BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0317.p         (206 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004751062.1| 50S ribosomal protein L4p (L1e) [Collimonas ...   405   e-111
ref|YP_001355100.1| large subunit ribosomal protein L4 [Janthino...   405   e-111
ref|YP_001101395.1| 50S ribosomal protein L4 [Herminiimonas arse...   398   e-109
ref|YP_003773549.1| 50S ribosomal protein L4 [Herbaspirillum ser...   391   e-107
ref|ZP_08272689.1| LSU ribosomal protein L4p (L1e) [Oxalobactera...   377   e-103

>ref|YP_004751062.1| 50S ribosomal protein L4p (L1e) [Collimonas fungivorans Ter331]
 gb|AEK60239.1| LSU ribosomal protein L4p (L1e) [Collimonas fungivorans Ter331]
          Length = 206

 Score =  405 bits (1041), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 193/206 (93%), Positives = 200/206 (97%)

Query: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60
           MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT
Sbjct: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60

Query: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE 120
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENF+HKVNKKMYRAG+CSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGLCSILSQLARE 120

Query: 121 GRLSIVENFSVEAPKTKLLSEKLKVMGLDSVLVITDNLEENLLLASRNLPNVLIVEPRQA 180
           GRLS+VENFSVEAPKTKLLS+KLK MGLDSVLVITDNLEENLLLASRNLP  L+ EPR A
Sbjct: 121 GRLSVVENFSVEAPKTKLLSQKLKTMGLDSVLVITDNLEENLLLASRNLPGFLVCEPRHA 180

Query: 181 DPVSLVFYKKVLITKQALAKIEELLA 206
           DPVSLVFYKK+LITK ALAKIEE+LA
Sbjct: 181 DPVSLVFYKKILITKLALAKIEEMLA 206


>ref|YP_001355100.1| large subunit ribosomal protein L4 [Janthinobacterium sp.
           Marseille]
 sp|A6T3K3.1|RL4_JANMA RecName: Full=50S ribosomal protein L4
 gb|ABR89135.1| large subunit ribosomal protein L4 [Janthinobacterium sp.
           Marseille]
          Length = 206

 Score =  405 bits (1040), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 194/206 (94%), Positives = 201/206 (97%)

Query: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60
           MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT
Sbjct: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60

Query: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE 120
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE 120

Query: 121 GRLSIVENFSVEAPKTKLLSEKLKVMGLDSVLVITDNLEENLLLASRNLPNVLIVEPRQA 180
           GRLS++EN SVEAPKTKLLS+KLK MGLDSVLVITD+L+ENLLLASRNLPNVLI EPR A
Sbjct: 121 GRLSVIENLSVEAPKTKLLSQKLKGMGLDSVLVITDSLDENLLLASRNLPNVLICEPRHA 180

Query: 181 DPVSLVFYKKVLITKQALAKIEELLA 206
           DPVSLVFYKK+LITK ALAKIEE+LA
Sbjct: 181 DPVSLVFYKKILITKLALAKIEEMLA 206


>ref|YP_001101395.1| 50S ribosomal protein L4 [Herminiimonas arsenicoxydans]
 sp|A4G9T7.1|RL4_HERAR RecName: Full=50S ribosomal protein L4
 emb|CAL63274.1| 50S ribosomal subunit protein L4 [Herminiimonas arsenicoxydans]
          Length = 206

 Score =  398 bits (1022), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 189/206 (91%), Positives = 201/206 (97%)

Query: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60
           MELKLLNDQGQ++SNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT
Sbjct: 1   MELKLLNDQGQSSSNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60

Query: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE 120
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAG+CSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGLCSILSQLARE 120

Query: 121 GRLSIVENFSVEAPKTKLLSEKLKVMGLDSVLVITDNLEENLLLASRNLPNVLIVEPRQA 180
           GRLS++E+ SV+APKTKLLS+KLK MGLDSVLVITD+L+ENLLLASRNLPNVLI EPR A
Sbjct: 121 GRLSVIESLSVDAPKTKLLSQKLKGMGLDSVLVITDSLDENLLLASRNLPNVLICEPRHA 180

Query: 181 DPVSLVFYKKVLITKQALAKIEELLA 206
           DPVSLVFYKK+LITK ALAKIEE+LA
Sbjct: 181 DPVSLVFYKKILITKLALAKIEEMLA 206


>ref|YP_003773549.1| 50S ribosomal protein L4 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61641.1| 50S ribosomal subunit L4 protein [Herbaspirillum seropedicae SmR1]
          Length = 206

 Score =  391 bits (1004), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/206 (90%), Positives = 199/206 (96%)

Query: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60
           MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEV HTT
Sbjct: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60

Query: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE 120
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENF+HKVNKKMYRAGVCSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120

Query: 121 GRLSIVENFSVEAPKTKLLSEKLKVMGLDSVLVITDNLEENLLLASRNLPNVLIVEPRQA 180
           GRLS+VE F+VEAPKTKLL++KLK MG++SVLVITD+L+E LLLASRNLP VL+VEPRQA
Sbjct: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180

Query: 181 DPVSLVFYKKVLITKQALAKIEELLA 206
           DPVSLV++K VLITK ALAKIEELLA
Sbjct: 181 DPVSLVYFKNVLITKPALAKIEELLA 206


>ref|ZP_08272689.1| LSU ribosomal protein L4p (L1e) [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF33841.1| LSU ribosomal protein L4p (L1e) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 207

 Score =  377 bits (968), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/207 (86%), Positives = 196/207 (94%), Gaps = 1/207 (0%)

Query: 1   MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60
           MELKLLNDQGQAAS+VAAPDTIFGRDYNEALIHQVVVAYQANARSGN KQK+REEVHHTT
Sbjct: 1   MELKLLNDQGQAASDVAAPDTIFGRDYNEALIHQVVVAYQANARSGNSKQKNREEVHHTT 60

Query: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE 120
           KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPD+N+SHKVNKKMYRAG+CSILSQLARE
Sbjct: 61  KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDQNYSHKVNKKMYRAGLCSILSQLARE 120

Query: 121 GRLSIVENFSVEAPKTKLLSEKLKVMG-LDSVLVITDNLEENLLLASRNLPNVLIVEPRQ 179
           GR+S++E  S+EAPKTKLLS KLK MG L+SVL+I D ++ENL LASRNLP+VLIVEPR 
Sbjct: 121 GRISVIEEISLEAPKTKLLSSKLKEMGLLESVLIIADTIDENLALASRNLPHVLIVEPRH 180

Query: 180 ADPVSLVFYKKVLITKQALAKIEELLA 206
           ADPVSLVFYKK++ITK ALAKIEE+LA
Sbjct: 181 ADPVSLVFYKKIVITKAALAKIEEMLA 207