BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0294.p (143 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773572.1| 30S ribosomal protein S11 [Herbaspirillum se... 258 3e-67 ref|YP_004751085.1| 30S ribosomal protein S11p (S14e) [Collimona... 240 6e-62 ref|ZP_08274692.1| SSU ribosomal protein S11p (S14e) [Oxalobacte... 237 4e-61 ref|YP_001154862.1| 30S ribosomal protein S11 [Polynucleobacter ... 232 2e-59 ref|YP_560647.1| 30S ribosomal protein S11 [Burkholderia xenovor... 232 2e-59 >ref|YP_003773572.1| 30S ribosomal protein S11 [Herbaspirillum seropedicae SmR1] gb|ADJ61664.1| 30S ribosomal subunit S11 protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 132/143 (92%), Positives = 134/143 (93%), Gaps = 9/143 (6%) Query: 1 MAKSPNNAAAARVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 MAKSPNNAAA+RVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS Sbjct: 1 MAKSPNNAAASRVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 Query: 61 RKSTPFAAQVAAEAAGKVAIECGIKNLEVRIKGPGGXPPPPPPGPGRESAVRALNNLGIK 120 RKSTPFAAQVAAE+AGKVAIECGIKNLEVRIKG PGPGRESAVRALNNLGIK Sbjct: 61 RKSTPFAAQVAAESAGKVAIECGIKNLEVRIKG---------PGPGRESAVRALNNLGIK 111 Query: 121 ITQIQDVTPVPHNGCRPPKRRRI 143 ITQIQDVTPVPHNGCRPPKRRRI Sbjct: 112 ITQIQDVTPVPHNGCRPPKRRRI 134 >ref|YP_004751085.1| 30S ribosomal protein S11p (S14e) [Collimonas fungivorans Ter331] gb|AEK60262.1| SSU ribosomal protein S11p (S14e) [Collimonas fungivorans Ter331] Length = 134 Score = 240 bits (612), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 131/143 (91%), Positives = 134/143 (93%), Gaps = 9/143 (6%) Query: 1 MAKSPNNAAAARVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 MAKSPNNAAAARVRKKVKKNVAEGIAH+HASFNNTIITITDRQGNALSWATSGGAGFKGS Sbjct: 1 MAKSPNNAAAARVRKKVKKNVAEGIAHIHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 Query: 61 RKSTPFAAQVAAEAAGKVAIECGIKNLEVRIKGPGGXPPPPPPGPGRESAVRALNNLGIK 120 RKSTPFAAQVAAEAAGKVA+ECG+KNLEVRIKG PGPGRESAVRALNNLGIK Sbjct: 61 RKSTPFAAQVAAEAAGKVAVECGVKNLEVRIKG---------PGPGRESAVRALNNLGIK 111 Query: 121 ITQIQDVTPVPHNGCRPPKRRRI 143 ITQIQDVTPVPHNGCRPPKRRRI Sbjct: 112 ITQIQDVTPVPHNGCRPPKRRRI 134 >ref|ZP_08274692.1| SSU ribosomal protein S11p (S14e) [Oxalobacteraceae bacterium IMCC9480] gb|EGF31836.1| SSU ribosomal protein S11p (S14e) [Oxalobacteraceae bacterium IMCC9480] Length = 134 Score = 237 bits (605), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 128/143 (89%), Positives = 134/143 (93%), Gaps = 9/143 (6%) Query: 1 MAKSPNNAAAARVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 MAK+PNNAA+ARVRKKVKKNVAEGIAH+HASFNNTIITITDRQGNALSWATSGGAGFKGS Sbjct: 1 MAKAPNNAASARVRKKVKKNVAEGIAHIHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 Query: 61 RKSTPFAAQVAAEAAGKVAIECGIKNLEVRIKGPGGXPPPPPPGPGRESAVRALNNLGIK 120 RKSTPFAAQVAAEAAGK+A+ECG+KNLEVRIKG PGPGRESAVRALNNLGIK Sbjct: 61 RKSTPFAAQVAAEAAGKIAVECGVKNLEVRIKG---------PGPGRESAVRALNNLGIK 111 Query: 121 ITQIQDVTPVPHNGCRPPKRRRI 143 ITQIQDVTPVPHNGCRPPKRRRI Sbjct: 112 ITQIQDVTPVPHNGCRPPKRRRI 134 >ref|YP_001154862.1| 30S ribosomal protein S11 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] sp|A4SUY4.1|RS11_POLSQ RecName: Full=30S ribosomal protein S11 gb|ABP33298.1| SSU ribosomal protein S11P [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 135 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 119/144 (82%), Positives = 127/144 (88%), Gaps = 10/144 (6%) Query: 1 MAKSPN-NAAAARVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKG 59 MAK + +AA+ R RKKVKKNVA+GIAHVHASFNNTIITITDRQGNALSWATSGG GFKG Sbjct: 1 MAKQQSASAASQRARKKVKKNVADGIAHVHASFNNTIITITDRQGNALSWATSGGQGFKG 60 Query: 60 SRKSTPFAAQVAAEAAGKVAIECGIKNLEVRIKGPGGXPPPPPPGPGRESAVRALNNLGI 119 SRKSTPFAAQVAAE AGK A+ECGIKNLEV+IKG PGPGRESAVRALN+LGI Sbjct: 61 SRKSTPFAAQVAAEVAGKAAVECGIKNLEVQIKG---------PGPGRESAVRALNSLGI 111 Query: 120 KITQIQDVTPVPHNGCRPPKRRRI 143 KIT+IQDVTPVPHNGCRPPKRRRI Sbjct: 112 KITEIQDVTPVPHNGCRPPKRRRI 135 >ref|YP_560647.1| 30S ribosomal protein S11 [Burkholderia xenovorans LB400] ref|ZP_02886847.1| ribosomal protein S11 [Burkholderia graminis C4D1M] ref|YP_001859033.1| 30S ribosomal protein S11 [Burkholderia phymatum STM815] ref|YP_001897234.1| 30S ribosomal protein S11 [Burkholderia phytofirmans PsJN] ref|ZP_03270075.1| ribosomal protein S11 [Burkholderia sp. H160] ref|YP_003606432.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1002] ref|ZP_06846058.1| 30S ribosomal protein S11 [Burkholderia sp. Ch1-1] ref|YP_003908455.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1003] ref|YP_004229731.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1001] sp|Q13TJ4.1|RS11_BURXL RecName: Full=30S ribosomal protein S11 gb|ABE32595.1| SSU ribosomal protein S11P [Burkholderia xenovorans LB400] gb|EDT07496.1| ribosomal protein S11 [Burkholderia graminis C4D1M] gb|ACC71987.1| ribosomal protein S11 [Burkholderia phymatum STM815] gb|ACD18010.1| ribosomal protein S11 [Burkholderia phytofirmans PsJN] gb|EDZ98324.1| ribosomal protein S11 [Burkholderia sp. H160] gb|ADG16921.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1002] gb|EFG66293.1| 30S ribosomal protein S11 [Burkholderia sp. Ch1-1] gb|ADN59164.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1003] gb|ADX56671.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1001] Length = 134 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 117/143 (81%), Positives = 126/143 (88%), Gaps = 9/143 (6%) Query: 1 MAKSPNNAAAARVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 MAK+ NN+AA RVRKKVKKNVAEG+ HVHASFNNTIITITDRQGNAL+WATSGG GFKGS Sbjct: 1 MAKASNNSAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGS 60 Query: 61 RKSTPFAAQVAAEAAGKVAIECGIKNLEVRIKGPGGXPPPPPPGPGRESAVRALNNLGIK 120 RKSTPFAAQVAAE+AG+VA+E G+KNLEVRIKG PGPGRESAVRAL+ LGIK Sbjct: 61 RKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---------PGPGRESAVRALHGLGIK 111 Query: 121 ITQIQDVTPVPHNGCRPPKRRRI 143 IT I DVTPVPHNGCRPPKRRRI Sbjct: 112 ITAISDVTPVPHNGCRPPKRRRI 134