BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0335.p         (196 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773534.1| transcription antitermination protein [Herba...   380   e-104
ref|YP_001355115.1| transcription antitermination protein NusG [...   348   3e-94
ref|YP_004751049.1| transcription antitermination protein [Colli...   343   8e-93
emb|CAL63287.2| Transcription antitermination protein NusG [Herm...   341   3e-92
ref|YP_560684.1| transcription antitermination protein NusG [Bur...   323   1e-86

>ref|YP_003773534.1| transcription antitermination protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ61626.1| transcription antitermination protein [Herbaspirillum seropedicae
           SmR1]
          Length = 196

 Score =  380 bits (976), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 181/196 (92%), Positives = 192/196 (97%)

Query: 1   MSDSTQDSAPIGAQSVSSASKKRWYVVHAYSGMEKSVQRALTERIVRAGMEEQFGQILVP 60
           MSDSTQDSAPIGAQSVS A KKRWYVVHAYSGMEKSVQRALTERI RAGM+EQFGQILVP
Sbjct: 1   MSDSTQDSAPIGAQSVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVP 60

Query: 61  TEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTSKVTGFIGGKSNRPTPIPP 120
           TEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNT+KVTGFIGGKSNRPTP+PP
Sbjct: 61  TEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPP 120

Query: 121 HEVDKIMQQMQDGIEKPRPKVLYEVGELVRIKDGPFTDFNGNVEEVNYEKSRVRVSVTIF 180
           HEVD +++QMQ+G+EKPRPKVLYEVGE+VRIK+GPFTDFNGNVEEVNYEKSRVRVSVTIF
Sbjct: 121 HEVDSLLRQMQEGVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIF 180

Query: 181 GRATPVELEFGQVEKV 196
           GRATPVELEFGQ+EKV
Sbjct: 181 GRATPVELEFGQLEKV 196


>ref|YP_001355115.1| transcription antitermination protein NusG [Janthinobacterium sp.
           Marseille]
 gb|ABR88512.1| Transcription antiterminator [Janthinobacterium sp. Marseille]
          Length = 199

 Score =  348 bits (892), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 165/179 (92%), Positives = 175/179 (97%)

Query: 18  SASKKRWYVVHAYSGMEKSVQRALTERIVRAGMEEQFGQILVPTEEVVDMKNGHKSVTER 77
           S SKKRWYVVHAYSGMEKSVQRAL ER  RAGME++FGQILVPTEEV+++KNGHKSV+ER
Sbjct: 21  STSKKRWYVVHAYSGMEKSVQRALIERAARAGMEDKFGQILVPTEEVIEVKNGHKSVSER 80

Query: 78  RFFPGYVLVEMEMTDETWHLVKNTSKVTGFIGGKSNRPTPIPPHEVDKIMQQMQDGIEKP 137
           RFFPGYVLVEMEMTDETWHLVKNT+KVTGFIGGKSN+PTPIPPHEVDKIMQQMQDG+EKP
Sbjct: 81  RFFPGYVLVEMEMTDETWHLVKNTNKVTGFIGGKSNKPTPIPPHEVDKIMQQMQDGVEKP 140

Query: 138 RPKVLYEVGELVRIKDGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 196
           RPKVLYEVGELVRIKDGPFTDFNGNVEEVNYEKS+VRVSVTIFGRATPVELEFGQVEKV
Sbjct: 141 RPKVLYEVGELVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 199


>ref|YP_004751049.1| transcription antitermination protein [Collimonas fungivorans
           Ter331]
 gb|AEK60226.1| Transcription antitermination protein [Collimonas fungivorans
           Ter331]
          Length = 199

 Score =  343 bits (880), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 171/199 (85%), Positives = 183/199 (91%), Gaps = 3/199 (1%)

Query: 1   MSDSTQDSAP---IGAQSVSSASKKRWYVVHAYSGMEKSVQRALTERIVRAGMEEQFGQI 57
           MSDSTQD A      A   ++A KKRWYVVHAYSGMEKSVQRALTERI RAGM+EQFGQI
Sbjct: 1   MSDSTQDDAQGTPAAATPSAAAGKKRWYVVHAYSGMEKSVQRALTERIDRAGMQEQFGQI 60

Query: 58  LVPTEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTSKVTGFIGGKSNRPTP 117
           LVPTEEV+++KNG K+VTERRFFPGYVLVEMEMTDETWHLVKNT+KVTGFIGGKSN+PTP
Sbjct: 61  LVPTEEVIEVKNGQKAVTERRFFPGYVLVEMEMTDETWHLVKNTNKVTGFIGGKSNKPTP 120

Query: 118 IPPHEVDKIMQQMQDGIEKPRPKVLYEVGELVRIKDGPFTDFNGNVEEVNYEKSRVRVSV 177
           IP HEVDKIMQQMQDGIEKPRPKVLYEVGELVRIK+G FTDFNGNVEEVNYEKSRVRV+V
Sbjct: 121 IPQHEVDKIMQQMQDGIEKPRPKVLYEVGELVRIKEGAFTDFNGNVEEVNYEKSRVRVTV 180

Query: 178 TIFGRATPVELEFGQVEKV 196
           TIFGRATPVELEF +VEKV
Sbjct: 181 TIFGRATPVELEFDKVEKV 199


>emb|CAL63287.2| Transcription antitermination protein NusG [Herminiimonas
           arsenicoxydans]
          Length = 192

 Score =  341 bits (875), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 162/176 (92%), Positives = 173/176 (98%)

Query: 21  KKRWYVVHAYSGMEKSVQRALTERIVRAGMEEQFGQILVPTEEVVDMKNGHKSVTERRFF 80
           KKRWYVVHAYSGMEKSV RALTERI RAGM++QFGQILVPTEEV+++KNG KSV+ERRFF
Sbjct: 17  KKRWYVVHAYSGMEKSVMRALTERIARAGMQDQFGQILVPTEEVIEVKNGQKSVSERRFF 76

Query: 81  PGYVLVEMEMTDETWHLVKNTSKVTGFIGGKSNRPTPIPPHEVDKIMQQMQDGIEKPRPK 140
           PGYVLVEMEMTDETWHLVKNTSKVTGFIGGKSN+PTPIPPHEVDKIMQQMQ+G+EKPRPK
Sbjct: 77  PGYVLVEMEMTDETWHLVKNTSKVTGFIGGKSNKPTPIPPHEVDKIMQQMQEGVEKPRPK 136

Query: 141 VLYEVGELVRIKDGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 196
           VLYEVGE+VRIKDGPFTDFNGNVEEVNYEKS+VRVSVTIFGRATPVELEFGQVEKV
Sbjct: 137 VLYEVGEMVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 192


>ref|YP_560684.1| transcription antitermination protein NusG [Burkholderia xenovorans
           LB400]
 ref|YP_001897271.1| transcription antitermination protein NusG [Burkholderia
           phytofirmans PsJN]
 ref|ZP_06846028.1| NusG antitermination factor [Burkholderia sp. Ch1-1]
 ref|YP_003908492.1| NusG antitermination factor [Burkholderia sp. CCGE1003]
 ref|YP_004229768.1| NusG antitermination factor [Burkholderia sp. CCGE1001]
 gb|ABE32632.1| transcription antitermination protein nusG [Burkholderia xenovorans
           LB400]
 gb|ACD18047.1| NusG antitermination factor [Burkholderia phytofirmans PsJN]
 gb|EFG66354.1| NusG antitermination factor [Burkholderia sp. Ch1-1]
 gb|ADN59201.1| NusG antitermination factor [Burkholderia sp. CCGE1003]
 gb|ADX56708.1| NusG antitermination factor [Burkholderia sp. CCGE1001]
          Length = 185

 Score =  323 bits (827), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 153/180 (85%), Positives = 169/180 (93%)

Query: 17  SSASKKRWYVVHAYSGMEKSVQRALTERIVRAGMEEQFGQILVPTEEVVDMKNGHKSVTE 76
           +S S KRWYVVHAYSGMEKSVQRAL ERI RAGM++QFGQILVPTEEVV++K GHKSVTE
Sbjct: 6   ASPSGKRWYVVHAYSGMEKSVQRALQERIERAGMQDQFGQILVPTEEVVEVKGGHKSVTE 65

Query: 77  RRFFPGYVLVEMEMTDETWHLVKNTSKVTGFIGGKSNRPTPIPPHEVDKIMQQMQDGIEK 136
           RRFFPGYVLVEMEMTDETWHLVKNT+KVTGF+GG  NRP+PI P EV+KIM QMQ+G+EK
Sbjct: 66  RRFFPGYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEK 125

Query: 137 PRPKVLYEVGELVRIKDGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 196
           PRPK L+EVGE+VR+KDGPFTDFNG+VEEVNYEKSRVRVSVTIFGRATPVELEFGQVEK+
Sbjct: 126 PRPKTLFEVGEMVRVKDGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185