BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0302.p         (177 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773563.1| 50S ribosomal protein L6 [Herbaspirillum ser...   334   4e-90
ref|YP_004751076.1| 50S ribosomal protein L6p (L9e) [Collimonas ...   330   4e-89
ref|YP_001355086.1| large subunit ribosomal protein L6 [Janthino...   325   1e-87
ref|YP_001101381.1| 50S ribosomal protein L6 [Herminiimonas arse...   314   3e-84
ref|ZP_08274153.1| LSU ribosomal protein L6p (L9e) [Oxalobactera...   284   5e-75

>ref|YP_003773563.1| 50S ribosomal protein L6 [Herbaspirillum seropedicae SmR1]
 emb|CAM32699.1| 50S ribosomal subunit protein L6/L9E [Herbaspirillum seropedicae]
 gb|ADJ61655.1| 50S ribosomal subunit L6 protein [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score =  334 bits (856), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 163/177 (92%), Positives = 169/177 (95%)

Query: 1   MSRVGKMPIALPGGAEATITAAQITVKGPLGSLSQPLTGLVKVANNNGTLNFEVADDSRE 60
           MSRVGKMP+ALP GAEATITA QITVKGPLGSL+QPLT  VKV NNNG+L+FEVADDSRE
Sbjct: 1   MSRVGKMPVALPSGAEATITAEQITVKGPLGSLTQPLTKKVKVVNNNGSLSFEVADDSRE 60

Query: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPQG 120
           ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMP G
Sbjct: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPAG 120

Query: 121 IKCETPTQTEILIKGIDRQVVGQVAAEIRAYRQPEPYKGKGVRYSDEVVVLKETKKK 177
           IK ETPTQTEILIKGIDRQVVGQVAAEIRAYR+PEPYKGKGVRY+DEVV LKETKKK
Sbjct: 121 IKVETPTQTEILIKGIDRQVVGQVAAEIRAYREPEPYKGKGVRYADEVVTLKETKKK 177


>ref|YP_004751076.1| 50S ribosomal protein L6p (L9e) [Collimonas fungivorans Ter331]
 gb|AEK60253.1| LSU ribosomal protein L6p (L9e) [Collimonas fungivorans Ter331]
          Length = 190

 Score =  330 bits (847), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 160/177 (90%), Positives = 167/177 (94%)

Query: 1   MSRVGKMPIALPGGAEATITAAQITVKGPLGSLSQPLTGLVKVANNNGTLNFEVADDSRE 60
           MSRVGKMPIALP GAEATITAAQITVKGPLGSLSQ L GLVK+ NNNGTLNF  ADDSRE
Sbjct: 14  MSRVGKMPIALPTGAEATITAAQITVKGPLGSLSQALNGLVKIENNNGTLNFAAADDSRE 73

Query: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPQG 120
           ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHP+VHQMPQG
Sbjct: 74  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPVVHQMPQG 133

Query: 121 IKCETPTQTEILIKGIDRQVVGQVAAEIRAYRQPEPYKGKGVRYSDEVVVLKETKKK 177
           +   TPTQTEILIKGID+Q VGQVAAE+RAYR+PEPYKGKGVRYSDEVV+LKETKKK
Sbjct: 134 VTVATPTQTEILIKGIDKQRVGQVAAEVRAYREPEPYKGKGVRYSDEVVILKETKKK 190


>ref|YP_001355086.1| large subunit ribosomal protein L6 [Janthinobacterium sp.
           Marseille]
 sp|A6T3I9.1|RL6_JANMA RecName: Full=50S ribosomal protein L6
 gb|ABR88995.1| large subunit ribosomal protein L6 [Janthinobacterium sp.
           Marseille]
          Length = 177

 Score =  325 bits (834), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 157/177 (88%), Positives = 168/177 (94%)

Query: 1   MSRVGKMPIALPGGAEATITAAQITVKGPLGSLSQPLTGLVKVANNNGTLNFEVADDSRE 60
           MSRVGKMPIALP GAEATITAAQITVKGPLGSL+Q L GLV + N+NGTLNF+VA+DSRE
Sbjct: 1   MSRVGKMPIALPSGAEATITAAQITVKGPLGSLTQSLNGLVNIENDNGTLNFKVANDSRE 60

Query: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPQG 120
           ANAMSGTLRALVNNMVNGVTKGFEKKL LVGVG+RA AQGDKLNLSLGFSHP+VHQMPQG
Sbjct: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLTLVGVGYRAAAQGDKLNLSLGFSHPVVHQMPQG 120

Query: 121 IKCETPTQTEILIKGIDRQVVGQVAAEIRAYRQPEPYKGKGVRYSDEVVVLKETKKK 177
           +K ETPTQTEILIKGIDRQ VGQVAAE+RAYR+PEPYKGKGVRYSDEVVV+KETKKK
Sbjct: 121 VKVETPTQTEILIKGIDRQKVGQVAAEVRAYREPEPYKGKGVRYSDEVVVIKETKKK 177


>ref|YP_001101381.1| 50S ribosomal protein L6 [Herminiimonas arsenicoxydans]
 sp|A4G9S3.1|RL6_HERAR RecName: Full=50S ribosomal protein L6
 emb|CAL63260.1| 50S ribosomal subunit protein L6 [Herminiimonas arsenicoxydans]
          Length = 177

 Score =  314 bits (805), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 155/177 (87%), Positives = 163/177 (92%)

Query: 1   MSRVGKMPIALPGGAEATITAAQITVKGPLGSLSQPLTGLVKVANNNGTLNFEVADDSRE 60
           MSRVGKMPIALP GAEATITA QITVKGPLGSLSQ L GLV++ N +GTLNF+ A+DSRE
Sbjct: 1   MSRVGKMPIALPSGAEATITAEQITVKGPLGSLSQALNGLVQIENASGTLNFKPANDSRE 60

Query: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPQG 120
           ANAMSGTLRALVNNMVNGVTKGFEKKL LVGVGFRA AQGDKLNLSLGFSHP+VH MP G
Sbjct: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLMLVGVGFRAAAQGDKLNLSLGFSHPVVHAMPAG 120

Query: 121 IKCETPTQTEILIKGIDRQVVGQVAAEIRAYRQPEPYKGKGVRYSDEVVVLKETKKK 177
           IK ETPTQTEILIKGIDRQ VGQVAAE+RAYR PEPYKGKGVRYSDEVVV+KETKKK
Sbjct: 121 IKVETPTQTEILIKGIDRQSVGQVAAEVRAYRPPEPYKGKGVRYSDEVVVIKETKKK 177


>ref|ZP_08274153.1| LSU ribosomal protein L6p (L9e) [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32383.1| LSU ribosomal protein L6p (L9e) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 177

 Score =  284 bits (726), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 139/177 (78%), Positives = 152/177 (85%)

Query: 1   MSRVGKMPIALPGGAEATITAAQITVKGPLGSLSQPLTGLVKVANNNGTLNFEVADDSRE 60
           MSRVGKM +ALP G EA I+   ITVKGPLG+L Q L GLVK+ N NG+L F  AD SRE
Sbjct: 1   MSRVGKMQLALPSGVEAIISDHAITVKGPLGTLVQSLNGLVKIENINGSLVFSAADVSRE 60

Query: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPQG 120
           ANAM GTLRALV+NMV GVTKGFEKKLNLVGVG+RA AQGDKLNLSLGFSHP+VH MP+G
Sbjct: 61  ANAMWGTLRALVSNMVIGVTKGFEKKLNLVGVGYRAAAQGDKLNLSLGFSHPVVHVMPEG 120

Query: 121 IKCETPTQTEILIKGIDRQVVGQVAAEIRAYRQPEPYKGKGVRYSDEVVVLKETKKK 177
           + C TPTQTEILIKGI+RQ VGQVAAE+RAYR PEPYKGKGVRYSDEVV +KETKKK
Sbjct: 121 VTCATPTQTEILIKGINRQSVGQVAAEVRAYRPPEPYKGKGVRYSDEVVTIKETKKK 177