BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0311.p (272 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773554.1| 30S ribosomal protein S3 [Herbaspirillum ser... 498 e-139 ref|YP_001355095.1| small subunit ribosomal protein S3 [Janthino... 467 e-130 ref|YP_004751067.1| 30S ribosomal protein S3p (S3e) [Collimonas ... 457 e-127 ref|YP_001101390.1| 30S ribosomal protein S3 [Herminiimonas arse... 451 e-125 ref|ZP_04580001.1| small subunit ribosomal protein S3 [Oxalobact... 437 e-121 >ref|YP_003773554.1| 30S ribosomal protein S3 [Herbaspirillum seropedicae SmR1] gb|ADJ61646.1| 30S ribosomal subunit S3 protein [Herbaspirillum seropedicae SmR1] Length = 272 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 250/272 (91%), Positives = 255/272 (93%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFASMLNEDLKVRAYLKTKLKNASVGRVVIERP 60 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFA MLNEDLKVRAYLK KLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKAALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIEVLK+ALAKLMGVPVHVNIEEIRKPEADAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 Query: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 QQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIAR EWYREGRVPLHTLRA Sbjct: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAQTTYGIIGIKVWVYKGDRLANGDAPVLVGEPEDDKKRRGPRRDDGKPGARP 240 DIDYGFGEA+TTYGIIG+KVWVYKGDRLANG++PVLVGEPEDDKKRRGPRRDDGKPGARP Sbjct: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRRGPRRDDGKPGARP 240 Query: 241 RPKTAGAPAGAGAKRAPRQTADAGVSAEKAGE 272 R KT AGA Q ADAGVSAEKAGE Sbjct: 241 RSKTGAPGAGAKRGGGRPQAADAGVSAEKAGE 272 >ref|YP_001355095.1| small subunit ribosomal protein S3 [Janthinobacterium sp. Marseille] sp|A6T3J8.1|RS3_JANMA RecName: Full=30S ribosomal protein S3 gb|ABR89136.1| small subunit ribosomal protein S3 [Janthinobacterium sp. Marseille] Length = 283 Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust. Identities = 238/283 (84%), Positives = 249/283 (87%), Gaps = 11/283 (3%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFASMLNEDLKVRAYLKTKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV+RNW SRWYAGN+NFA+MLNEDLKVRAYLKTKLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVSRNWASRWYAGNSNFATMLNEDLKVRAYLKTKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKAALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIEVLK+AL K+MGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALTKMMGVPVHVNIEEIRKPETDAQLIADSI 120 Query: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAQTTYGIIGIKVWVYKGDRLANGDAPVLVGEPEDDKKRRGPRRDDGKPGARP 240 DIDYGFGEA+TTYGIIGIKVWVYKGDRLANG+APV+ +DDKKRRGPRRDDGKP RP Sbjct: 181 DIDYGFGEAETTYGIIGIKVWVYKGDRLANGEAPVIDVASDDDKKRRGPRRDDGKPSGRP 240 Query: 241 R-PKTAGAPAGAGAK----------RAPRQTADAGVSAEKAGE 272 R P+ G P A + P DA VSAEKAGE Sbjct: 241 RAPRPEGQPGAAAPGSAPAAKRVRAKKPDGAVDAAVSAEKAGE 283 >ref|YP_004751067.1| 30S ribosomal protein S3p (S3e) [Collimonas fungivorans Ter331] gb|AEK60244.1| SSU ribosomal protein S3p (S3e) [Collimonas fungivorans Ter331] Length = 280 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 225/245 (91%), Positives = 231/245 (94%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFASMLNEDLKVRAYLKTKLKNASVGRVVIERP 60 MGQKIHPTGFRLAVTRNWGSRWYAGN+NFA ML EDLKVRA+LK KLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNSNFAQMLGEDLKVRAFLKKKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKAALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIEVLK+AL KLMGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALTKLMGVPVHVNIEEIRKPEIDAQLIADSI 120 Query: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIAR EWYREGRVPLHTLRA Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAQTTYGIIGIKVWVYKGDRLANGDAPVLVGEPEDDKKRRGPRRDDGKPGARP 240 DIDYGFGEA+TTYGIIGIKVWVYKGDRLANGDAPV+ +DDKKRRGPRRDDGKP RP Sbjct: 181 DIDYGFGEAETTYGIIGIKVWVYKGDRLANGDAPVIDVPNDDDKKRRGPRRDDGKPAGRP 240 Query: 241 RPKTA 245 R KT Sbjct: 241 RAKTT 245 >ref|YP_001101390.1| 30S ribosomal protein S3 [Herminiimonas arsenicoxydans] sp|A4G9T2.1|RS3_HERAR RecName: Full=30S ribosomal protein S3 emb|CAL63269.1| 30S ribosomal protein S3 [Herminiimonas arsenicoxydans] Length = 283 Score = 451 bits (1161), Expect = e-125, Method: Compositional matrix adjust. Identities = 229/287 (79%), Positives = 243/287 (84%), Gaps = 19/287 (6%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFASMLNEDLKVRAYLKTKLKNASVGRVVIERP 60 MGQKIHPTGFRL+VTRNW SRWYAGN+NFA+MLNEDLKVRAYLKTKLKNASVGRV+IERP Sbjct: 1 MGQKIHPTGFRLSVTRNWASRWYAGNSNFATMLNEDLKVRAYLKTKLKNASVGRVIIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKAALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIEVLK+AL K+MGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALTKMMGVPVHVNIEEIRKPETDAQLIADSI 120 Query: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAQTTYGIIGIKVWVYKGDRLANGDAPVLVGEPEDDKKRRGPRRDDGKPGARP 240 +IDYGFGEA+TTYGIIGIKVWVYKGDRL +G+ PV + + EDD KRRGPRRDDGKP +RP Sbjct: 181 EIDYGFGEAETTYGIIGIKVWVYKGDRLPSGEPPVDLTK-EDDTKRRGPRRDDGKPSSRP 239 Query: 241 RPKTAGAPAGAGAK---------------RAPRQTADAGVSAEKAGE 272 R P G + P D V AEKAGE Sbjct: 240 R---TARPEGQPGAAAAPGAAPAAKRVRAKKPDAAVDGAVPAEKAGE 283 >ref|ZP_04580001.1| small subunit ribosomal protein S3 [Oxalobacter formigenes OXCC13] gb|EEO30974.1| small subunit ribosomal protein S3 [Oxalobacter formigenes OXCC13] Length = 282 Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust. Identities = 216/259 (83%), Positives = 228/259 (88%), Gaps = 4/259 (1%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFASMLNEDLKVRAYLKTKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV RNW SRWYAGN NFA MLNEDLK RAYLK KLKNASVG+VVIERP Sbjct: 1 MGQKIHPTGFRLAVARNWSSRWYAGNTNFAGMLNEDLKARAYLKKKLKNASVGQVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKAALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNAR TIYSSRPGVVIGKKGEDIEVLK+ L+K+MGVPVHVNIEE+RKPE AQLIADSI Sbjct: 61 AKNARFTIYSSRPGVVIGKKGEDIEVLKSDLSKIMGVPVHVNIEEVRKPEIHAQLIADSI 120 Query: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 QQLEKRIMFRRAM+RAMQNAMRLGA GIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA Sbjct: 121 TQQLEKRIMFRRAMRRAMQNAMRLGAVGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAQTTYGIIGIKVWVYKGDRLANGDAPVLVGEPEDDKKRRGPRRDDGKPGARP 240 DIDYGF EAQTTYGIIG+KVWVYKGDRL NG+AP + E+DKKRRGPRR+DG+PG R Sbjct: 181 DIDYGFSEAQTTYGIIGVKVWVYKGDRLENGEAPKIEAPAEEDKKRRGPRREDGRPGGRQ 240 Query: 241 RPKTAGAPA----GAGAKR 255 R K A A AGAKR Sbjct: 241 RVKKADGAASEAPSAGAKR 259