BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0303.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001355087.1| small subunit ribosomal protein S8 [Janthino...   254   2e-66
ref|YP_001101382.1| 30S ribosomal protein S8 [Herminiimonas arse...   252   1e-65
ref|YP_004751075.1| 30S ribosomal protein S8p (S15Ae) [Collimona...   252   1e-65
ref|YP_003773562.1| 30S ribosomal protein S8 [Herbaspirillum ser...   245   1e-63
ref|ZP_04946822.1| 30S ribosomal protein S8 [Burkholderia dolosa...   230   5e-59

>ref|YP_001355087.1| small subunit ribosomal protein S8 [Janthinobacterium sp.
           Marseille]
 sp|A6T3J0.1|RS8_JANMA RecName: Full=30S ribosomal protein S8
 gb|ABR89087.1| small subunit ribosomal protein S8 [Janthinobacterium sp.
           Marseille]
          Length = 131

 Score =  254 bits (650), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/131 (96%), Positives = 129/131 (98%)

Query: 1   MSMSDPIADMLTRIRNAQVVQKTTVAMPSSKVKIAIANVLKDEGYIEDFAVAEAGGKAEL 60
           MSMSDPIADMLTRIRNAQVVQKT+VAMPSSKVKIAIANVLKDEGYIEDFAV EA GKAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQVVQKTSVAMPSSKVKIAIANVLKDEGYIEDFAVTEAAGKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDEIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
           KIGLKYYAGRPVIERLERVSRPGLRIYKGKD+IPNVMNGLGVAIVSTP+GVMTDRKARAT
Sbjct: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPKGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131


>ref|YP_001101382.1| 30S ribosomal protein S8 [Herminiimonas arsenicoxydans]
 sp|A4G9S4.1|RS8_HERAR RecName: Full=30S ribosomal protein S8
 emb|CAL63261.1| 30S ribosomal protein S8 [Herminiimonas arsenicoxydans]
          Length = 131

 Score =  252 bits (643), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 124/131 (94%), Positives = 129/131 (98%)

Query: 1   MSMSDPIADMLTRIRNAQVVQKTTVAMPSSKVKIAIANVLKDEGYIEDFAVAEAGGKAEL 60
           MSMSDPIADMLTRIRNAQVVQKT+VAMPSSKVKIAIANVLKDEGYIED+AV EA GKAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQVVQKTSVAMPSSKVKIAIANVLKDEGYIEDYAVTEAAGKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDEIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
           KIGLKYYAGRPVIERLERVSRPGLR+YKGKD+IPNVMNGLGVAIVSTP+GVMTDRKARAT
Sbjct: 61  KIGLKYYAGRPVIERLERVSRPGLRVYKGKDDIPNVMNGLGVAIVSTPKGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131


>ref|YP_004751075.1| 30S ribosomal protein S8p (S15Ae) [Collimonas fungivorans Ter331]
 gb|AEK60252.1| SSU ribosomal protein S8p (S15Ae) [Collimonas fungivorans Ter331]
          Length = 131

 Score =  252 bits (643), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 125/131 (95%), Positives = 128/131 (97%)

Query: 1   MSMSDPIADMLTRIRNAQVVQKTTVAMPSSKVKIAIANVLKDEGYIEDFAVAEAGGKAEL 60
           MSMSDPIADMLTRIRNAQVV KTTVAMPSSKVKIAIANVLKDEGYIEDFAVAE GGKAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQVVHKTTVAMPSSKVKIAIANVLKDEGYIEDFAVAEEGGKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDEIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
           KIGLKYYAGRPVIERL+RVSRPGLRIYKGKD+IPNVMNGLGVAI+STP GVMTDRKARAT
Sbjct: 61  KIGLKYYAGRPVIERLDRVSRPGLRIYKGKDDIPNVMNGLGVAIISTPAGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131


>ref|YP_003773562.1| 30S ribosomal protein S8 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61654.1| 30S ribosomal subunit S8 protein [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score =  245 bits (626), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 123/131 (93%), Positives = 125/131 (95%)

Query: 1   MSMSDPIADMLTRIRNAQVVQKTTVAMPSSKVKIAIANVLKDEGYIEDFAVAEAGGKAEL 60
           MSMSDPIADMLTRIRNAQ V KTTV MPSSKVK+AIANVLKDEGYIEDFAV  A GKAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQGVNKTTVVMPSSKVKVAIANVLKDEGYIEDFAVVAADGKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDEIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
           KIGLKYYAGRPVIERLERVSRPGLRIYKGKD+IPNVMNGLGVAIVSTPRGVMTDRKARAT
Sbjct: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPRGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131


>ref|ZP_04946822.1| 30S ribosomal protein S8 [Burkholderia dolosa AUO158]
 gb|EAY69993.1| 30S ribosomal protein S8 [Burkholderia dolosa AUO158]
          Length = 131

 Score =  230 bits (587), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 111/131 (84%), Positives = 122/131 (93%)

Query: 1   MSMSDPIADMLTRIRNAQVVQKTTVAMPSSKVKIAIANVLKDEGYIEDFAVAEAGGKAEL 60
           MSMSDPIADMLTRIRNAQ+V+K +VAMPSSKVK+AIA VLKDEGYI+DFAV   G KAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQMVEKVSVAMPSSKVKVAIAQVLKDEGYIDDFAVKSEGAKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDEIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
            I LKYYAGRPVIERLERVS+PGLR+Y+G++EIP VMNGLGVAIVSTP+GVMTDRKARAT
Sbjct: 61  NIALKYYAGRPVIERLERVSKPGLRVYRGRNEIPQVMNGLGVAIVSTPKGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131