BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0285.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773579.1| LysR family transcription regulator protein ... 494 e-138 ref|YP_004378053.1| LysR family transcription regulator protein ... 457 e-127 ref|NP_884341.1| putative regulatory protein [Bordetella paraper... 374 e-102 ref|YP_001267479.1| LysR family transcriptional regulator [Pseud... 362 4e-98 gb|ADR60639.1| LysR family transcriptional regulator [Pseudomona... 362 5e-98 >ref|YP_003773579.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61671.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 252/309 (81%), Positives = 280/309 (90%) Query: 1 MMQEIPSLSSITSRLHLKQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIETTLGAQ 60 M +PSL+SITSRLHL+QLRLLIAL+DHGSLLKAAEQVALTQPGASKALQEIE+TLG Q Sbjct: 1 MHNTLPSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGVQ 60 Query: 61 LFVRTNRGLEATDLGHCVIRYARLIQTDLAHLREDMIGILQGHGGRLALGVIMGAVPLLT 120 LF RTNRGLE T+LGHCVIRYARLIQTDL HLRE+M+ I+QGHGGRLA+G IMGAVPLLT Sbjct: 61 LFTRTNRGLEPTELGHCVIRYARLIQTDLTHLREEMLAIMQGHGGRLAVGTIMGAVPLLT 120 Query: 121 DALTRLLEKRPALSVEIVEDTSARLLRLLDQGRLDMAICRTSISQQPHLYDSIDIHNEKL 180 DALTRLLE PALSVEIVEDTSARLLRLLDQGRLD+AICRTSISQ+P LYD+ +IH E+L Sbjct: 121 DALTRLLEAHPALSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEEL 180 Query: 181 AVVANINHPLAGRETLQLTDLVDSRWVVYSANMPMRLLLEREFHEANLRFPLHLLETTSA 240 AVVA++ HPLA +LQL DL DSRWVVYSANMPMRL LEREFH+A+LRFPLHL+ETTSA Sbjct: 181 AVVASVQHPLADAPSLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSA 240 Query: 241 FTTLSLLQRNPSFVALMSVDVAQFCTRFGMTTILPLPLHSRSEPYQLVTRHGSMRSSVAQ 300 FTTLSLLQ+NP FVAL+SVDVAQFCTRFGMT ILPL LH+RSEPYQLVTR G+M S VA+ Sbjct: 241 FTTLSLLQKNPHFVALLSVDVAQFCTRFGMTRILPLRLHTRSEPYQLVTRRGTMLSPVAR 300 Query: 301 LFIDEFTET 309 LF+D+F T Sbjct: 301 LFLDDFART 309 >ref|YP_004378053.1| LysR family transcription regulator protein [Pseudomonas mendocina NK-01] gb|AEB56301.1| LysR family transcription regulator protein [Pseudomonas mendocina NK-01] Length = 310 Score = 457 bits (1176), Expect = e-127, Method: Compositional matrix adjust. Identities = 231/303 (76%), Positives = 264/303 (87%) Query: 5 IPSLSSITSRLHLKQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIETTLGAQLFVR 64 +PS+SSI SRL +QLRLLIAL + GSL+KAAE V+++QPGA+KALQEIETTLGA LFVR Sbjct: 2 LPSVSSIFSRLRFRQLRLLIALGEQGSLIKAAELVSISQPGATKALQEIETTLGAPLFVR 61 Query: 65 TNRGLEATDLGHCVIRYARLIQTDLAHLREDMIGILQGHGGRLALGVIMGAVPLLTDALT 124 TNRGLEA +LGHC IRYA+LIQTDL HLRE+M+GILQGHGGRL++GVIMGAVP +TDALT Sbjct: 62 TNRGLEANELGHCAIRYAKLIQTDLTHLREEMLGILQGHGGRLSVGVIMGAVPFMTDALT 121 Query: 125 RLLEKRPALSVEIVEDTSARLLRLLDQGRLDMAICRTSISQQPHLYDSIDIHNEKLAVVA 184 RLLE+ P LSVEIVEDTSARLL LLDQGRLD+AICRTSIS+QP YD ID+ +E LAVVA Sbjct: 122 RLLEEHPDLSVEIVEDTSARLLSLLDQGRLDLAICRTSISRQPEQYDCIDVRDETLAVVA 181 Query: 185 NINHPLAGRETLQLTDLVDSRWVVYSANMPMRLLLEREFHEANLRFPLHLLETTSAFTTL 244 N +HPLAGR L+L DL DSRWVVYSANMPMRL LEREF +A LRFPLHLLETTSAFTTL Sbjct: 182 NRDHPLAGRAQLELADLADSRWVVYSANMPMRLSLEREFQQAGLRFPLHLLETTSAFTTL 241 Query: 245 SLLQRNPSFVALMSVDVAQFCTRFGMTTILPLPLHSRSEPYQLVTRHGSMRSSVAQLFID 304 SLLQ+NP VAL+S DVA+FCT FGMT ILPL L SRSEPYQL+TR G SS+++LFI+ Sbjct: 242 SLLQKNPELVALLSTDVARFCTGFGMTCILPLQLKSRSEPYQLITRRGVSLSSISRLFIE 301 Query: 305 EFT 307 + T Sbjct: 302 QLT 304 >ref|NP_884341.1| putative regulatory protein [Bordetella parapertussis 12822] ref|NP_888024.1| regulatory protein [Bordetella bronchiseptica RB50] emb|CAE31976.1| Putative regulatory protein [Bordetella bronchiseptica RB50] emb|CAE37383.1| Putative regulatory protein [Bordetella parapertussis] Length = 315 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 186/303 (61%), Positives = 233/303 (76%) Query: 6 PSLSSITSRLHLKQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIETTLGAQLFVRT 65 P L+SI SRLH+K LRLL+A+ +HGSLL AA++VA++QPGASKALQEIETT GA LFVRT Sbjct: 3 PPLTSIVSRLHIKHLRLLLAIYEHGSLLGAAKEVAISQPGASKALQEIETTFGAALFVRT 62 Query: 66 NRGLEATDLGHCVIRYARLIQTDLAHLREDMIGILQGHGGRLALGVIMGAVPLLTDALTR 125 NRGLEA DLG CV+RYAR+I TDL HLR ++ I +G GGR+A+G IMGA+PLLTDA++ Sbjct: 63 NRGLEANDLGLCVVRYARMIYTDLGHLRNELDAIQKGDGGRVAVGSIMGAIPLLTDAVSD 122 Query: 126 LLEKRPALSVEIVEDTSARLLRLLDQGRLDMAICRTSISQQPHLYDSIDIHNEKLAVVAN 185 L++ P +SVEIVEDTSA LL LLD GRLD+AICRT +++ P LY+S + E+L V+A+ Sbjct: 123 LMQTHPGMSVEIVEDTSAELLGLLDSGRLDLAICRTVVTKSPELYESELLQPEELRVIAS 182 Query: 186 INHPLAGRETLQLTDLVDSRWVVYSANMPMRLLLEREFHEANLRFPLHLLETTSAFTTLS 245 I PLA + L L DL +W+VY ANMPMR+LLEREF++A +RFP +LLETTS F TL+ Sbjct: 183 IGSPLALADELTLQDLAHCKWIVYRANMPMRILLEREFYDAGIRFPTNLLETTSPFATLA 242 Query: 246 LLQRNPSFVALMSVDVAQFCTRFGMTTILPLPLHSRSEPYQLVTRHGSMRSSVAQLFIDE 305 LL+RN SFVAL S DVA F R G+ +ILP RSEPY+LV R GS+ S A+L + Sbjct: 243 LLRRNSSFVALASTDVASFFARNGLVSILPFQFTLRSEPYELVRRRGSLMSIGARLLKER 302 Query: 306 FTE 308 E Sbjct: 303 LLE 305 >ref|YP_001267479.1| LysR family transcriptional regulator [Pseudomonas putida F1] gb|ABQ78295.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 313 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 181/288 (62%), Positives = 218/288 (75%) Query: 6 PSLSSITSRLHLKQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIETTLGAQLFVRT 65 PSL+SI SRLH + LRLLI L +H SLL AA V LTQPGASKALQEIETT G LF RT Sbjct: 3 PSLNSIMSRLHARHLRLLIELDEHRSLLGAASSVGLTQPGASKALQEIETTFGTVLFNRT 62 Query: 66 NRGLEATDLGHCVIRYARLIQTDLAHLREDMIGILQGHGGRLALGVIMGAVPLLTDALTR 125 NRGLE T GHC IRYARL+QTD+A+LR D+ IL+G GGRLA+G IMGAVPLL A+++ Sbjct: 63 NRGLEPTAAGHCAIRYARLLQTDIANLRHDLDAILRGVGGRLAVGAIMGAVPLLMKAVSQ 122 Query: 126 LLEKRPALSVEIVEDTSARLLRLLDQGRLDMAICRTSISQQPHLYDSIDIHNEKLAVVAN 185 L +P +S EI+EDTS LL ++ GRLD+A+CRTS+S P L+ S + +E LAV+AN Sbjct: 123 LASIQPQMSFEIIEDTSQSLLTQIESGRLDIALCRTSVSNTPQLFASTFVQDETLAVIAN 182 Query: 186 INHPLAGRETLQLTDLVDSRWVVYSANMPMRLLLEREFHEANLRFPLHLLETTSAFTTLS 245 I+HPL +L L DL +SRW+VY ANMPMR+ LEREFH+A LRFPLHL+ETTS TLS Sbjct: 183 IDHPLKHAPSLSLADLAESRWIVYRANMPMRVQLEREFHDAGLRFPLHLVETTSILATLS 242 Query: 246 LLQRNPSFVALMSVDVAQFCTRFGMTTILPLPLHSRSEPYQLVTRHGS 293 LLQ P FVAL+S+DVAQ C +ILPL + S S+PY+LVTR GS Sbjct: 243 LLQNRPDFVALVSIDVAQQCAMNQQVSILPLSMASVSDPYELVTRKGS 290 >gb|ADR60639.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 313 Score = 362 bits (928), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 181/288 (62%), Positives = 218/288 (75%) Query: 6 PSLSSITSRLHLKQLRLLIALADHGSLLKAAEQVALTQPGASKALQEIETTLGAQLFVRT 65 PSL+SI SRLH + LRLLI L +H SLL AA V LTQPGASKALQEIETT G LF RT Sbjct: 3 PSLNSIMSRLHARHLRLLIELDEHRSLLGAASSVGLTQPGASKALQEIETTFGTVLFNRT 62 Query: 66 NRGLEATDLGHCVIRYARLIQTDLAHLREDMIGILQGHGGRLALGVIMGAVPLLTDALTR 125 NRGLE T GHC IRYARL+QTD+A+LR D+ IL+G GGRLA+G IMGAVPLL A+++ Sbjct: 63 NRGLEPTAAGHCAIRYARLLQTDIANLRHDLDAILRGVGGRLAVGAIMGAVPLLMKAVSQ 122 Query: 126 LLEKRPALSVEIVEDTSARLLRLLDQGRLDMAICRTSISQQPHLYDSIDIHNEKLAVVAN 185 L +P +S EI+EDTS LL ++ GRLD+A+CRTS+S P L+ S + +E LAV+AN Sbjct: 123 LASIQPQMSFEIIEDTSQSLLTQIESGRLDIALCRTSVSNTPQLFASTFVQDETLAVIAN 182 Query: 186 INHPLAGRETLQLTDLVDSRWVVYSANMPMRLLLEREFHEANLRFPLHLLETTSAFTTLS 245 I+HPL +L L DL +SRW+VY ANMPMR+ LEREFH+A LRFPLHL+ETTS TLS Sbjct: 183 IDHPLKHAPSLSLADLAESRWIVYRANMPMRVQLEREFHDAGLRFPLHLVETTSILATLS 242 Query: 246 LLQRNPSFVALMSVDVAQFCTRFGMTTILPLPLHSRSEPYQLVTRHGS 293 LLQ P FVAL+S+DVAQ C +ILPL + S S+PY+LVTR GS Sbjct: 243 LLQNRPDFVALVSIDVAQQCAMNQQVSILPLSMGSVSDPYELVTRKGS 290