BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0315.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773551.1| 50S ribosomal protein L2 [Herbaspirillum ser...   253   8e-66
ref|ZP_04577848.1| large subunit ribosomal protein L2 [Oxalobact...   238   3e-61
ref|YP_004751064.1| 50S ribosomal protein L2p (L8e) [Collimonas ...   237   4e-61
ref|ZP_04579998.1| large subunit ribosomal protein L2 [Oxalobact...   237   5e-61
ref|YP_001355098.1| 50S ribosomal protein L2 [Janthinobacterium ...   236   6e-61

>ref|YP_003773551.1| 50S ribosomal protein L2 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61643.1| 50S ribosomal subunit L2 protein [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  253 bits (645), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 121/132 (91%), Positives = 128/132 (96%), Gaps = 1/132 (0%)

Query: 1   MVKVVS-DLYKGRPFAGLIEKKSKTAGRNNNGHITTRHIGGGHKQHYRVIDFRRNKDGIV 59
           MVKVV+ DLYKGRP A L+EKKSKTAGRNNNGHITTRHIGGGHKQHYRV+DFRRNKDGI 
Sbjct: 16  MVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQHYRVVDFRRNKDGIP 75

Query: 60  AKVERIEYDPNRTAHIALLCYADGERKYIIAPKGIAVGDQLISGSEAPIKAGNSLPIRNI 119
           AKVERIEYDPNRTAHIALLCYADGERKYIIAPKG++VGDQLISGSEAPIK+GN+LPIRNI
Sbjct: 76  AKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGSEAPIKSGNTLPIRNI 135

Query: 120 PVGTTIHCVEML 131
           PVGTTIHCVEML
Sbjct: 136 PVGTTIHCVEML 147


>ref|ZP_04577848.1| large subunit ribosomal protein L2 [Oxalobacter formigenes HOxBLS]
 gb|EEO28810.1| large subunit ribosomal protein L2 [Oxalobacter formigenes HOxBLS]
          Length = 275

 Score =  238 bits (606), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/132 (83%), Positives = 127/132 (96%), Gaps = 1/132 (0%)

Query: 1   MVKVVS-DLYKGRPFAGLIEKKSKTAGRNNNGHITTRHIGGGHKQHYRVIDFRRNKDGIV 59
           MVK+V+ DLYKGRPFAGL+EKKSK+AGRNNNG ITTRH+GGGHKQHYRVIDF RNKDGI 
Sbjct: 16  MVKLVNPDLYKGRPFAGLVEKKSKSAGRNNNGRITTRHLGGGHKQHYRVIDFVRNKDGIA 75

Query: 60  AKVERIEYDPNRTAHIALLCYADGERKYIIAPKGIAVGDQLISGSEAPIKAGNSLPIRNI 119
           AKVERIEYDPNRTA+IAL+CYADGER+YIIAPKG++VGDQ+++GSEAPI+AGN LP+RNI
Sbjct: 76  AKVERIEYDPNRTANIALVCYADGERRYIIAPKGLSVGDQVMNGSEAPIRAGNCLPLRNI 135

Query: 120 PVGTTIHCVEML 131
           PVGTT+HC+EML
Sbjct: 136 PVGTTLHCIEML 147


>ref|YP_004751064.1| 50S ribosomal protein L2p (L8e) [Collimonas fungivorans Ter331]
 gb|AEK60241.1| LSU ribosomal protein L2p (L8e) [Collimonas fungivorans Ter331]
          Length = 275

 Score =  237 bits (605), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 115/132 (87%), Positives = 124/132 (93%), Gaps = 1/132 (0%)

Query: 1   MVKVVS-DLYKGRPFAGLIEKKSKTAGRNNNGHITTRHIGGGHKQHYRVIDFRRNKDGIV 59
           MVKVV+ DLYKGRPFA LIEKKSKTAGRNNNGHITTRHIGGGHKQHYR+IDF+R KDGI 
Sbjct: 16  MVKVVNPDLYKGRPFAALIEKKSKTAGRNNNGHITTRHIGGGHKQHYRLIDFKRTKDGIP 75

Query: 60  AKVERIEYDPNRTAHIALLCYADGERKYIIAPKGIAVGDQLISGSEAPIKAGNSLPIRNI 119
           AKVERIEYDPNRTA+IALLCYADGER YIIA KG+AVGDQ++SGSEAPIK+GN LPIRNI
Sbjct: 76  AKVERIEYDPNRTANIALLCYADGERHYIIATKGMAVGDQVMSGSEAPIKSGNCLPIRNI 135

Query: 120 PVGTTIHCVEML 131
           PVGT +HCVEML
Sbjct: 136 PVGTILHCVEML 147


>ref|ZP_04579998.1| large subunit ribosomal protein L2 [Oxalobacter formigenes OXCC13]
 gb|EEO30971.1| large subunit ribosomal protein L2 [Oxalobacter formigenes OXCC13]
          Length = 275

 Score =  237 bits (604), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 110/132 (83%), Positives = 126/132 (95%), Gaps = 1/132 (0%)

Query: 1   MVKVVS-DLYKGRPFAGLIEKKSKTAGRNNNGHITTRHIGGGHKQHYRVIDFRRNKDGIV 59
           MVK+V+ DLYKGRP   LIEKKSK+AGRNNNGHITTRH+GGGHKQHYRVIDF RNKDGIV
Sbjct: 16  MVKLVNPDLYKGRPLPALIEKKSKSAGRNNNGHITTRHLGGGHKQHYRVIDFVRNKDGIV 75

Query: 60  AKVERIEYDPNRTAHIALLCYADGERKYIIAPKGIAVGDQLISGSEAPIKAGNSLPIRNI 119
           AKVERIEYDPNRTA+IALLCYADGER+YI+AP+G++VGDQ+++GSEAPIKAGN LP+RNI
Sbjct: 76  AKVERIEYDPNRTANIALLCYADGERRYILAPRGLSVGDQVMNGSEAPIKAGNCLPLRNI 135

Query: 120 PVGTTIHCVEML 131
           PVGTT+HC+EML
Sbjct: 136 PVGTTLHCIEML 147


>ref|YP_001355098.1| 50S ribosomal protein L2 [Janthinobacterium sp. Marseille]
 sp|A6T3K1.1|RL2_JANMA RecName: Full=50S ribosomal protein L2
 gb|ABR89006.1| large subunit ribosomal protein L2 [Janthinobacterium sp.
           Marseille]
          Length = 275

 Score =  236 bits (603), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 114/132 (86%), Positives = 125/132 (94%), Gaps = 1/132 (0%)

Query: 1   MVKVV-SDLYKGRPFAGLIEKKSKTAGRNNNGHITTRHIGGGHKQHYRVIDFRRNKDGIV 59
           MVKVV +DLYKGRPFAGL+EKKSKTAGRNNNGHITTRHIGGGHKQHYRVIDF+R KDGI 
Sbjct: 16  MVKVVNADLYKGRPFAGLLEKKSKTAGRNNNGHITTRHIGGGHKQHYRVIDFKRTKDGIP 75

Query: 60  AKVERIEYDPNRTAHIALLCYADGERKYIIAPKGIAVGDQLISGSEAPIKAGNSLPIRNI 119
           AKVERIEYDPNRTA+IAL+ YADGER+YIIA KG+AVGDQL++GSEAPIK+GN LPIRNI
Sbjct: 76  AKVERIEYDPNRTANIALVLYADGERQYIIATKGMAVGDQLMNGSEAPIKSGNCLPIRNI 135

Query: 120 PVGTTIHCVEML 131
           PVGT +HCVEML
Sbjct: 136 PVGTVMHCVEML 147