKLLLVTCSLWP 376 Query: 388 QESEEQAAAFAHRHQGSEGNSDHRAVRLPAPGQMLPTASAETDHDGLFYALFQKTG 443 QESE+QA AFA +H A+RLPAPGQ+LPTAS DHDGLFYALFQK G Sbjct: 377 QESEQQAVAFAQKHN---------AIRLPAPGQLLPTASETADHDGLFYALFQKPG 423 >ref|ZP_08275426.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae bacterium IMCC9480] gb|EGF31091.1| Ribosomal RNA small subunit methyltransferase B [Oxalobacteraceae bacterium IMCC9480] Length = 437 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 300/441 (68%), Positives = 351/441 (79%), Gaps = 13/441 (2%) Query: 4 LSLKSDSLAHGLHGAARAIVDVRAGTALPQALARQFARSDMTPQARGAIQDLSYLSMRRL 63 L LK DSLA L AA A+ VR GTALPQAL R +D + QARGAIQD++Y +MR L Sbjct: 4 LDLKPDSLAFSLRSAAHAVALVRGGTALPQALTRVQGYADTSGQARGAIQDIAYRAMRGL 63 Query: 64 GMADGVLALLADKPPQPEILHGLLACALSLLLDEEN--PA-YDAFTVVNQAVEAAAADAE 120 G AD ++ LL + P+P LHGLL CAL+L+ +E+ PA Y+ FTVVNQAVEAA+AD Sbjct: 64 GRADALVTLLTSRAPEPAALHGLLCCALTLIDRDESDLPAPYEIFTVVNQAVEAASADPA 123 Query: 121 MSHAKGVVNAILRRFLRERATLLPQVEKTPPGAWNYPTWWIDRLKGAYPAQWQDILRSGN 180 M+HAKG+VNA+LRRFLRERATLL +V + P WNYP WWID ++ AYP QWQ IL +GN Sbjct: 124 MAHAKGMVNAVLRRFLRERATLLAEVLRQPVAEWNYPGWWIDTMRNAYPQQWQAILHAGN 183 Query: 181 AAPPLTLRVNRRKSNVPDYLHLLALNGIGARQVGADAVRLDKPLPVSQIPGFADGLASVQ 240 AAPPL LRVN+R++ YL LLA I ARQVG DA+RL++P+PV QIPGF +GL SVQ Sbjct: 184 AAPPLILRVNQRRTTPDAYLALLADQQILARQVGPDAIRLERPVPVLQIPGFMEGLVSVQ 243 Query: 241 DAAAQMAAPLLDVQDGMRVLDACAAPGGKTGHLLECAELDLVALDHDPKRLRRIEENLQR 300 DAAAQ+AAPLLD +DGMRVLDACAAPGGKTGHLLE A+LDL+ALD DP+RL+RIEENLQR Sbjct: 244 DAAAQLAAPLLDARDGMRVLDACAAPGGKTGHLLERAQLDLIALDSDPRRLKRIEENLQR 303 Query: 301 LQLKAQLLAGDARDSQDWWDGKQFDRILADVPCTASGIVRRHPDIRWLRRKSDTAQLTTL 360 LQL A+L+AGDA + DWWDGK FDRILADVPCTASGI+RRHPDIRWLRRK+DTAQL L Sbjct: 304 LQLTARLVAGDA-AATDWWDGKPFDRILADVPCTASGILRRHPDIRWLRRKADTAQLAAL 362 Query: 361 SAQILDNLWQMLKPGGKLLLVTCSLWPQESEEQAAAFAHRHQGSEGNSDHRAVRLPAPGQ 420 S++ILDNLW+ML P GKLL VTCSLWPQESE QAAAFA R+Q A RLPAPGQ Sbjct: 363 SSRILDNLWRMLAPDGKLLFVTCSLWPQESEAQAAAFAMRNQ---------AERLPAPGQ 413 Query: 421 MLPTASAETDHDGLFYALFQK 441 +LP A++ DHDGLFYALF+K Sbjct: 414 LLPMATSNEDHDGLFYALFRK 434 >ref|YP_001351848.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp. Marseille] gb|ABR89606.1| tRNA and rRNA cytosine-C5-methylases [Janthinobacterium sp. Marseille] Length = 437 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 292/443 (65%), Positives = 344/443 (77%), Gaps = 14/443 (3%) Query: 4 LSLKSDSLAHGLHGAARAIVDVRAGTALPQALARQFARSDMTPQARGAIQDLSYLSMRRL 63 ++LK DSL+ LHGAA+A+ V G ALPQALA+ FA++ TPQARGAIQDLSY MR + Sbjct: 3 INLKPDSLSFSLHGAAQAVAAVGRGVALPQALAQIFAQTHATPQARGAIQDLSYHCMRHI 62 Query: 64 GMADGVLALLADKPPQPEILHGLLACALSLLLD----EENPAYDAFTVVNQAVEAAAADA 119 G A+ +L + K +P ILHGLL CAL+L+ D E Y AFTVV+QAV AAAAD Sbjct: 63 GRAEALLNAMTTKQTEPAILHGLLCCALALISDPDEAESEARYSAFTVVDQAVTAAAADP 122 Query: 120 EMSHAKGVVNAILRRFLRERATLLPQVEKTPPGAWNYPTWWIDRLKGAYPAQWQDILRSG 179 +M+HAKG+VNA+LRRFLRER LL T WNYP WWIDR++ AYP WQ IL +G Sbjct: 123 DMAHAKGMVNAVLRRFLRERDALLKSAGGTQFARWNYPDWWIDRMRSAYPQNWQAILEAG 182 Query: 180 NAAPPLTLRVNRRKSNVPDYLHLLALNGIGARQVGADAVRLDKPLPVSQIPGFADGLASV 239 NAAPPLTLRVNRRK+ V YL LLA + A ++G DAV+L +P PV QIPGF +GL SV Sbjct: 183 NAAPPLTLRVNRRKTTVDAYLALLAEQSVAATRIGPDAVKLAQPTPVGQIPGFNEGLVSV 242 Query: 240 QDAAAQMAAPLLDVQDGMRVLDACAAPGGKTGHLLECAELDLVALDHDPKRLRRIEENLQ 299 QDAAAQ+AA LLD++DGMRVLDACAAPGGK+GH+LE A+++L+ALD++ +R+ RI ENL+ Sbjct: 243 QDAAAQLAASLLDLRDGMRVLDACAAPGGKSGHILESADVELIALDNEARRMPRIAENLE 302 Query: 300 RLQLKAQLLAGDARDSQDWWDGKQFDRILADVPCTASGIVRRHPDIRWLRRKSDTAQLTT 359 RLQL+A LL GDA + DWWDGK FDRILADVPCTASGIVRRHPDIRWLRRK DT QL Sbjct: 303 RLQLQATLLTGDA-SATDWWDGKPFDRILADVPCTASGIVRRHPDIRWLRRKGDTTQLAA 361 Query: 360 LSAQILDNLWQMLKPGGKLLLVTCSLWPQESEEQAAAFAHRHQGSEGNSDHRAVRLPAPG 419 +SA ILDNLWQML+P GKLL VTCSLWPQESE QAAAFA R+ A RLPAPG Sbjct: 362 ISATILDNLWQMLQPDGKLLFVTCSLWPQESEAQAAAFAVRNN---------ATRLPAPG 412 Query: 420 QMLPTASAETDHDGLFYALFQKT 442 Q+LPTA+AE+DHDGLFYALFQKT Sbjct: 413 QLLPTANAESDHDGLFYALFQKT 435 >ref|YP_001098497.1| putative S-adenosyl-L-methionine-dependent RNA methyltransferase [Herminiimonas arsenicoxydans] Length = 449 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 300/447 (67%), Positives = 346/447 (77%), Gaps = 14/447 (3%) Query: 1 VTHLSLKSDSLAHGLHGAARAIVDVRAGTALPQALARQFARSDMTPQARGAIQDLSYLSM 60 VT + LK DSL+ LHGAA+A+ DV G ALPQ+LAR FA+++ TPQARGAIQD+SY M Sbjct: 12 VTTIHLKPDSLSFTLHGAAQAVADVGRGIALPQSLARIFAQTNATPQARGAIQDISYHCM 71 Query: 61 RRLGMADGVLALLADKPPQPEILHGLLACALSLLLDEENPA----YDAFTVVNQAVEAAA 116 R +G A+ +L + K +P ILHGLL CAL+L+ D E Y AFTVV+QAV AAA Sbjct: 72 RHIGRAEALLNAMTTKQTEPPILHGLLCCALALISDPEEAVSGARYSAFTVVDQAVTAAA 131 Query: 117 ADAEMSHAKGVVNAILRRFLRERATLLPQVEKTPPGAWNYPTWWIDRLKGAYPAQWQDIL 176 AD +M+HAKG+VNAILRRFLRER L+ T WNYP WWIDR++ AYP WQ IL Sbjct: 132 ADTDMAHAKGMVNAILRRFLRERDALMKSAAGTQLARWNYPDWWIDRMRSAYPRDWQAIL 191 Query: 177 RSGNAAPPLTLRVNRRKSNVPDYLHLLALNGIGARQVGADAVRLDKPLPVSQIPGFADGL 236 +GNAAPPLTLRVN+RK +V DYL LLA GI A +G AVRL +P PV+QIPGF+DGL Sbjct: 192 EAGNAAPPLTLRVNQRKISVSDYLALLAQQGIAATLIGPVAVRLAQPTPVNQIPGFSDGL 251 Query: 237 ASVQDAAAQMAAPLLDVQDGMRVLDACAAPGGKTGHLLECAELDLVALDHDPKRLRRIEE 296 SVQDAAAQ+AAPLLD++DGMRVLDACAAPGGK+GH+LE A ++L ALD D +RL RI E Sbjct: 252 VSVQDAAAQLAAPLLDLRDGMRVLDACAAPGGKSGHILETAVVELTALDSDERRLPRITE 311 Query: 297 NLQRLQLKAQLLAGDARDSQDWWDGKQFDRILADVPCTASGIVRRHPDIRWLRRKSDTAQ 356 NLQRLQL A LL GDA WWDGK F+RILADVPCTASGIVRRHPDIRWLRRKSD Q Sbjct: 312 NLQRLQLNASLLVGDA-TGNSWWDGKPFERILADVPCTASGIVRRHPDIRWLRRKSDAVQ 370 Query: 357 LTTLSAQILDNLWQMLKPGGKLLLVTCSLWPQESEEQAAAFAHRHQGSEGNSDHRAVRLP 416 L +SAQILDNLWQML+ GKLL VTCSLWPQESE QAAAFA R +RA+RLP Sbjct: 371 LAAISAQILDNLWQMLQADGKLLFVTCSLWPQESEAQAAAFAVR---------NRAIRLP 421 Query: 417 APGQMLPTASAETDHDGLFYALFQKTG 443 APGQ+LPTA+AE DHDGLFYALFQK+G Sbjct: 422 APGQLLPTANAEDDHDGLFYALFQKSG 448 >emb|CAL60368.2| putative 16S rRNA methyltransferase B [Herminiimonas arsenicoxydans] Length = 453 Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust. Identities = 300/447 (67%), Positives = 346/447 (77%), Gaps = 14/447 (3%) Query: 1 VTHLSLKSDSLAHGLHGAARAIVDVRAGTALPQALARQFARSDMTPQARGAIQDLSYLSM 60 VT + LK DSL+ LHGAA+A+ DV G ALPQ+LAR FA+++ TPQARGAIQD+SY M Sbjct: 16 VTTIHLKPDSLSFTLHGAAQAVADVGRGIALPQSLARIFAQTNATPQARGAIQDISYHCM 75 Query: 61 RRLGMADGVLALLADKPPQPEILHGLLACALSLLLDEENPA----YDAFTVVNQAVEAAA 116 R +G A+ +L + K +P ILHGLL CAL+L+ D E Y AFTVV+QAV AAA Sbjct: 76 RHIGRAEALLNAMTTKQTEPPILHGLLCCALALISDPEEAVSGARYSAFTVVDQAVTAAA 135 Query: 117 ADAEMSHAKGVVNAILRRFLRERATLLPQVEKTPPGAWNYPTWWIDRLKGAYPAQWQDIL 176 AD +M+HAKG+VNAILRRFLRER L+ T WNYP WWIDR++ AYP WQ IL Sbjct: 136 ADTDMAHAKGMVNAILRRFLRERDALMKSAAGTQLARWNYPDWWIDRMRSAYPRDWQAIL 195 Query: 177 RSGNAAPPLTLRVNRRKSNVPDYLHLLALNGIGARQVGADAVRLDKPLPVSQIPGFADGL 236 +GNAAPPLTLRVN+RK +V DYL LLA GI A +G AVRL +P PV+QIPGF+DGL Sbjct: 196 EAGNAAPPLTLRVNQRKISVSDYLALLAQQGIAATLIGPVAVRLAQPTPVNQIPGFSDGL 255 Query: 237 ASVQDAAAQMAAPLLDVQDGMRVLDACAAPGGKTGHLLECAELDLVALDHDPKRLRRIEE 296 SVQDAAAQ+AAPLLD++DGMRVLDACAAPGGK+GH+LE A ++L ALD D +RL RI E Sbjct: 256 VSVQDAAAQLAAPLLDLRDGMRVLDACAAPGGKSGHILETAVVELTALDSDERRLPRITE 315 Query: 297 NLQRLQLKAQLLAGDARDSQDWWDGKQFDRILADVPCTASGIVRRHPDIRWLRRKSDTAQ 356 NLQRLQL A LL GDA WWDGK F+RILADVPCTASGIVRRHPDIRWLRRKSD Q Sbjct: 316 NLQRLQLNASLLVGDA-TGNSWWDGKPFERILADVPCTASGIVRRHPDIRWLRRKSDAVQ 374 Query: 357 LTTLSAQILDNLWQMLKPGGKLLLVTCSLWPQESEEQAAAFAHRHQGSEGNSDHRAVRLP 416 L +SAQILDNLWQML+ GKLL VTCSLWPQESE QAAAFA R +RA+RLP Sbjct: 375 LAAISAQILDNLWQMLQADGKLLFVTCSLWPQESEAQAAAFAVR---------NRAIRLP 425 Query: 417 APGQMLPTASAETDHDGLFYALFQKTG 443 APGQ+LPTA+AE DHDGLFYALFQK+G Sbjct: 426 APGQLLPTANAEDDHDGLFYALFQKSG 452