BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0348.p         (112 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773522.1| nitrogen regulatory PII-like protein [Herbas...   215   2e-54
ref|YP_004754806.1| nitrogen regulatory protein P-II [Collimonas...   203   6e-51
ref|YP_001098507.1| nitrogen regulatory protein P-II 2 [Herminii...   202   9e-51
ref|ZP_08275437.1| Nitrogen regulatory protein P-II [Oxalobacter...   202   9e-51
ref|YP_001351859.1| nitrogen regulatory protein PII [Janthinobac...   201   3e-50

>ref|YP_003773522.1| nitrogen regulatory PII-like protein [Herbaspirillum seropedicae
           SmR1]
 gb|AAZ43075.1| GlnK [Herbaspirillum seropedicae SmR1]
 gb|ADJ61614.1| nitrogen regulatory PII-like protein [Herbaspirillum seropedicae
           SmR1]
          Length = 112

 Score =  215 bits (547), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 110/112 (98%), Positives = 111/112 (99%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEAAVDDSIVERALEAIEAAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IEAAVDD+IVERALEAIE AARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL
Sbjct: 61  IEAAVDDAIVERALEAIETAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112


>ref|YP_004754806.1| nitrogen regulatory protein P-II [Collimonas fungivorans Ter331]
 gb|AEK63983.1| Nitrogen regulatory protein P-II [Collimonas fungivorans Ter331]
          Length = 112

 Score =  203 bits (517), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 104/112 (92%), Positives = 109/112 (97%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEAAVDDSIVERALEAIEAAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IEAAVDDSI+E+A+EAIE AARTGKIGDGKIFV DL +VIRIRTGETGKDA+
Sbjct: 61  IEAAVDDSILEQAVEAIENAARTGKIGDGKIFVFDLQEVIRIRTGETGKDAI 112


>ref|YP_001098507.1| nitrogen regulatory protein P-II 2 [Herminiimonas arsenicoxydans]
 emb|CAL60378.1| Nitrogen regulatory protein P-II 2 [Herminiimonas arsenicoxydans]
          Length = 112

 Score =  202 bits (515), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 103/112 (91%), Positives = 108/112 (96%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEAAVDDSIVERALEAIEAAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IEAAVDD+IV+RA+EAIE AARTGKIGDGKIFV DL  V+RIRTGETGK+AL
Sbjct: 61  IEAAVDDAIVDRAIEAIETAARTGKIGDGKIFVYDLQQVVRIRTGETGKEAL 112


>ref|ZP_08275437.1| Nitrogen regulatory protein P-II [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF31102.1| Nitrogen regulatory protein P-II [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 112

 Score =  202 bits (515), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 103/112 (91%), Positives = 108/112 (96%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEAAVDDSIVERALEAIEAAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IEAAVDD+IV+RA+EAIE AARTGKIGDGKIFV DL  V+RIRTGETGK+AL
Sbjct: 61  IEAAVDDAIVDRAIEAIETAARTGKIGDGKIFVYDLQHVVRIRTGETGKEAL 112


>ref|YP_001351859.1| nitrogen regulatory protein PII [Janthinobacterium sp. Marseille]
 gb|ABR90055.1| Nitrogen regulatory protein PII [Janthinobacterium sp. Marseille]
          Length = 112

 Score =  201 bits (511), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 102/112 (91%), Positives = 107/112 (95%)

Query: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60
           MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK
Sbjct: 1   MKLITAIIKPFKLDEVREALSAIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKTK 60

Query: 61  IEAAVDDSIVERALEAIEAAARTGKIGDGKIFVQDLLDVIRIRTGETGKDAL 112
           IEAAVDD+IV+R +EAIE AARTGKIGDGKIFV DL  V+RIRTGETGK+AL
Sbjct: 61  IEAAVDDAIVDRVIEAIETAARTGKIGDGKIFVYDLQQVVRIRTGETGKEAL 112