BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0338.p (423 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754796.1| AmpG-like permease [Collimonas fungivorans T... 670 0.0 ref|YP_003773531.1| muropeptide permease of the major facilitato... 649 0.0 ref|ZP_04577537.1| conserved hypothetical protein [Oxalobacter f... 592 e-167 ref|ZP_04579690.1| major facilitator transporter [Oxalobacter fo... 555 e-156 ref|YP_003052290.1| major facilitator superfamily protein [Methy... 535 e-150 >ref|YP_004754796.1| AmpG-like permease [Collimonas fungivorans Ter331] gb|AEK63973.1| AmpG-like permease [Collimonas fungivorans Ter331] Length = 418 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/415 (79%), Positives = 372/415 (89%) Query: 1 MTDNRISWHSYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKALGLFALVMFP 60 MT + WH YLNRRMLIC FLGF+SGLPLFILLSLLQAWL+KSGL+VKALGLFALVMFP Sbjct: 1 MTSDSNPWHHYLNRRMLICAFLGFSSGLPLFILLSLLQAWLSKSGLDVKALGLFALVMFP 60 Query: 61 YTWKFLWSPLMDRFHFGRMGRRRGWMLFTQIGLFFGIGGMGMLDPQTQIGTIAFMASVVA 120 YTWKFLWSPLMDRFHFG++GRRR WM+ TQ LF IGGMGML+P TQ+ TIAFMAS+VA Sbjct: 61 YTWKFLWSPLMDRFHFGKLGRRRSWMMLTQASLFVAIGGMGMLNPHTQVATIAFMASLVA 120 Query: 121 FLSASQDIVVDAYRREILPEEELGLGSAIHVNAYKLSGMVPGALSLVLADLMPWQSVFWI 180 FLSASQDIV+DAYRREILP+ E GLG+AI+VNAYK++GMVPGALSL LAD M WQ+VFWI Sbjct: 121 FLSASQDIVIDAYRREILPDNEQGLGAAINVNAYKVAGMVPGALSLFLADHMSWQAVFWI 180 Query: 181 TAGFMLPGLLCTLAVKEPVVYGVPPKNLREAVVLPFREFVTRGGWSKALWVLAFIFLYKL 240 TAGFMLPGL+CTL +KEP VYG PPKNLR+AVVLPF+EF+ R GW ALWVLAFIFLYKL Sbjct: 181 TAGFMLPGLVCTLMIKEPAVYGAPPKNLRQAVVLPFQEFIARDGWRSALWVLAFIFLYKL 240 Query: 241 GDSMATALATKFYIDLGFSMTQIGVVSKTTSLWASVVGGIIGGVWMIRLGINKALWVFGV 300 GDSMATALAT+FYIDLGFS+TQIGV+SKTTSLWAS+VGG++GG+WM+++GIN+ALW+FGV Sbjct: 241 GDSMATALATRFYIDLGFSLTQIGVISKTTSLWASLVGGLVGGIWMMQIGINRALWIFGV 300 Query: 301 VQAVAILGFAWLAQVGASTVALAVVIGIEAFGVGLGTAAFVAYIMRETDPRYTATQFALF 360 VQAV ILGFAWLAQ G + LA+VIG EAFGVGLGTAAFVAYI R TDPRYTATQ+ALF Sbjct: 301 VQAVTILGFAWLAQTGPDPLVLAIVIGGEAFGVGLGTAAFVAYIARTTDPRYTATQYALF 360 Query: 361 TSLAAVPRTFVNSSVGYIVAYMGWFNFFILCFILALPGMVMLLKIAPWNHVEHRP 415 TSLAAVPRTF+NSSVGYIVA GWF+FFILCF+LALPGM++L K+APWN P Sbjct: 361 TSLAAVPRTFINSSVGYIVAETGWFHFFILCFVLALPGMLILFKVAPWNEKSENP 415 >ref|YP_003773531.1| muropeptide permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] gb|ADJ61623.1| muropeptide permease of the major facilitator superfamily protein [Herbaspirillum seropedicae SmR1] Length = 388 Score = 649 bits (1674), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/388 (86%), Positives = 350/388 (90%) Query: 1 MTDNRISWHSYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKALGLFALVMFP 60 MT SWH YLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVK LGLFALVMFP Sbjct: 1 MTAPAASWHQYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKTLGLFALVMFP 60 Query: 61 YTWKFLWSPLMDRFHFGRMGRRRGWMLFTQIGLFFGIGGMGMLDPQTQIGTIAFMASVVA 120 YTWKF+WSPLMDRFHFG MGRRRGWM+FTQ+ LF IGGMGMLDP T + TIAFMASVVA Sbjct: 61 YTWKFVWSPLMDRFHFGGMGRRRGWMVFTQLLLFLSIGGMGMLDPLTDVSTIAFMASVVA 120 Query: 121 FLSASQDIVVDAYRREILPEEELGLGSAIHVNAYKLSGMVPGALSLVLADLMPWQSVFWI 180 FLSASQDI +DAYRREILPE ELGLGSAIHVNAYKLSGMVPGALSLVLAD MPW +VFWI Sbjct: 121 FLSASQDIAIDAYRREILPEAELGLGSAIHVNAYKLSGMVPGALSLVLADQMPWPTVFWI 180 Query: 181 TAGFMLPGLLCTLAVKEPVVYGVPPKNLREAVVLPFREFVTRGGWSKALWVLAFIFLYKL 240 TA FMLPGLLC+L VKEP VYG PPK+L EAVVLPFREF+ RGGW ALWVL FIFLYKL Sbjct: 181 TAAFMLPGLLCSLLVKEPKVYGTPPKSLTEAVVLPFREFIARGGWGNALWVLGFIFLYKL 240 Query: 241 GDSMATALATKFYIDLGFSMTQIGVVSKTTSLWASVVGGIIGGVWMIRLGINKALWVFGV 300 GDSMATALATKFYIDLGFSMT+IGVVSKTTSLWASV GGIIGG+WM+RLGIN+ LWVFGV Sbjct: 241 GDSMATALATKFYIDLGFSMTEIGVVSKTTSLWASVAGGIIGGIWMVRLGINRGLWVFGV 300 Query: 301 VQAVAILGFAWLAQVGASTVALAVVIGIEAFGVGLGTAAFVAYIMRETDPRYTATQFALF 360 +QAV ILGFAWLA VGA+ LAVVIG+EAFGVGLGT AFVAYIMRETDPRYTATQFALF Sbjct: 301 LQAVPILGFAWLAHVGANLPVLAVVIGLEAFGVGLGTTAFVAYIMRETDPRYTATQFALF 360 Query: 361 TSLAAVPRTFVNSSVGYIVAYMGWFNFF 388 TSL AVPRTFVNSSVGYIVA GW NFF Sbjct: 361 TSLMAVPRTFVNSSVGYIVADTGWLNFF 388 >ref|ZP_04577537.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gb|EEO28499.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 412 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 294/407 (72%), Positives = 347/407 (85%) Query: 7 SWHSYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKALGLFALVMFPYTWKFL 66 W + + R+LICVFLGF+SGLPLFILL+LLQAWL KSGLNV+ALGLFALVMFPYTWKFL Sbjct: 6 KWKAMFDPRLLICVFLGFSSGLPLFILLTLLQAWLTKSGLNVQALGLFALVMFPYTWKFL 65 Query: 67 WSPLMDRFHFGRMGRRRGWMLFTQIGLFFGIGGMGMLDPQTQIGTIAFMASVVAFLSASQ 126 W+PLMDR+ F +GRRRGWM TQ+GLF IG +GMLDP+ Q+ + + + +AFLS+SQ Sbjct: 66 WAPLMDRYAFRWLGRRRGWMALTQVGLFVSIGLLGMLDPREQLVLVGLLTTFIAFLSSSQ 125 Query: 127 DIVVDAYRREILPEEELGLGSAIHVNAYKLSGMVPGALSLVLADLMPWQSVFWITAGFML 186 DIVVDAYRRE+LP+EE GLGSAIHVNAY++SGMVPGALSL+LAD+M WQ+VFWITA FML Sbjct: 126 DIVVDAYRRELLPDEEQGLGSAIHVNAYRVSGMVPGALSLILADMMSWQAVFWITAAFML 185 Query: 187 PGLLCTLAVKEPVVYGVPPKNLREAVVLPFREFVTRGGWSKALWVLAFIFLYKLGDSMAT 246 PGL+CTL ++EPV++G PPK +REAVVLPF EF+ R GW AL +L FIFLYKLGDS+AT Sbjct: 186 PGLVCTLVIREPVIHGAPPKTIREAVVLPFTEFIGRAGWKSALLILTFIFLYKLGDSLAT 245 Query: 247 ALATKFYIDLGFSMTQIGVVSKTTSLWASVVGGIIGGVWMIRLGINKALWVFGVVQAVAI 306 ALATKFY+DLGF+MTQIGV++KTT WAS++GG++GGVW+I LGIN+ALWVFG VQA+AI Sbjct: 246 ALATKFYLDLGFTMTQIGVIAKTTGFWASLIGGLLGGVWIIGLGINRALWVFGAVQALAI 305 Query: 307 LGFAWLAQVGASTVALAVVIGIEAFGVGLGTAAFVAYIMRETDPRYTATQFALFTSLAAV 366 LGF+WL+ A V LA VIG EAFGVGLGTAAFVAYI + TD RYTATQFALFTSLAAV Sbjct: 306 LGFSWLSMGKADPVLLAFVIGFEAFGVGLGTAAFVAYIAKTTDERYTATQFALFTSLAAV 365 Query: 367 PRTFVNSSVGYIVAYMGWFNFFILCFILALPGMVMLLKIAPWNHVEH 413 PRTF+N+S GYIV GWF FF LCFILALPGM++L KIAPW + Sbjct: 366 PRTFINASAGYIVDMTGWFMFFNLCFILALPGMLLLPKIAPWRQKQE 412 >ref|ZP_04579690.1| major facilitator transporter [Oxalobacter formigenes OXCC13] gb|EEO30663.1| major facilitator transporter [Oxalobacter formigenes OXCC13] Length = 417 Score = 555 bits (1431), Expect = e-156, Method: Compositional matrix adjust. Identities = 288/407 (70%), Positives = 346/407 (85%) Query: 7 SWHSYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKALGLFALVMFPYTWKFL 66 W + L+ R+LICVFLGF+SGLPLFILL+LLQAWL KSGL++K+LGLFALVMFPYTWKFL Sbjct: 6 KWKAILDPRLLICVFLGFSSGLPLFILLTLLQAWLTKSGLSIKSLGLFALVMFPYTWKFL 65 Query: 67 WSPLMDRFHFGRMGRRRGWMLFTQIGLFFGIGGMGMLDPQTQIGTIAFMASVVAFLSASQ 126 W+PLMDR+ F +GRRRGWM TQI LFF IG +G LDP T++ +A + +V+AFLS+SQ Sbjct: 66 WAPLMDRYSFPLLGRRRGWMALTQILLFFCIGFLGWLDPVTELTMVAILTTVIAFLSSSQ 125 Query: 127 DIVVDAYRREILPEEELGLGSAIHVNAYKLSGMVPGALSLVLADLMPWQSVFWITAGFML 186 DIVVDA+RRE+LP+EE GLGSAIHVNAY++SGMVPGALSL+LAD+M W VFW+TA FML Sbjct: 126 DIVVDAFRRELLPDEEQGLGSAIHVNAYRVSGMVPGALSLILADMMSWSGVFWVTAAFML 185 Query: 187 PGLLCTLAVKEPVVYGVPPKNLREAVVLPFREFVTRGGWSKALWVLAFIFLYKLGDSMAT 246 PGL+CTL + EP ++G PPK +REAVVLPF EF+ R GW AL++L+FIFLYKLGDS+AT Sbjct: 186 PGLICTLVISEPKIHGAPPKTIREAVVLPFTEFIGRAGWKSALFILSFIFLYKLGDSLAT 245 Query: 247 ALATKFYIDLGFSMTQIGVVSKTTSLWASVVGGIIGGVWMIRLGINKALWVFGVVQAVAI 306 ALATKFY+DLGF+MTQIGV++KTT WAS++GG++GG+W+I LGIN+ALWVFG VQA+AI Sbjct: 246 ALATKFYLDLGFTMTQIGVIAKTTGFWASLIGGLLGGIWIIGLGINRALWVFGAVQALAI 305 Query: 307 LGFAWLAQVGASTVALAVVIGIEAFGVGLGTAAFVAYIMRETDPRYTATQFALFTSLAAV 366 LGF+W++ G + + LA VIG EAFGV LGTAAFVAYI TD RYTATQFALFTSLAAV Sbjct: 306 LGFSWMSLEGPNPMLLAAVIGFEAFGVSLGTAAFVAYIATTTDERYTATQFALFTSLAAV 365 Query: 367 PRTFVNSSVGYIVAYMGWFNFFILCFILALPGMVMLLKIAPWNHVEH 413 PRTF+N+S GYIV GWF FF LCFILALPGM++L KIAPW H Sbjct: 366 PRTFINASAGYIVDQTGWFMFFNLCFILALPGMMLLPKIAPWRQKRH 412 >ref|YP_003052290.1| major facilitator superfamily protein [Methylovorus glucosetrophus SIP3-4] gb|ACT51763.1| major facilitator superfamily MFS_1 [Methylovorus glucosetrophus SIP3-4] Length = 432 Score = 535 bits (1378), Expect = e-150, Method: Compositional matrix adjust. Identities = 265/414 (64%), Positives = 329/414 (79%), Gaps = 4/414 (0%) Query: 10 SYLNRRMLICVFLGFTSGLPLFILLSLLQAWLAKSGLNVKALGLFALVMFPYTWKFLWSP 69 + LNRRMLIC+F GF+SGLPLFIL+SLL AWL G+++KA+GLFAL+ P+TWKF+W+P Sbjct: 21 ALLNRRMLICIFTGFSSGLPLFILISLLPAWLRSEGVDLKAIGLFALIQLPFTWKFIWAP 80 Query: 70 LMDRFHFGRMGRRRGWMLFTQIGLFFGIGGMGMLDPQTQIGTIAFMASVVAFLSASQDIV 129 L DR+ MGRRRGW+L TQI L I G L P I TIA++A+VVAF SASQD+V Sbjct: 81 LFDRY-IPPMGRRRGWLLVTQIALLVSIPLFGKLHPVLDIWTIAYLAAVVAFFSASQDVV 139 Query: 130 VDAYRREILPEEELGLGSAIHVNAYKLSGMVPGALSLVLADLMPWQSVFWITAGFMLPGL 189 +DAYRREILP+ ELGLG+ IHVNAYK++G++PG+LSL+LAD M W SVF ITA FMLPG+ Sbjct: 140 IDAYRREILPDAELGLGNVIHVNAYKIAGLIPGSLSLILADHMAWDSVFLITALFMLPGM 199 Query: 190 LCTLAVKEPVVYGVPPKNLREAVVLPFREFVTRGGWSKALWVLAFIFLYKLGDSMATALA 249 + TL VKEP + P+ L AVV PF EF+ R GW AL +LAFIFLYKLGDSMA ALA Sbjct: 200 VMTLLVKEPELKPGRPRTLAAAVVEPFNEFIHRNGWRSALLILAFIFLYKLGDSMAVALA 259 Query: 250 TKFYIDLGFSMTQIGVVSKTTSLWASVVGGIIGGVWMIRLGINKALWVFGVVQAVAILGF 309 T FY+D+GFS T+IG+++K LW SV+GG++GG+WM+RLGI+++LW+FG VQ +AILGF Sbjct: 260 TPFYLDMGFSKTEIGLIAKNAGLWPSVIGGLLGGIWMVRLGIHRSLWLFGAVQMLAILGF 319 Query: 310 AWLAQVGASTVALAVVIGIEAFGVGLGTAAFVAYIMRETDPRYTATQFALFTSLAAVPRT 369 AWLA VG + L VVIG+EAFGVGLGTAAFVAYI + T P YTATQFALFTSLAAVPRT Sbjct: 320 AWLAVVGHDLLWLGVVIGVEAFGVGLGTAAFVAYIAQTTHPLYTATQFALFTSLAAVPRT 379 Query: 370 FVNSSVGYIVAYMGWFNFFILCFILALPGMVMLLKIAPWNHVEHRPKTTVGIRE 423 F N++ GY+V +GW NFF+LCF+ A+PGM++LLKIAPW+ +P T IR+ Sbjct: 380 FANATTGYLVDMLGWVNFFLLCFVAAIPGMLLLLKIAPWH---GKPLATPSIRD 430