BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0281.p (400 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773582.1| branched-chain amino acid ABC transporter pe... 743 0.0 ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, a... 596 e-168 ref|YP_443821.1| branched-chain amino acid ABC transporter perip... 566 e-159 ref|YP_560960.1| branched chain amino acid ABC transporter perip... 565 e-159 emb|CAQ17865.1| substrate-binding periplasmic protein (pbp) [Ral... 565 e-159 >ref|YP_003773582.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ61674.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/404 (89%), Positives = 378/404 (93%), Gaps = 4/404 (0%) Query: 1 LKKFLKMAALSAAMCA----AFSGNANAAGDTIKIGFITDLSGTYADMDGQGGIEAIKMA 56 + F++ AALSA CA A +A AAGDTIKIGFITD+SGTYAD DGQGG+EAI+MA Sbjct: 1 MTPFIRRAALSATACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMA 60 Query: 57 IADAGGTINGKKVEFVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAG 116 IADAGG INGKKVE VFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAG Sbjct: 61 IADAGGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAG 120 Query: 117 EKKKVFISVGAGTTRQTNEECNAYTVQYAYDTTALARGTGAAITKQGGKSWYFVTADYAF 176 EKKKVFISVGAGTTRQTNEECNAYT+QYAYDTTALARGTGAAIT+QGGKSWYF+TADYAF Sbjct: 121 EKKKVFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAF 180 Query: 177 GTSLEKDTSDVVKAGGGTVVGQVRAPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAI 236 GTSLEKDTS+VVK+ GG VVG R PLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAI Sbjct: 181 GTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAI 240 Query: 237 KAANEFGVNKTMKLAGLLIFITDTHSLGLQVTQGMYLTDGWYWDMNDQARAWGNRYFGKM 296 KAANEFGVNKTMKLAGLLIFI DTHSLGL +TQGMYLTDGWYWD+NDQ RAW NRYF KM Sbjct: 241 KAANEFGVNKTMKLAGLLIFINDTHSLGLSLTQGMYLTDGWYWDLNDQTRAWANRYFMKM 300 Query: 297 KKMPTMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNKINDFFTSNGVVRPDGRMVH 356 KKMP+MFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKN+INDFFTSNGVVRPDGRMVH Sbjct: 301 KKMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVH 360 Query: 357 DMYLMEVKKPSESKRPWDYYKLVQTIPGDQAYMTKAESKCSLWK 400 DMYLMEVKKPSESKRPWDYYKLVQTIPG+QAYMTKAESKC+LWK Sbjct: 361 DMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 >ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33985.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Oxalobacteraceae bacterium IMCC9480] Length = 409 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 281/394 (71%), Positives = 327/394 (82%), Gaps = 2/394 (0%) Query: 9 ALSAAMCAAFSGNANA--AGDTIKIGFITDLSGTYADMDGQGGIEAIKMAIADAGGTING 66 A+SA AF+G+A+A +GDT+KIGFITD+SG Y+D+DGQGG+EAIKMAIAD GGT+NG Sbjct: 16 AISAVCALAFAGSASAQISGDTVKIGFITDISGLYSDIDGQGGVEAIKMAIADFGGTLNG 75 Query: 67 KKVEFVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFISVG 126 KK+E + ADHQNKADIAA+KAREWFD+ GVDML+GG NS +LAM KVA EKKK FIS+G Sbjct: 76 KKIELISADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTNLAMSKVALEKKKPFISIG 135 Query: 127 AGTTRQTNEECNAYTVQYAYDTTALARGTGAAITKQGGKSWYFVTADYAFGTSLEKDTSD 186 AGT R TNEEC YT+ YAYDT ALA+GTGAA+ KQGGKSW+F+TADYAFG SLE DT+ Sbjct: 136 AGTARLTNEECTPYTLHYAYDTVALAKGTGAAVVKQGGKSWFFLTADYAFGASLENDTTS 195 Query: 187 VVKAGGGTVVGQVRAPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFGVNK 246 VVKA GGTV G VR PL+ SDFSSFLLQAQ+SKAQILGLA AGGD +NAIKAANEFGVNK Sbjct: 196 VVKANGGTVSGSVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTVNAIKAANEFGVNK 255 Query: 247 TMKLAGLLIFITDTHSLGLQVTQGMYLTDGWYWDMNDQARAWGNRYFGKMKKMPTMFQAG 306 TMKLAGLL+FI D HSL ++TQGMYLTD WYWD ND++R W RYF KMKKMP+ QA Sbjct: 256 TMKLAGLLMFINDVHSLTPKLTQGMYLTDSWYWDQNDESRKWSRRYFEKMKKMPSSLQAA 315 Query: 307 DASAVGQYLKAVKAVGSTDADKVMDYLRKNKINDFFTSNGVVRPDGRMVHDMYLMEVKKP 366 D SA YL AVKA GS D DKVM +RK KIND + NG++R DG M+HDMYLM+VK P Sbjct: 316 DYSATLTYLNAVKATGSDDTDKVMAQMRKTKINDMYAKNGMIRDDGSMIHDMYLMQVKSP 375 Query: 367 SESKRPWDYYKLVQTIPGDQAYMTKAESKCSLWK 400 +ESK PWDYYK++QTIPG+QA+ TKAE+KC+ WK Sbjct: 376 TESKYPWDYYKVIQTIPGEQAFTTKAETKCASWK 409 >ref|YP_443821.1| branched-chain amino acid ABC transporter periplasmic branched-chain amino acid-binding protein [Burkholderia thailandensis E264] ref|ZP_02375728.1| branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein [Burkholderia thailandensis TXDOH] ref|ZP_02389626.1| branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein [Burkholderia thailandensis Bt4] gb|ABC36839.1| branched-chain amino acid ABC transporter, periplasmic branched-chain amino acid-binding protein [Burkholderia thailandensis E264] Length = 398 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 267/398 (67%), Positives = 325/398 (81%), Gaps = 1/398 (0%) Query: 3 KFLKMAALSAAMCAAFSGNANAAGDTIKIGFITDLSGTYADMDGQGGIEAIKMAIADAGG 62 K +A + A+ AA+S A A D +KIGFITD+SG YAD+DGQGG+EAIKMA+AD GG Sbjct: 2 KLKTLAHVCLAVAAAWSVGAAQAADAVKIGFITDMSGLYADIDGQGGLEAIKMAVADFGG 61 Query: 63 TINGKKVEFVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVF 122 +NGK +E V+ADHQNKADIAA+KAREW DR G+D+LVGG NSA +L+M +VA EKKKV+ Sbjct: 62 KVNGKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGGTNSATALSMNQVAAEKKKVY 121 Query: 123 ISVGAGTTRQTNEECNAYTVQYAYDTTALARGTGAAITKQGGKSWYFVTADYAFGTSLEK 182 I++GAG TNE+C YTV YAYDT ALA+GTG+A+ KQGGK+W+F+TADYAFG +LEK Sbjct: 122 INIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 181 Query: 183 DTSDVVKAGGGTVVGQVRAPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEF 242 +T+DVVKA GG V+G+VR PL+ SDFSSFLLQAQSSKAQILGLA AGGD +NAIKAA EF Sbjct: 182 NTADVVKANGGKVLGEVRHPLSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEF 241 Query: 243 GVNKTMKLAGLLIFITDTHSLGLQVTQGMYLTDGWYWDMNDQARAWGNRYFGKMKKMPTM 302 G+ KTMKLA LL+FI D H+LGL+ TQG+ LTD WYW+ + +R W RYF KMKKMP+ Sbjct: 242 GITKTMKLAALLMFIDDVHALGLETTQGLVLTDSWYWNRDPASRQWAQRYFAKMKKMPSS 301 Query: 303 FQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNKINDFFTSNGVVRPDGRMVHDMYLME 362 QA D SAV YLKAV+AVGSTD+DKVM L+K KI+DF+ + G +R DG M+HDMYLME Sbjct: 302 LQAADYSAVMTYLKAVQAVGSTDSDKVMAQLKKMKIDDFY-AKGYIRADGSMIHDMYLME 360 Query: 363 VKKPSESKRPWDYYKLVQTIPGDQAYMTKAESKCSLWK 400 VKKPSESK PWDYYK+V TIPG+QA+ TK E++C+LWK Sbjct: 361 VKKPSESKEPWDYYKVVATIPGEQAFTTKQETRCALWK 398 >ref|YP_560960.1| branched chain amino acid ABC transporter periplasmic ligand-binding protein [Burkholderia xenovorans LB400] gb|ABE32908.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia xenovorans LB400] Length = 404 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 267/400 (66%), Positives = 322/400 (80%), Gaps = 1/400 (0%) Query: 1 LKKFLKMAALSAAMCAAFSGNANAAGDTIKIGFITDLSGTYADMDGQGGIEAIKMAIADA 60 L + + AA A G+A AA D++KIGFITD+SG YAD+DGQGG+EAI+MA+AD Sbjct: 6 LARLATLCFAVAAGAALTMGSAQAADDSVKIGFITDMSGLYADIDGQGGLEAIRMAVADF 65 Query: 61 GGTINGKKVEFVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKK 120 GG +NGK + V+ADHQNKADIAA++AREWFDRDGVDML+GG NSA L+M VAGEKKK Sbjct: 66 GGKVNGKPITVVYADHQNKADIAASRAREWFDRDGVDMLIGGTNSATGLSMNTVAGEKKK 125 Query: 121 VFISVGAGTTRQTNEECNAYTVQYAYDTTALARGTGAAITKQGGKSWYFVTADYAFGTSL 180 V+IS+GAG TNE+C YTV YAYDTTALA+GTG+A+TKQGGK+WYF+TADYAFG +L Sbjct: 126 VYISIGAGADTLTNEQCTPYTVHYAYDTTALAKGTGSAVTKQGGKTWYFLTADYAFGKAL 185 Query: 181 EKDTSDVVKAGGGTVVGQVRAPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAAN 240 EK+T+DVVKA GG V+G VR PL+ SDFSSFLLQAQ+SKAQILGLA AGGD IN+IKAA Sbjct: 186 EKNTADVVKANGGQVLGAVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINSIKAAK 245 Query: 241 EFGVNKTMKLAGLLIFITDTHSLGLQVTQGMYLTDGWYWDMNDQARAWGNRYFGKMKKMP 300 EFG+ KTMKLA LL+FI D HSLGL+ TQG+ LTD WYW+ + R W RYF KMKKMP Sbjct: 246 EFGITKTMKLAALLVFIDDIHSLGLETTQGLVLTDSWYWNKDATTRKWAERYFDKMKKMP 305 Query: 301 TMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNKINDFFTSNGVVRPDGRMVHDMYL 360 + QA D SA YL AVKAVGSTD+DKVM L+K KI+DF+ + G +R DG M+HDMYL Sbjct: 306 SSLQAADYSATMTYLNAVKAVGSTDSDKVMAQLKKTKIDDFY-AKGYIRQDGSMIHDMYL 364 Query: 361 MEVKKPSESKRPWDYYKLVQTIPGDQAYMTKAESKCSLWK 400 M+VK P+ES+ PWDYYK+ TIPG+QA+ TKAE++C+LWK Sbjct: 365 MQVKTPAESREPWDYYKITATIPGEQAFTTKAETRCALWK 404 >emb|CAQ17865.1| substrate-binding periplasmic protein (pbp) [Ralstonia solanacearum MolK2] Length = 406 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 265/386 (68%), Positives = 312/386 (80%), Gaps = 1/386 (0%) Query: 15 CAAFSGNANAAGDTIKIGFITDLSGTYADMDGQGGIEAIKMAIADAGGTINGKKVEFVFA 74 AAF +A +GD +KIG+ITDLSG YAD+DGQGG+EA+KMAI DAGG + GK +E + A Sbjct: 21 LAAFGAHAQVSGDKVKIGYITDLSGLYADIDGQGGVEAVKMAIEDAGGKVLGKPIELITA 80 Query: 75 DHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFISVGAGTTRQTN 134 DHQNKADIAA+KAREW D+ G+DML+GG NSA SLAM KVA EKK+VFI +GAGT R TN Sbjct: 81 DHQNKADIAASKAREWMDQQGIDMLLGGTNSATSLAMSKVAAEKKRVFIGIGAGTARLTN 140 Query: 135 EECNAYTVQYAYDTTALARGTGAAITKQGGKSWYFVTADYAFGTSLEKDTSDVVKAGGGT 194 EEC YT+ YAYDT ALA+GTG+A+ KQGGKSW+F+TADYAFG SLE DT+ VVKA GGT Sbjct: 141 EECTPYTIHYAYDTVALAKGTGSAVVKQGGKSWFFLTADYAFGHSLENDTAAVVKANGGT 200 Query: 195 VVGQVRAPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFGVNKTMKLAGLL 254 VVG V+ PL+ SDFSS+LLQAQ+SKAQILGLA AGGD INAIKAA EFG+ KTMK+AGLL Sbjct: 201 VVGSVKHPLSASDFSSYLLQAQASKAQILGLANAGGDTINAIKAAKEFGITKTMKIAGLL 260 Query: 255 IFITDTHSLGLQVTQGMYLTDGWYWDMNDQARAWGNRYFGKMKKMPTMFQAGDASAVGQY 314 +FI D HSLGLQ +G+ +TD WYWDMNDQ R + RYF KMKKMP+ QA D SAV Y Sbjct: 261 MFINDVHSLGLQTAEGLLMTDSWYWDMNDQTRKFATRYFAKMKKMPSSLQAADYSAVSNY 320 Query: 315 LKAVKAVGSTDADKVMDYLRKNKINDFFTSNGVVRPDGRMVHDMYLMEVKKPSESKRPWD 374 +KAV A G+ D DKV+ L+K ++NDFF S G +R DGR VHDMYLM+VK P+ESK+PWD Sbjct: 321 IKAVAAAGTDDPDKVIAQLKKTQLNDFF-SKGTIRADGRYVHDMYLMQVKTPAESKKPWD 379 Query: 375 YYKLVQTIPGDQAYMTKAESKCSLWK 400 Y K+V TIPGDQA+ T AESKC L K Sbjct: 380 YMKIVATIPGDQAFTTPAESKCPLLK 405