BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0357.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751237.1| hypothetical protein CFU_0578 [Collimonas fu... 417 e-114 gb|EFV87313.1| membrane protein [Achromobacter xylosoxidans C54] 322 5e-86 gb|EGP43273.1| inner membrane protein 1 [Achromobacter xylosoxid... 318 5e-85 ref|YP_001789550.1| hypothetical protein Lcho_0510 [Leptothrix c... 315 7e-84 ref|YP_003166257.1| hypothetical protein CAP2UW1_0992 [Candidatu... 309 3e-82 >ref|YP_004751237.1| hypothetical protein CFU_0578 [Collimonas fungivorans Ter331] gb|AEK60414.1| hypothetical protein CFU_0578 [Collimonas fungivorans Ter331] Length = 319 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 217/317 (68%), Positives = 252/317 (79%), Gaps = 1/317 (0%) Query: 1 MFIGILCALCAGLMWGLVFVTPLLLGDYPGVVLSLGRYVAFGLIALAPAWFDRRRIGLLS 60 M G+LCAL AGLMWGLVF+ PL+L DYPG++LS GRYVAFGLIALAPA DR+RI L+ Sbjct: 1 MLTGLLCALGAGLMWGLVFIAPLMLPDYPGLMLSFGRYVAFGLIALAPALLDRKRIAALT 60 Query: 61 RQDWTVAFKLALVGNLIYYAMLATAIQLADAPLPTMLIGTLPIVISVCANWRPGHVSESV 120 R DW A KL+LVGNL+YYA LATAIQLADAPLPTMLIGTLP+VISV +NW PGH ESV Sbjct: 61 RADWRAALKLSLVGNLLYYAALATAIQLADAPLPTMLIGTLPVVISVFSNWSPGHAVESV 120 Query: 121 AWSRLAPSLMILGLGLTLVNSSELERLR-DTIGNARSTTDYALGCLIAVCAIAAWTWYPI 179 AW RLAPSL+I+ LG+ VN++EL +R N RS DY LGCLIAV A+ AWTWYPI Sbjct: 121 AWRRLAPSLLIILLGILCVNAAELTHMRLAGSSNTRSIGDYVLGCLIAVAAVGAWTWYPI 180 Query: 180 VNSRYLRTHTHINSVTWATAQGLATLPMALIGFALFGIYGVASGSDYAFPLGPRPGTFVV 239 VN+RYLR + HI+ TWATAQGLA LP+ALIG +G Y +G Y+FP GPRP FV Sbjct: 181 VNARYLRANPHISPSTWATAQGLAVLPLALIGLLGYGAYLKLTGGSYSFPFGPRPLQFVG 240 Query: 240 MMLVIGLSASWLGTLLWNKASQLLPTALVAQLIVFETLAALLYAFLLRGVAPDLRVLAGA 299 +MLVIGL ASW+GTLLWNKASQ LPTAL+AQLIVFETLAALLYAF+ R P ++V+AG Sbjct: 241 LMLVIGLCASWIGTLLWNKASQHLPTALLAQLIVFETLAALLYAFIFRDAVPGVQVMAGI 300 Query: 300 VLLCIGVVYGVRTFSRR 316 LLCIG+V+GVRTF + Sbjct: 301 ALLCIGIVFGVRTFQHQ 317 >gb|EFV87313.1| membrane protein [Achromobacter xylosoxidans C54] Length = 317 Score = 322 bits (825), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 173/311 (55%), Positives = 217/311 (69%), Gaps = 2/311 (0%) Query: 1 MFIGILCALCAGLMWGLVFVTPLLLGDYPGVVLSLGRYVAFGLIALAPAWFDRRRIGLLS 60 M+ G L AL AGLMWGLVFV PLLL +YP + S+ RY+AFGLIA+ AW DR+ + LS Sbjct: 1 MWAGTLYALAAGLMWGLVFVGPLLLPEYPAALQSVARYLAFGLIAIPLAWLDRKALRQLS 60 Query: 61 RQDWTVAFKLALVGNLIYYAMLATAIQLADAPLPTMLIGTLPIVISVCANWRPGHVSESV 120 R DW A KLA +GNL+YY LA+AIQ A P+PTM+IGTLP+VI++CAN R + Sbjct: 61 RADWLEALKLAAIGNLLYYLCLASAIQRAGGPVPTMIIGTLPVVIAICANLRNARRDGRL 120 Query: 121 AWSRLAPSLMILGLGLTLVNSSELERLRDTIGNARSTTDYALGCLIAVCAIAAWTWYPIV 180 W RLAPSL ++ LG+ VN +EL+ LR + YA+G ++A+ A+A WTWYP+ Sbjct: 121 PWKRLAPSLALIALGIACVNQAELQALRQQADA--DLSRYAIGAVLALGAVACWTWYPLR 178 Query: 181 NSRYLRTHTHINSVTWATAQGLATLPMALIGFALFGIYGVASGSDYAFPLGPRPGTFVVM 240 N+ +LR H + TWATAQG+ATLP+AL G+ L A+GS + PLGPRP F+ + Sbjct: 179 NADWLRDHPGRSPRTWATAQGVATLPLALAGYGLLWGGMAATGSGFDMPLGPRPEVFLGL 238 Query: 241 MLVIGLSASWLGTLLWNKASQLLPTALVAQLIVFETLAALLYAFLLRGVAPDLRVLAGAV 300 M++IGL ASWLGTL WN+ASQ LPTAL QLIVFETLAAL YAF+LRG P LAG Sbjct: 239 MIIIGLFASWLGTLCWNEASQRLPTALAGQLIVFETLAALAYAFILRGSLPQPLTLAGIA 298 Query: 301 LLCIGVVYGVR 311 LL IGV+ VR Sbjct: 299 LLMIGVLRAVR 309 >gb|EGP43273.1| inner membrane protein 1 [Achromobacter xylosoxidans AXX-A] Length = 317 Score = 318 bits (816), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 174/311 (55%), Positives = 219/311 (70%), Gaps = 2/311 (0%) Query: 1 MFIGILCALCAGLMWGLVFVTPLLLGDYPGVVLSLGRYVAFGLIALAPAWFDRRRIGLLS 60 M+ G AL AGLMWGLVFV PLLL +YP + S+ RY+AFGLIA+ AW DR+ + LS Sbjct: 1 MWAGTSYALAAGLMWGLVFVGPLLLPEYPAALQSVARYLAFGLIAMPLAWLDRKALRQLS 60 Query: 61 RQDWTVAFKLALVGNLIYYAMLATAIQLADAPLPTMLIGTLPIVISVCANWRPGHVSESV 120 R DW A KLA +GNL+YY LA+AIQ A P+PTM+IGTLP+VI++CAN R + Sbjct: 61 RADWIEALKLAAIGNLLYYLCLASAIQRAGGPVPTMIIGTLPVVIAICANLRNARRDGRL 120 Query: 121 AWSRLAPSLMILGLGLTLVNSSELERLRDTIGNARSTTDYALGCLIAVCAIAAWTWYPIV 180 W RLAPSL+++ LG+ VN EL+ LR + YA+G ++A+ A+A WTWYP+ Sbjct: 121 PWKRLAPSLVLIALGIGCVNQVELQALRQEADA--DLSRYAIGAVLALAAVACWTWYPLR 178 Query: 181 NSRYLRTHTHINSVTWATAQGLATLPMALIGFALFGIYGVASGSDYAFPLGPRPGTFVVM 240 N+ +LR H + TWATAQG+ATLP+AL G+ L A+GSD+A PLGPRP F+ + Sbjct: 179 NADWLRNHPGRSPRTWATAQGVATLPLALAGYGLLWAGMAATGSDFAMPLGPRPDVFLGL 238 Query: 241 MLVIGLSASWLGTLLWNKASQLLPTALVAQLIVFETLAALLYAFLLRGVAPDLRVLAGAV 300 M++IGL +SWLGTL WN+ASQ LPTALV QLIVFETLAAL YAF+LRG P LAG Sbjct: 239 MIIIGLFSSWLGTLCWNEASQRLPTALVGQLIVFETLAALAYAFILRGSMPQPLTLAGIA 298 Query: 301 LLCIGVVYGVR 311 LL IGV+ VR Sbjct: 299 LLMIGVLSAVR 309 >ref|YP_001789550.1| hypothetical protein Lcho_0510 [Leptothrix cholodnii SP-6] gb|ACB32785.1| conserved hypothetical protein [Leptothrix cholodnii SP-6] Length = 322 Score = 315 bits (807), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 171/314 (54%), Positives = 215/314 (68%), Gaps = 8/314 (2%) Query: 1 MFIGILCALCAGLMWGLVFVTPLLLGDYPGVVLSLGRYVAFGLIALAPAWFDRRRIGLLS 60 M G L AL AGLMWGLVFV PLLL +Y + S GRY+AFGLIAL AWFDR R+ + Sbjct: 1 MLTGTLFALTAGLMWGLVFVGPLLLPEYSPALQSFGRYLAFGLIALPLAWFDRARLAQFT 60 Query: 61 RQDWTVAFKLALVGNLIYYAMLATAIQLADAPLPTMLIGTLPIVISVCANWRPGHVSESV 120 R DW A +L++VGN++YY LA AIQ A PLPTM+IGTLP+VI++ +N R + Sbjct: 61 RADWREALRLSIVGNIVYYLCLAAAIQRAGGPLPTMIIGTLPVVIAISSNLRDAARDGRL 120 Query: 121 AWSRLAPSLMILGLGLTLVNSSELERLRDTIGNARSTTD---YALGCLIAVCAIAAWTWY 177 W +LAPSL+++ G++LVN E+E +R A+ D YA G L+A+CA+ WTWY Sbjct: 121 PWLQLAPSLLLIAAGISLVNQVEIEAMR-----AQPDADLGRYASGALLAICAVVCWTWY 175 Query: 178 PIVNSRYLRTHTHINSVTWATAQGLATLPMALIGFALFGIYGVASGSDYAFPLGPRPGTF 237 P+ N+ +LR H + TWATAQGLATLP+AL+G+A + ASGS + P GPRP F Sbjct: 176 PLRNADWLRAHPDRSPRTWATAQGLATLPLALLGYAASWAWLSASGSAFPMPFGPRPVFF 235 Query: 238 VVMMLVIGLSASWLGTLLWNKASQLLPTALVAQLIVFETLAALLYAFLLRGVAPDLRVLA 297 + +M IGL ASWLGTL WN+ASQ LPT LV QLIVFETLAAL YAF+LRG P L Sbjct: 236 LGLMFAIGLLASWLGTLCWNEASQRLPTTLVGQLIVFETLAALSYAFMLRGQWPAPATLG 295 Query: 298 GAVLLCIGVVYGVR 311 G LL +GV++ VR Sbjct: 296 GIALLVVGVLWAVR 309 >ref|YP_003166257.1| hypothetical protein CAP2UW1_0992 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV34328.1| protein of unknown function DUF6 transmembrane [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 337 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 176/310 (56%), Positives = 218/310 (70%), Gaps = 9/310 (2%) Query: 4 GILCALCAGLMWGLVFVTPLLLGDYPGVVLSLGRYVAFGLIALAPAWFDRRRIGLLSRQD 63 G+ CAL AGL+WGLVFV PL+L DYP +LS GRY+ FG+IAL A D + L R D Sbjct: 14 GVACALGAGLLWGLVFVVPLMLPDYPPAMLSFGRYLGFGVIALLLALTDLPGLRRLQRDD 73 Query: 64 WTVAFKLALVGNLIYYAMLATAIQLADAPLPTMLIGTLPIVISVCANWRPGHVSESVAWS 123 W +A +LALVGN++YY L+ AIQLADAPLPTMLIGTLPIVI++ +N+ SE++ W Sbjct: 74 WQMAGELALVGNILYYLFLSAAIQLADAPLPTMLIGTLPIVIAIVSNFG----SEALPWR 129 Query: 124 RLAPSLMILGLGLTLVNSSELERLRDTIGNARSTTDYALGCLIAVCAIAAWTWYPIVNSR 183 RL PSL ++ LG+ LVNS E+ + G RS DY +G L+A+ A+ AWTWYP+ NSR Sbjct: 130 RLLPSLAVIALGIALVNSHEMAQR----GEGRSAHDYVVGALLALAAVVAWTWYPVRNSR 185 Query: 184 YLRTHTHINSVTWATAQGLATLPMALIGFALFGIYGVASGSDYAFPLGPRPGTFVVMMLV 243 +LR + S TWA AQGLATLP+A +G A+ G++ S Y +PLGP PG +V +ML Sbjct: 186 WLRRRPALASGTWALAQGLATLPLAALGMAVAGVH-AGGESAYDYPLGPHPGRYVGLMLT 244 Query: 244 IGLSASWLGTLLWNKASQLLPTALVAQLIVFETLAALLYAFLLRGVAPDLRVLAGAVLLC 303 +GL ASWLGTLLWN+AS+LLPTAL QLIVFETLAA YAF+ RG P L G LL Sbjct: 245 LGLCASWLGTLLWNRASKLLPTALTGQLIVFETLAAFAYAFIWRGALPGGTALVGIALLI 304 Query: 304 IGVVYGVRTF 313 GVV GVR F Sbjct: 305 TGVVLGVRAF 314