BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0354.p (394 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_890205.1| hypothetical protein BB3670 [Bordetella bronchi... 447 e-123 ref|NP_879902.1| hypothetical protein BP1123 [Bordetella pertuss... 446 e-123 emb|CCA80892.1| Oligopeptide transporter [blood disease bacteriu... 442 e-122 gb|AEG67454.1| conserved hypothetical protein [Ralstonia solanac... 439 e-121 ref|YP_585255.1| oligopeptide transporter [Cupriavidus metallidu... 438 e-121 >ref|NP_890205.1| hypothetical protein BB3670 [Bordetella bronchiseptica RB50] emb|CAE35643.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 693 Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust. Identities = 248/397 (62%), Positives = 296/397 (74%), Gaps = 5/397 (1%) Query: 1 VAAVWTLITLFRPMVAGVRESLRS--RSTFDDGSERPLTDRDLPVRAIALIGVAVMALLT 58 V A+WTL TLF PMV GVR S + RS P T+RDLP R I+LI +A++A+L Sbjct: 291 VGAIWTLATLFMPMVRGVRTSFAAFGRSGEAAYGSAPRTERDLPSRWISLITLALVAVLV 350 Query: 59 LIFSVFLIDARLSLPLLCGLVAMSLAFSCVFGFLVAAACGYMAGLVGSSSSPISGIGIIA 118 +F+ FL A LS GLVA ++ F+ VFGFLVAAACGYMAGL+GSS+SPISG+GI+A Sbjct: 351 GVFAAFLQPAMLSPGARWGLVAYAVVFAFVFGFLVAAACGYMAGLIGSSTSPISGVGIVA 410 Query: 119 MILVSLLLLASGSVDHLLDAPGSSKLPIALAIFVTAAIIAIAAIANDNLQDLKTGWLVGA 178 ++LVSLL+LA D LL P ++ IALAIF T+A++A+A+I+NDNLQDLKTGWLVGA Sbjct: 411 IVLVSLLMLAIQRGDGLLATPQGLQMGIALAIFTTSAVVAVASISNDNLQDLKTGWLVGA 470 Query: 179 TPYRQQIALLIGCVVGAAVISPILELLYNAYGFVGALPRPGMDASHALAAPQATLMTAIA 238 TP+RQQ+ALLIGCVVGAAVISP+LELLYNAYGF ALPRPGMD S ALAAPQATLM AIA Sbjct: 471 TPWRQQVALLIGCVVGAAVISPVLELLYNAYGFGDALPRPGMDPSQALAAPQATLMLAIA 530 Query: 239 NGIFTHQLNWTMILIGVAIGALLIVIDIVLEKRGSKARVPALAVGLGIYLPPSVGMALVA 298 GIFTHQLNWTMILIG+ +G LIVID VL + AR+P LAVG+GIYLPPS +V Sbjct: 531 QGIFTHQLNWTMILIGMGVGVALIVIDQVLRRTCRVARLPVLAVGIGIYLPPSASAPIVV 590 Query: 299 GALIAW---GLQLHLAKRKASGDKAGAGRIERRGVLVTSGLIVGESLMGVILAAVIGATG 355 GA++AW G A + A RRGVLV SGLIVGESL+GV+LAAVIGATG Sbjct: 591 GAVLAWLLEGALRRRAAAAGQDYERYAEGPNRRGVLVASGLIVGESLVGVLLAAVIGATG 650 Query: 356 RDDPLALVGAGFAPAAQWLGLAVFALVIAWFVRRLLK 392 + PLA+VGAGF P A+WLG VFA V W RR+++ Sbjct: 651 DEAPLAVVGAGFGPTAEWLGFVVFAAVAVWIYRRVVR 687 >ref|NP_879902.1| hypothetical protein BP1123 [Bordetella pertussis Tohama I] emb|CAE41421.1| putative membrane protein [Bordetella pertussis Tohama I] Length = 682 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 248/397 (62%), Positives = 296/397 (74%), Gaps = 5/397 (1%) Query: 1 VAAVWTLITLFRPMVAGVRESLRS--RSTFDDGSERPLTDRDLPVRAIALIGVAVMALLT 58 V A+WTL TLF PMV GVR S + RS P T+RDLP R I+LI +A++A+L Sbjct: 280 VGAIWTLATLFMPMVRGVRTSFAAFGRSGEAAYGSAPRTERDLPSRWISLITLALVAVLV 339 Query: 59 LIFSVFLIDARLSLPLLCGLVAMSLAFSCVFGFLVAAACGYMAGLVGSSSSPISGIGIIA 118 +F+ FL A LS GLVA ++ F+ VFGFLVAAACGYMAGL+GSS+SPISG+GI+A Sbjct: 340 GVFAAFLQPAVLSPGARWGLVAYAVVFAFVFGFLVAAACGYMAGLIGSSTSPISGVGIVA 399 Query: 119 MILVSLLLLASGSVDHLLDAPGSSKLPIALAIFVTAAIIAIAAIANDNLQDLKTGWLVGA 178 ++LVSLL+LA D LL P ++ IALAIF T+A++A+A+I+NDNLQDLKTGWLVGA Sbjct: 400 IVLVSLLMLAIQRGDGLLATPQGLQMGIALAIFTTSAVVAVASISNDNLQDLKTGWLVGA 459 Query: 179 TPYRQQIALLIGCVVGAAVISPILELLYNAYGFVGALPRPGMDASHALAAPQATLMTAIA 238 TP+RQQ+ALLIGCVVGAAVISP+LELLYNAYGF ALPRPGMD S ALAAPQATLM AIA Sbjct: 460 TPWRQQVALLIGCVVGAAVISPVLELLYNAYGFGDALPRPGMDPSQALAAPQATLMLAIA 519 Query: 239 NGIFTHQLNWTMILIGVAIGALLIVIDIVLEKRGSKARVPALAVGLGIYLPPSVGMALVA 298 GIFTHQLNWTMILIG+ +G LIVID VL + AR+P LAVG+GIYLPPS +V Sbjct: 520 QGIFTHQLNWTMILIGMGVGVALIVIDQVLRRTCRVARLPVLAVGIGIYLPPSASAPIVV 579 Query: 299 GALIAW---GLQLHLAKRKASGDKAGAGRIERRGVLVTSGLIVGESLMGVILAAVIGATG 355 GA++AW G A + A RRGVLV SGLIVGESL+GV+LAAVIGATG Sbjct: 580 GAVLAWLLEGALRRRAAAAGQDYERYAEGPNRRGVLVASGLIVGESLVGVLLAAVIGATG 639 Query: 356 RDDPLALVGAGFAPAAQWLGLAVFALVIAWFVRRLLK 392 + PLA+VGAGF P A+WLG VFA V W RR+++ Sbjct: 640 DEAPLAVVGAGFGPTAEWLGFVVFAAVAVWIYRRVVR 676 >emb|CCA80892.1| Oligopeptide transporter [blood disease bacterium R229] Length = 670 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 251/394 (63%), Positives = 299/394 (75%), Gaps = 5/394 (1%) Query: 1 VAAVWTLITLFRPMVAGVRESLRSRSTFDDGSERPLTDRDLPVRAIALIGVAVMALLTLI 60 VAAVWTL TL P+V GV+ S S + P TD+D+ R I L+ +A++ +L + Sbjct: 273 VAAVWTLATLIGPVVRGVKRSFGSLR--PQSGDVPRTDQDMAPRWILLVTLAMVVVLVIT 330 Query: 61 FSVFLIDARLSLPLLCGLVAMSLAFSCVFGFLVAAACGYMAGLVGSSSSPISGIGIIAMI 120 F+ FL A LS LVA ++ F+ VFGFLVAAACGYMAGLVGSS+SPISG+GIIA+ Sbjct: 331 FAAFLAPATLSPGSRGLLVACAVLFAVVFGFLVAAACGYMAGLVGSSTSPISGVGIIAIT 390 Query: 121 LVSLLLLASGSVDHLLDAPGSSKLPIALAIFVTAAIIAIAAIANDNLQDLKTGWLVGATP 180 LVSLLLLA G+ LL +P +SKL IALAIF T+A+IA+A I+NDNLQDLKTGWLVGATP Sbjct: 391 LVSLLLLAVGADRGLLGSPEASKLGIALAIFTTSAVIAVATISNDNLQDLKTGWLVGATP 450 Query: 181 YRQQIALLIGCVVGAAVISPILELLYNAYGFVGALPRPGMDASHALAAPQATLMTAIANG 240 +RQQ+ALLIGCV GAAVISP+LELLYNAYGF GALPRPGMDAS AL+APQATLMTAIA G Sbjct: 451 WRQQVALLIGCVAGAAVISPVLELLYNAYGFAGALPRPGMDASQALSAPQATLMTAIATG 510 Query: 241 IFTHQLNWTMILIGVAIGALLIVIDIVLEKRGSKARVPALAVGLGIYLPPSVGMALVAGA 300 IFTHQL WTM+ G+ IG LI ID L++RG AR+P LAVG+GIYLPP+V LV GA Sbjct: 511 IFTHQLQWTMVSAGIVIGIALIAIDWALKQRGGVARLPVLAVGIGIYLPPTVSAPLVVGA 570 Query: 301 LIAWGLQLHLAKR-KASG--DKAGAGRIERRGVLVTSGLIVGESLMGVILAAVIGATGRD 357 ++AW + LAKR +A+G K A R GVL+ SGLIVGESL+GV++AAVIGA+G+D Sbjct: 571 VLAWVIDQRLAKRAQAAGVPFKRYAEVPNRHGVLLASGLIVGESLVGVLMAAVIGASGKD 630 Query: 358 DPLALVGAGFAPAAQWLGLAVFALVIAWFVRRLL 391 PLALVG F AQWLGL VFALV F RR+L Sbjct: 631 APLALVGEPFEGTAQWLGLIVFALVCRAFARRVL 664 >gb|AEG67454.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length = 677 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 250/394 (63%), Positives = 300/394 (76%), Gaps = 5/394 (1%) Query: 1 VAAVWTLITLFRPMVAGVRESLRSRSTFDDGSERPLTDRDLPVRAIALIGVAVMALLTLI 60 VAAVWTL TL P+V GVR S S E P TDRD+ R I L+ +A++A+L + Sbjct: 280 VAAVWTLATLIGPVVRGVRRSFGSLR--PPSGEVPRTDRDMAPRWILLVTLAMVAVLAIT 337 Query: 61 FSVFLIDARLSLPLLCGLVAMSLAFSCVFGFLVAAACGYMAGLVGSSSSPISGIGIIAMI 120 F+ FL A LS LVA ++ F+ VFGFLVAAACGYMAGLVGSS+SPISG+GIIA+ Sbjct: 338 FAAFLAPATLSPGSRGLLVACAVLFAVVFGFLVAAACGYMAGLVGSSTSPISGVGIIAIT 397 Query: 121 LVSLLLLASGSVDHLLDAPGSSKLPIALAIFVTAAIIAIAAIANDNLQDLKTGWLVGATP 180 LVSLLLLA G+ LL +P + +L IALAIF T+A++A+A I+NDNLQDLKTGWLVGATP Sbjct: 398 LVSLLLLAVGADRGLLGSPEAGRLGIALAIFTTSAVLAVATISNDNLQDLKTGWLVGATP 457 Query: 181 YRQQIALLIGCVVGAAVISPILELLYNAYGFVGALPRPGMDASHALAAPQATLMTAIANG 240 +RQQ+ALLIGCV GAAVISP+LELLYNAYGF GALPRPGMDA+ AL+APQATLMTAIA G Sbjct: 458 WRQQVALLIGCVAGAAVISPVLELLYNAYGFSGALPRPGMDAAQALSAPQATLMTAIATG 517 Query: 241 IFTHQLNWTMILIGVAIGALLIVIDIVLEKRGSKARVPALAVGLGIYLPPSVGMALVAGA 300 IFTHQL WTM++ G+ IGA LI ID L++RG AR+P LAVG+GIYLPP+V LV GA Sbjct: 518 IFTHQLQWTMVIAGIGIGAALIAIDWALKQRGGVARLPVLAVGIGIYLPPTVSAPLVVGA 577 Query: 301 LIAWGLQLHLAKRKASGD---KAGAGRIERRGVLVTSGLIVGESLMGVILAAVIGATGRD 357 ++AWG+ LA+R + + A R GVL+ SGLIVGESL+GV+LAAVIGA+G++ Sbjct: 578 VLAWGIDRILARRARAAGVPFERYAKVPNRHGVLLASGLIVGESLVGVLLAAVIGASGKE 637 Query: 358 DPLALVGAGFAPAAQWLGLAVFALVIAWFVRRLL 391 PLALVGA F AQWLGL VFALV F RR+L Sbjct: 638 APLALVGASFEGTAQWLGLIVFALVCWAFARRIL 671 >ref|YP_585255.1| oligopeptide transporter [Cupriavidus metallidurans CH34] gb|ABF09986.1| oligopeptide transporter [Cupriavidus metallidurans CH34] Length = 676 Score = 438 bits (1126), Expect = e-121, Method: Compositional matrix adjust. Identities = 248/399 (62%), Positives = 298/399 (74%), Gaps = 7/399 (1%) Query: 1 VAAVWTLITLFRPMVAGVRES---LRSRSTFDDGSERPLTDRDLPVRAIALIGVAVMALL 57 +AA+WTL TLF+PMV GVR S LR+ + +G P T RDLP+ I ++ + ++ +L Sbjct: 278 IAAIWTLGTLFKPMVEGVRASMGALRAGAP-GEGGAVPRTQRDLPMAWIGVLTLVLLVVL 336 Query: 58 TLIFSVFLIDARLSLPLLCGLVAMSLAFSCVFGFLVAAACGYMAGLVGSSSSPISGIGII 117 + F FL A L LV ++ F+ VFGFLVAAACGYMAGLVGSS+SPISGIGII Sbjct: 337 AVTFGYFLAPAPLDTGATWRLVGCAVLFAFVFGFLVAAACGYMAGLVGSSASPISGIGII 396 Query: 118 AMILVSLLLLASGSVDHLLDAPGSSKLPIALAIFVTAAIIAIAAIANDNLQDLKTGWLVG 177 A+ILVSLL+L G++D LLD K IALAIF T+A++A+A+I+NDNLQDLKTGWLVG Sbjct: 397 AVILVSLLILGIGTLDGLLDTSEGGKYAIALAIFTTSAVVAVASISNDNLQDLKTGWLVG 456 Query: 178 ATPYRQQIALLIGCVVGAAVISPILELLYNAYGFVGALPRPGMDASHALAAPQATLMTAI 237 ATP+RQQ+ALLIGC VGAAVI P+LELLY+AYGF GALPR MD + ALAAPQATLMTAI Sbjct: 457 ATPWRQQVALLIGCAVGAAVIPPVLELLYHAYGFAGALPRADMDPNSALAAPQATLMTAI 516 Query: 238 ANGIFTHQLNWTMILIGVAIGALLIVIDIVLEKRGSKARVPALAVGLGIYLPPSVGMALV 297 A GIFTH+LNWTMILIGVA+G +LI ID VL RG AR+P LAVG+GIYLPP++ ALV Sbjct: 517 ATGIFTHKLNWTMILIGVALGVVLIAIDEVLRHRGGVARLPVLAVGIGIYLPPTISSALV 576 Query: 298 AGALIAWGLQLHLAKR-KASGDKAGA--GRIERRGVLVTSGLIVGESLMGVILAAVIGAT 354 GA+++W L KR +A GD ERRG L+ SGLIVGESL+GV LAAVIG + Sbjct: 577 VGAVLSWWLLRTERKRAEARGDDVPTVLAHAERRGTLLASGLIVGESLVGVALAAVIGLS 636 Query: 355 GRDDPLALVGAGFAPAAQWLGLAVFALVIAWFVRRLLKA 393 G++ PLALVG GF AQWLGLAVF LV F RR+L A Sbjct: 637 GKEAPLALVGEGFGTTAQWLGLAVFVLVCVGFCRRVLAA 675