BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0301.p         (122 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773564.1| 50S ribosomal protein L18 [Herbaspirillum se...   223   6e-57
ref|YP_001355085.1| large subunit ribosomal protein L18 [Janthin...   219   1e-55
ref|YP_004751077.1| 50S ribosomal protein L18p (L5e) [Collimonas...   218   3e-55
ref|ZP_04577861.1| large subunit ribosomal protein L18 [Oxalobac...   194   3e-48
ref|ZP_04580011.1| large subunit ribosomal protein L18 [Oxalobac...   194   3e-48

>ref|YP_003773564.1| 50S ribosomal protein L18 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61656.1| 50S ribosomal subunit L18 protein [Herbaspirillum seropedicae SmR1]
          Length = 120

 Score =  223 bits (569), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 115/120 (95%), Positives = 118/120 (98%)

Query: 3   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASIIGPDANVLASASTLEAEVRQQ 62
           MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYAS+IGPDANVLASASTLEAEVR Q
Sbjct: 1   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDANVLASASTLEAEVRAQ 60

Query: 63  LAGQSGKGGNAAAATLVGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 122
           LAGQ+GKGGNAAAA L+GKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF
Sbjct: 61  LAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 120


>ref|YP_001355085.1| large subunit ribosomal protein L18 [Janthinobacterium sp.
           Marseille]
 sp|A6T3I8.1|RL18_JANMA RecName: Full=50S ribosomal protein L18
 gb|ABR88905.1| large subunit ribosomal protein L18 [Janthinobacterium sp.
           Marseille]
          Length = 120

 Score =  219 bits (557), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/120 (91%), Positives = 113/120 (94%)

Query: 3   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASIIGPDANVLASASTLEAEVRQQ 62
           MDKKQSRLRR  QTRAKIAELKVNRLAVHRTN HIYASIIGPDA VLASASTLEAEVRQ+
Sbjct: 1   MDKKQSRLRRGRQTRAKIAELKVNRLAVHRTNLHIYASIIGPDATVLASASTLEAEVRQE 60

Query: 63  LAGQSGKGGNAAAATLVGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 122
           LAGQSGKGGN AAA LVGKRVAEKALKAG+ EVAFDRSGFRYHGRVKA+AEAAREAGLKF
Sbjct: 61  LAGQSGKGGNVAAAALVGKRVAEKALKAGIAEVAFDRSGFRYHGRVKAVAEAAREAGLKF 120


>ref|YP_004751077.1| 50S ribosomal protein L18p (L5e) [Collimonas fungivorans Ter331]
 gb|AEK60254.1| LSU ribosomal protein L18p (L5e) [Collimonas fungivorans Ter331]
          Length = 122

 Score =  218 bits (554), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/122 (89%), Positives = 115/122 (94%)

Query: 1   LTMDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASIIGPDANVLASASTLEAEVR 60
           +TMDKKQSRLRR+ QTRAKIAELKVNRLAVHRTN HIYASIIGPDA VLASASTLEAEVR
Sbjct: 1   MTMDKKQSRLRRSRQTRAKIAELKVNRLAVHRTNLHIYASIIGPDAKVLASASTLEAEVR 60

Query: 61  QQLAGQSGKGGNAAAATLVGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGL 120
            +LAG+SG GGN AAA+LVGKRVAEKALKAGVTEVAFDRSGFRYHGRVK LA+AAREAGL
Sbjct: 61  AELAGKSGAGGNTAAASLVGKRVAEKALKAGVTEVAFDRSGFRYHGRVKVLADAAREAGL 120

Query: 121 KF 122
           KF
Sbjct: 121 KF 122


>ref|ZP_04577861.1| large subunit ribosomal protein L18 [Oxalobacter formigenes HOxBLS]
 gb|EEO28823.1| large subunit ribosomal protein L18 [Oxalobacter formigenes HOxBLS]
          Length = 118

 Score =  194 bits (494), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 97/120 (80%), Positives = 110/120 (91%), Gaps = 2/120 (1%)

Query: 3   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASIIGPDANVLASASTLEAEVRQQ 62
           M+KKQSRLRR  QTRAKIA LK  RL+VHRTN HIYA++IGPDA +LAS+STLEA++RQ+
Sbjct: 1   MNKKQSRLRRGRQTRAKIAVLKATRLSVHRTNLHIYANVIGPDARILASSSTLEADIRQE 60

Query: 63  LAGQSGKGGNAAAATLVGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 122
           LAG+S  GGN AAA+LVGKRVAEKAL+AG+TEVAFDRSGFRYHGRVKALAEAAREAGLKF
Sbjct: 61  LAGKS--GGNVAAASLVGKRVAEKALQAGITEVAFDRSGFRYHGRVKALAEAAREAGLKF 118


>ref|ZP_04580011.1| large subunit ribosomal protein L18 [Oxalobacter formigenes OXCC13]
 gb|EEO30984.1| large subunit ribosomal protein L18 [Oxalobacter formigenes OXCC13]
          Length = 118

 Score =  194 bits (494), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/120 (81%), Positives = 109/120 (90%), Gaps = 2/120 (1%)

Query: 3   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASIIGPDANVLASASTLEAEVRQQ 62
           M+KKQSRLRR  QTRAKIA LK  RL+VHRTN HIYA++IGPDA +LAS+STLEA++RQQ
Sbjct: 1   MNKKQSRLRRGRQTRAKIAVLKATRLSVHRTNLHIYANVIGPDAKILASSSTLEADIRQQ 60

Query: 63  LAGQSGKGGNAAAATLVGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 122
           L G++G  GN AAATLVGKRVAEKAL+AGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF
Sbjct: 61  LDGKNG--GNVAAATLVGKRVAEKALQAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 118