BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0284.p         (211 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase [Herbaspiril...   166   1e-39
ref|ZP_08404355.1| iron-containing alcohol dehydrogenase [Hylemo...   128   5e-28
ref|YP_004378054.1| 4-hydroxybutyrate dehydrogenase [Pseudomonas...   127   1e-27
ref|YP_003277632.1| iron-containing alcohol dehydrogenase [Comam...   126   3e-27
ref|YP_004682323.1| enoyl-CoA hydratase EchA [Cupriavidus necato...   125   3e-27

>ref|YP_003773580.1| 4-hydroxybutyrate dehydrogenase [Herbaspirillum seropedicae SmR1]
 gb|ADJ61672.1| 4-hydroxybutyrate dehydrogenase protein [Herbaspirillum seropedicae
           SmR1]
          Length = 379

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/116 (68%), Positives = 92/116 (79%), Gaps = 4/116 (3%)

Query: 1   MALINYITQVQFDFGALALLQQECDRIGIRKPLIVTDMGIRNAGILDKVVAQLKDGAQVA 60
           MALINYITQVQFD+GALALLQQECDR+GI+KPL+VTDMGIRNAG+LDKV+ QLK+G    
Sbjct: 1   MALINYITQVQFDYGALALLQQECDRLGIKKPLVVTDMGIRNAGLLDKVLGQLKEGVGAV 60

Query: 61  VFDQTPPNPNEAAVRAAVKLFRDSACDGIMTRVALGLIAKIHAARRVHHICGIHRS 116
           V+DQTPPNPNE AVRAAV LFR   CDGI   VA+G  + I  A+ V  +CG H  
Sbjct: 61  VYDQTPPNPNEGAVRAAVALFRQHGCDGI---VAVGGGSSIDLAKGV-AVCGTHEG 112


>ref|ZP_08404355.1| iron-containing alcohol dehydrogenase [Hylemonella gracilis ATCC
           19624]
 gb|EGI78552.1| iron-containing alcohol dehydrogenase [Hylemonella gracilis ATCC
           19624]
          Length = 382

 Score =  128 bits (322), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 75/181 (41%), Positives = 104/181 (57%), Gaps = 16/181 (8%)

Query: 1   MALINYITQVQFDFGALALLQQECDRIGIRKPLIVTDMGIRNAGILDKVVAQLKDG---A 57
           MALI Y+TQVQFDFGA+ LL QEC+R+GI +PL+VTD G+R AGI+D+ +A L  G   A
Sbjct: 1   MALIQYVTQVQFDFGAIRLLAQECERVGITRPLLVTDAGVRAAGIVDRALAALPHGPGKA 60

Query: 58  QVAVFDQTPPNPNEAAVRAAVKLFRDSACDGIMTRVALGLIAKIHAARRVHHICGIHRSR 117
            V VFDQTPPNP EAAVRAA  L+R+  CDG+   +A+G  + I  A+ V  +   H   
Sbjct: 61  AVPVFDQTPPNPTEAAVRAATALYREQRCDGL---IAVGGGSAIDCAKGV-ALMATHDGP 116

Query: 118 RMSQANMRSSTNRRDQLIRTVL---------QEIAYAQLRLGDDADRAGRQRLHRHPRAT 168
               A +   +    + +  ++          E+A   L + DD  + G    H  P+A 
Sbjct: 117 LQRYATIEGGSALITEHVAPLIAVPTTSGTGSEVARGALLILDDHRKLGFHSWHLVPKAA 176

Query: 169 L 169
           +
Sbjct: 177 I 177


>ref|YP_004378054.1| 4-hydroxybutyrate dehydrogenase [Pseudomonas mendocina NK-01]
 gb|AEB56302.1| 4-hydroxybutyrate dehydrogenase [Pseudomonas mendocina NK-01]
          Length = 379

 Score =  127 bits (318), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/116 (56%), Positives = 78/116 (67%), Gaps = 4/116 (3%)

Query: 1   MALINYITQVQFDFGALALLQQECDRIGIRKPLIVTDMGIRNAGILDKVVAQLKDGAQVA 60
           MALINY+TQVQF + AL  L  EC RIGI +P IVTD G+R AGI+DKV+AQL + A   
Sbjct: 1   MALINYLTQVQFGYDALGQLAAECQRIGITRPFIVTDTGVRAAGIVDKVLAQLAEPAVAE 60

Query: 61  VFDQTPPNPNEAAVRAAVKLFRDSACDGIMTRVALGLIAKIHAARRVHHICGIHRS 116
           VFDQTPPNPNE  VRAA   +RD   DGI   +A+G  + I  A+ V  +CG H  
Sbjct: 61  VFDQTPPNPNEGVVRAAAARYRDGGFDGI---IAVGGGSSIDLAKGV-AVCGTHEG 112


>ref|YP_003277632.1| iron-containing alcohol dehydrogenase [Comamonas testosteroni
           CNB-2]
 gb|ACY32336.1| iron-containing alcohol dehydrogenase [Comamonas testosteroni
           CNB-2]
          Length = 378

 Score =  126 bits (316), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 102/178 (57%), Gaps = 14/178 (7%)

Query: 1   MALINYITQVQFDFGALALLQQECDRIGIRKPLIVTDMGIRNAGILDKVVAQLKDGAQVA 60
           MA INY+TQ+QFDFGA+ +L+QEC+R+GI KPLIVTD G++ AGIL K +  L  G   A
Sbjct: 1   MAFINYVTQIQFDFGAVQMLRQECERVGISKPLIVTDPGVKAAGILQKAINALG-GLPHA 59

Query: 61  VFDQTPPNPNEAAVRAAVKLFRDSACDGIMTRVALGLIAKIHAARRVHHICGIHRSRRMS 120
           VFDQTP NP EAAVRAA +++R   CDG+   +A+G  + I  A+ V  I   H      
Sbjct: 60  VFDQTPSNPTEAAVRAAAEIYRSQNCDGL---IAVGGGSAIDCAKGV-AIAATHEGPLSY 115

Query: 121 QANMRSSTNRRDQLIRTVL---------QEIAYAQLRLGDDADRAGRQRLHRHPRATL 169
            A +   + R  + +  ++          E+A   + + DD  + G    H  P+A +
Sbjct: 116 YATIEGGSPRITERVAPLIAVPTTSGTGSEVARGAIIIVDDHRKLGFHSWHLVPKAAI 173


>ref|YP_004682323.1| enoyl-CoA hydratase EchA [Cupriavidus necator N-1]
 gb|AEI81091.1| 1,3-propanediol dehydrogenase DhaT [Cupriavidus necator N-1]
          Length = 379

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 83/114 (72%), Gaps = 4/114 (3%)

Query: 1   MALINYITQVQFDFGALALLQQECDRIGIRKPLIVTDMGIRNAGILDKVVAQLKDGAQVA 60
           MALINYITQ+Q DFGA+ LL QEC+RIGI +PL+VTD G++ AGI+ +V+ QL+ G++  
Sbjct: 1   MALINYITQIQIDFGAIGLLAQECERIGITRPLVVTDAGVKAAGIVQRVLEQLRPGSEAV 60

Query: 61  VFDQTPPNPNEAAVRAAVKLFRDSACDGIMTRVALGLIAKIHAARRVHHICGIH 114
           ++D TP NP EAA+R AV+L+ D  CDGI   +A+G  + I  A+ V  +C  H
Sbjct: 61  IYDGTPSNPTEAAMREAVRLYGDYRCDGI---IAVGGGSPIDLAKGV-AVCATH 110