BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0292.p (334 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751087.1| DNA-directed RNA polymerase subunit alpha [C... 628 e-178 ref|ZP_08274694.1| DNA-directed RNA polymerase alpha subunit [Ox... 625 e-177 ref|YP_003773574.1| DNA-directed RNA polymerase subunit alpha [H... 624 e-177 ref|YP_001101371.1| DNA-directed RNA polymerase subunit alpha [H... 619 e-175 ref|YP_001355075.1| DNA-directed RNA polymerase subunit alpha [J... 618 e-175 >ref|YP_004751087.1| DNA-directed RNA polymerase subunit alpha [Collimonas fungivorans Ter331] gb|AEK60264.1| DNA-directed RNA polymerase alpha subunit [Collimonas fungivorans Ter331] Length = 325 Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust. Identities = 316/334 (94%), Positives = 321/334 (96%), Gaps = 9/334 (2%) Query: 1 MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60 MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSM+GYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGVVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKK+GEG VLASDIDLPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKDGEGAVLASDIDLPHDVEL 120 Query: 121 INPDHVIANLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVS 180 +NPDHVIA+LTAGG LDMQIKVEKGRGYVPGNVRRL+EDANKTIGRIILDASFSPVRRVS Sbjct: 121 VNPDHVIAHLTAGGALDMQIKVEKGRGYVPGNVRRLTEDANKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVINIETNGVIFXPPPPPPPPPEEAIRQSARVLVDQLNVFAALE 240 YAVESARVEQRTDLDKLVINIETNGVI PEEAIRQSARVLVDQLNVFAALE Sbjct: 181 YAVESARVEQRTDLDKLVINIETNGVI---------TPEEAIRQSARVLVDQLNVFAALE 231 Query: 241 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 300 GTEA AEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN Sbjct: 232 GTEAAAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 291 Query: 301 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 334 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK Sbjct: 292 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 325 >ref|ZP_08274694.1| DNA-directed RNA polymerase alpha subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF31838.1| DNA-directed RNA polymerase alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 325 Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust. Identities = 314/334 (94%), Positives = 320/334 (95%), Gaps = 9/334 (2%) Query: 1 MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60 MQNSLLKPRIIEVE LGAGHAKVVMEPFERGYGHTLGNALRRVLLSSM+GYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVETLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGVVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVD+LLNLKGVVFKLHNRDEVTLTLKK+GEG VLASDIDLPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDMLLNLKGVVFKLHNRDEVTLTLKKDGEGAVLASDIDLPHDVEL 120 Query: 121 INPDHVIANLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVS 180 INPDHVIA+LTAGGKLDMQIKVEKGRGYVPGNVRRL+EDANKTIGRIILDASFSPVRRVS Sbjct: 121 INPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLAEDANKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVINIETNGVIFXPPPPPPPPPEEAIRQSARVLVDQLNVFAALE 240 Y+VESARVEQRTDLDKLVINIETNGVI PEEAIRQSARVLVDQLNVFAALE Sbjct: 181 YSVESARVEQRTDLDKLVINIETNGVI---------SPEEAIRQSARVLVDQLNVFAALE 231 Query: 241 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 300 GTEA AEAPSRAP VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN Sbjct: 232 GTEAAAEAPSRAPSVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 291 Query: 301 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 334 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK Sbjct: 292 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 325 >ref|YP_003773574.1| DNA-directed RNA polymerase subunit alpha [Herbaspirillum seropedicae SmR1] emb|CAM32668.1| probable DNA-directed RNA polymerase (alpha chain) protein [Herbaspirillum seropedicae] gb|ADJ61666.1| DNA-directed RNA polymerase alpha chain protein [Herbaspirillum seropedicae SmR1] Length = 325 Score = 624 bits (1608), Expect = e-177, Method: Compositional matrix adjust. Identities = 315/334 (94%), Positives = 317/334 (94%), Gaps = 9/334 (2%) Query: 1 MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60 MQNSLLKPRIIEVE L GHAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGVVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEG VLASDIDLPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 Query: 121 INPDHVIANLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVS 180 INPDHVIANLT GGKLDMQIKVEKGRGYVPGNVRRLSED NKTIGRIILDASFSPVRRVS Sbjct: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVINIETNGVIFXPPPPPPPPPEEAIRQSARVLVDQLNVFAALE 240 YAVESARVEQRTDLDKLV+NIETNGVI PEEAIRQSARVLVDQLNVFAALE Sbjct: 181 YAVESARVEQRTDLDKLVMNIETNGVI---------TPEEAIRQSARVLVDQLNVFAALE 231 Query: 241 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 300 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN Sbjct: 232 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 291 Query: 301 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 334 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK Sbjct: 292 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 325 >ref|YP_001101371.1| DNA-directed RNA polymerase subunit alpha [Herminiimonas arsenicoxydans] sp|A4G9R3.1|RPOA_HERAR RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha emb|CAL63250.1| RNA polymerase, alpha subunit [Herminiimonas arsenicoxydans] Length = 325 Score = 619 bits (1596), Expect = e-175, Method: Compositional matrix adjust. Identities = 312/334 (93%), Positives = 319/334 (95%), Gaps = 9/334 (2%) Query: 1 MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60 MQNSLLKPRIIEVE LGAGHAKVVMEPFERGYGHTLGNALRRVLLSSM+GYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVEVLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGVVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVD+LLNLKGVVFKLHNRD+VTLTLKKEGEG VLASDI+LPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDLLLNLKGVVFKLHNRDDVTLTLKKEGEGAVLASDIELPHDVEL 120 Query: 121 INPDHVIANLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVS 180 +NPDHVIA+LTAGGKLDMQIKVEKGRGYVPGNVRRLSED NKTIGRIILDASFSPVRRVS Sbjct: 121 VNPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVINIETNGVIFXPPPPPPPPPEEAIRQSARVLVDQLNVFAALE 240 YAVESARVEQRTDLDKLVINIETNGVI PEEAIRQSARVLVDQLNVFAALE Sbjct: 181 YAVESARVEQRTDLDKLVINIETNGVI---------TPEEAIRQSARVLVDQLNVFAALE 231 Query: 241 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 300 GTEA A+APSRAP VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN Sbjct: 232 GTEAPADAPSRAPAVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 291 Query: 301 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 334 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK Sbjct: 292 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 325 >ref|YP_001355075.1| DNA-directed RNA polymerase subunit alpha [Janthinobacterium sp. Marseille] sp|A6T3H8.1|RPOA_JANMA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha gb|ABR88933.1| DNA-directed RNA polymerase subunit alpha [Janthinobacterium sp. Marseille] Length = 325 Score = 618 bits (1594), Expect = e-175, Method: Compositional matrix adjust. Identities = 311/334 (93%), Positives = 319/334 (95%), Gaps = 9/334 (2%) Query: 1 MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60 MQNSLLKPRIIEVE LGAGHAKVVMEPFERGYGHTLGNALRRVLLSSM+GYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVEVLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGVVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVD+LLNLKGVVFKLHNRD+VTLTLKK+GEG VLASDI+LPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDLLLNLKGVVFKLHNRDDVTLTLKKDGEGAVLASDIELPHDVEL 120 Query: 121 INPDHVIANLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDANKTIGRIILDASFSPVRRVS 180 +NPDHVIA+LTAGGKLDMQIKVEKGRGYVPGNVRRLSED NKTIGRIILDASFSPVRRVS Sbjct: 121 VNPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVINIETNGVIFXPPPPPPPPPEEAIRQSARVLVDQLNVFAALE 240 YAVESARVEQRTDLDKLVINIETNGVI PEEAIRQSARVLVDQLNVFAALE Sbjct: 181 YAVESARVEQRTDLDKLVINIETNGVI---------SPEEAIRQSARVLVDQLNVFAALE 231 Query: 241 GTEATAEAPSRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 300 GTEA A+APSRAP VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN Sbjct: 232 GTEAPADAPSRAPAVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPN 291 Query: 301 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 334 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK Sbjct: 292 LGRKSLNEIKEVLASRGLTLGMKLENWPPAGLEK 325