BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0306.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773559.1| 50S ribosomal protein L24 [Herbaspirillum se...   181   3e-44
ref|YP_001355090.1| large subunit ribosomal protein L24 [Janthin...   175   2e-42
ref|YP_004751072.1| 50S ribosomal protein L24p (L26e) [Collimona...   175   2e-42
ref|YP_001101385.1| 50S ribosomal protein L24 [Herminiimonas ars...   174   4e-42
ref|ZP_08274061.1| LSU ribosomal protein L24p (L26e) [Oxalobacte...   167   5e-40

>ref|YP_003773559.1| 50S ribosomal protein L24 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61651.1| 50S ribosomal subunit L24 protein [Herbaspirillum seropedicae SmR1]
          Length = 104

 Score =  181 bits (460), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 91/104 (87%), Positives = 96/104 (92%)

Query: 1   MGKIRKNDEVIVLTGKDKGKRGVVTQRVSADYVVVDGINVAKKATKPNPMTGATGGIVDK 60
           M KIRKNDEVIVLTGKDKGKRGVVT RV  DYVVV+G+NVAKKAT+PNPMTGATGGIVDK
Sbjct: 1   MAKIRKNDEVIVLTGKDKGKRGVVTARVGTDYVVVEGVNVAKKATRPNPMTGATGGIVDK 60

Query: 61  LMPIHVSNLALFNATAGKADRVGYKSVDGKKVRAYKSSGEVVKV 104
           LMPIHVSN+ALFNA  GKADRV YK VDGKKVRAYKS+GEVVKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVKV 104


>ref|YP_001355090.1| large subunit ribosomal protein L24 [Janthinobacterium sp.
           Marseille]
 sp|A6T3J3.1|RL24_JANMA RecName: Full=50S ribosomal protein L24
 gb|ABR88279.1| large subunit ribosomal protein L24 [Janthinobacterium sp.
           Marseille]
          Length = 104

 Score =  175 bits (443), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 88/104 (84%), Positives = 95/104 (91%)

Query: 1   MGKIRKNDEVIVLTGKDKGKRGVVTQRVSADYVVVDGINVAKKATKPNPMTGATGGIVDK 60
           M KIRK+DEVIVLTGKDKGKRGVV +RV A+YVVV+G+NVAKKATKPNPMTGATGGIVDK
Sbjct: 1   MDKIRKSDEVIVLTGKDKGKRGVVQRRVDANYVVVEGVNVAKKATKPNPMTGATGGIVDK 60

Query: 61  LMPIHVSNLALFNATAGKADRVGYKSVDGKKVRAYKSSGEVVKV 104
           LMPIHVSN+ALFNA  GKADR G+K VDGKKVR YKSSGE VKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRAGFKDVDGKKVRVYKSSGEAVKV 104


>ref|YP_004751072.1| 50S ribosomal protein L24p (L26e) [Collimonas fungivorans Ter331]
 gb|AEK60249.1| LSU ribosomal protein L24p (L26e) [Collimonas fungivorans Ter331]
          Length = 104

 Score =  175 bits (443), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/104 (83%), Positives = 96/104 (92%)

Query: 1   MGKIRKNDEVIVLTGKDKGKRGVVTQRVSADYVVVDGINVAKKATKPNPMTGATGGIVDK 60
           M KIRK+DEVIVLTGKDKGKRGVV QRV A++VVV+G+NVAKKATKPNPMTG TGGI+DK
Sbjct: 1   MDKIRKSDEVIVLTGKDKGKRGVVKQRVDANHVVVEGVNVAKKATKPNPMTGVTGGIIDK 60

Query: 61  LMPIHVSNLALFNATAGKADRVGYKSVDGKKVRAYKSSGEVVKV 104
           LMPIHVSN+ALFNA  GKADRVG+K VDGKKVR +KSSGEVVKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRVGFKDVDGKKVRVFKSSGEVVKV 104


>ref|YP_001101385.1| 50S ribosomal protein L24 [Herminiimonas arsenicoxydans]
 sp|A4G9S7.1|RL24_HERAR RecName: Full=50S ribosomal protein L24
 emb|CAL63264.1| 50S ribosomal subunit protein L24 [Herminiimonas arsenicoxydans]
          Length = 104

 Score =  174 bits (441), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/104 (83%), Positives = 95/104 (91%)

Query: 1   MGKIRKNDEVIVLTGKDKGKRGVVTQRVSADYVVVDGINVAKKATKPNPMTGATGGIVDK 60
           M KIRK+DEVIVLTGKDKGKRGVV +RV A+Y+VV+G+NVAKKATKPNPMTGATGGIVDK
Sbjct: 1   MDKIRKSDEVIVLTGKDKGKRGVVQRRVDANYLVVEGVNVAKKATKPNPMTGATGGIVDK 60

Query: 61  LMPIHVSNLALFNATAGKADRVGYKSVDGKKVRAYKSSGEVVKV 104
           LMPIHVSN+ALFNA  GKADR G+K VDGKKVR YKSSGE VKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRAGFKDVDGKKVRVYKSSGEAVKV 104


>ref|ZP_08274061.1| LSU ribosomal protein L24p (L26e) [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32463.1| LSU ribosomal protein L24p (L26e) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 104

 Score =  167 bits (423), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 83/104 (79%), Positives = 92/104 (88%)

Query: 1   MGKIRKNDEVIVLTGKDKGKRGVVTQRVSADYVVVDGINVAKKATKPNPMTGATGGIVDK 60
           M KI+KNDEVIVL GKDKGKRG + +RV AD+V+VDGINVAKKATKPNPMTG TGGIVDK
Sbjct: 1   MDKIKKNDEVIVLAGKDKGKRGTILKRVDADHVLVDGINVAKKATKPNPMTGTTGGIVDK 60

Query: 61  LMPIHVSNLALFNATAGKADRVGYKSVDGKKVRAYKSSGEVVKV 104
           LMPIHVSN+ALFNA  GKADRVG+K+VDG  VR +KSSGE VKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRVGFKTVDGGLVRIFKSSGEAVKV 104