BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0276.p (241 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773586.1| GTP-binding protein [Herbaspirillum seropedi... 417 e-114 ref|YP_004751096.1| putative GTPase [Collimonas fungivorans Ter3... 414 e-114 ref|YP_001355067.1| ribosome biogenesis GTP-binding protein YsxC... 414 e-114 ref|YP_001101365.1| ribosome biogenesis GTP-binding protein YsxC... 413 e-113 ref|ZP_04580024.1| GTP-binding protein EngB [Oxalobacter formige... 338 3e-91 >ref|YP_003773586.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ61678.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] Length = 246 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/219 (88%), Positives = 207/219 (94%) Query: 1 MSQLWQARFFTTVNHLRDLPNTKVPEIAFAGRSNAGKSTAINVLCNQKKLAFASKTPGRT 60 MSQLWQARFFTTVNHLRDLP T VPEIAFAGRSNAGKS+AINVLCNQK+LAFASKTPGRT Sbjct: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 Query: 61 QHINYFSIGGAHVAQHRKDETKVDEIRALLVDLPGYGYAQVSGSAKLHWQELLGDYVRRR 120 QHINYFSIGGAHV QHR DE + DEIRA+LVDLPGYGYA+VSGSAK HWQ LLGDYVR+R Sbjct: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 Query: 121 DQLAALVMIVDSRRPFTDLDIQMVEWFAPTGKPLHCILSKADKLNRNDATNALRQAHTFL 180 +QLAALVMIVDSRRPFTDLDIQM+EWFAPTGKP+HCILSKADKLNRN++TNALRQA T+L Sbjct: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 Query: 181 SSYVDAKGEPFPFTAQLFSALKRTGLEEANDKILELAGL 219 SYVD KG+PFPFTAQLFSALKR GLEEANDKILELAGL Sbjct: 181 QSYVDEKGQPFPFTAQLFSALKRIGLEEANDKILELAGL 219 >ref|YP_004751096.1| putative GTPase [Collimonas fungivorans Ter331] gb|AEK60273.1| putative GTPase with nucleoside triP hydrolase domain, involved in coordination of cell cycle [Collimonas fungivorans Ter331] Length = 329 Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust. Identities = 200/240 (83%), Positives = 217/240 (90%), Gaps = 2/240 (0%) Query: 1 MSQLWQARFFTTVNHLRDLPNTKVPEIAFAGRSNAGKSTAINVLCNQKKLAFASKTPGRT 60 MS LWQARFFTTVNHLRDLP +VPEIAFAGRSNAGKSTAIN+LCNQKKLAFASKTPGRT Sbjct: 91 MSLLWQARFFTTVNHLRDLPTLQVPEIAFAGRSNAGKSTAINLLCNQKKLAFASKTPGRT 150 Query: 61 QHINYFSIGGAHVAQHRKDETKVDEIRALLVDLPGYGYAQVSGSAKLHWQELLGDYVRRR 120 QHINYFSIGGAHVAQHRKDETK+DEIRALLVDLPGYGYA+VSGSAKLHWQ+LLGDYVRRR Sbjct: 151 QHINYFSIGGAHVAQHRKDETKIDEIRALLVDLPGYGYAEVSGSAKLHWQQLLGDYVRRR 210 Query: 121 DQLAALVMIVDSRRPFTDLDIQMVEWFAPTGKPLHCILSKADKLNRNDATNALRQAHTFL 180 QLAALV+IVDSRRPFT+LD+QMVEWFAPTGKP+HCILSK+DKLNRNDATNALRQA TFL Sbjct: 211 QQLAALVLIVDSRRPFTELDVQMVEWFAPTGKPIHCILSKSDKLNRNDATNALRQARTFL 270 Query: 181 SSYVDAKGEPFPFTAQLFSALKRTGLEEANDKILELAGLSNDEDTEWDASNAPDDIGNEE 240 +SYVD + PFTAQLFSAL R+GLEEAND+ILELAGL++ DA+ A G EE Sbjct: 271 ASYVDENNQQLPFTAQLFSALNRSGLEEANDRILELAGLTDAAGDMPDATAA--GAGEEE 328 >ref|YP_001355067.1| ribosome biogenesis GTP-binding protein YsxC [Janthinobacterium sp. Marseille] sp|A6T3H0.1|ENGB_JANMA RecName: Full=Probable GTP-binding protein EngB gb|ABR89835.1| GTP-binding protein EngB [Janthinobacterium sp. Marseille] Length = 235 Score = 414 bits (1063), Expect = e-114, Method: Compositional matrix adjust. Identities = 195/233 (83%), Positives = 213/233 (91%), Gaps = 3/233 (1%) Query: 1 MSQLWQARFFTTVNHLRDLPNTKVPEIAFAGRSNAGKSTAINVLCNQKKLAFASKTPGRT 60 MS LWQARFFTTVNHLRDLP T+VPEIAFAGRSNAGKSTAIN+LCNQKKLAFASKTPGRT Sbjct: 1 MSLLWQARFFTTVNHLRDLPKTQVPEIAFAGRSNAGKSTAINILCNQKKLAFASKTPGRT 60 Query: 61 QHINYFSIGGAHVAQHRKDETKVDEIRALLVDLPGYGYAQVSGSAKLHWQELLGDYVRRR 120 QHINYFSIGGAHV QHRKDETKVDEIRALLVDLPGYGYA+VSGSAKLHWQELLGDYV+RR Sbjct: 61 QHINYFSIGGAHVGQHRKDETKVDEIRALLVDLPGYGYAEVSGSAKLHWQELLGDYVQRR 120 Query: 121 DQLAALVMIVDSRRPFTDLDIQMVEWFAPTGKPLHCILSKADKLNRNDATNALRQAHTFL 180 +QLAALV+IVDSRRPFT+LDIQM+EWFAPTGKP+HC+L+K+DKLNRNDA NALR A T L Sbjct: 121 EQLAALVLIVDSRRPFTELDIQMLEWFAPTGKPIHCLLTKSDKLNRNDAANALRTARTIL 180 Query: 181 SSYVDAKGEPFPFTAQLFSALKRTGLEEANDKILELAGLSNDEDTEWDASNAP 233 SYVD G+PFPFTAQ+FSALKR+GL+EANDKI+EL GL+ E SN P Sbjct: 181 GSYVDENGQPFPFTAQMFSALKRSGLDEANDKIIELLGLNEAPQEE---SNGP 230 >ref|YP_001101365.1| ribosome biogenesis GTP-binding protein YsxC [Herminiimonas arsenicoxydans] sp|A4G9Q7.1|ENGB_HERAR RecName: Full=Probable GTP-binding protein EngB emb|CAL63244.1| Putative GTP-binding protein [Herminiimonas arsenicoxydans] Length = 239 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 193/234 (82%), Positives = 216/234 (92%) Query: 1 MSQLWQARFFTTVNHLRDLPNTKVPEIAFAGRSNAGKSTAINVLCNQKKLAFASKTPGRT 60 MS LWQARFFTTVNHLRDLPNT+VPEIAFAGRSNAGKSTAIN+L NQKKL FASKTPGRT Sbjct: 1 MSLLWQARFFTTVNHLRDLPNTQVPEIAFAGRSNAGKSTAINILSNQKKLCFASKTPGRT 60 Query: 61 QHINYFSIGGAHVAQHRKDETKVDEIRALLVDLPGYGYAQVSGSAKLHWQELLGDYVRRR 120 QHINYFSIGGAHV QHRKDETKV+EIRA+LVDLPGYGYA+VSGSAK HWQ LLGDYV+RR Sbjct: 61 QHINYFSIGGAHVGQHRKDETKVEEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVQRR 120 Query: 121 DQLAALVMIVDSRRPFTDLDIQMVEWFAPTGKPLHCILSKADKLNRNDATNALRQAHTFL 180 +QLAALV+IVDSRRPFTDLDIQM+EWFAPTGKP+HCIL+K+DKLNRN++TNALR A+T L Sbjct: 121 EQLAALVLIVDSRRPFTDLDIQMLEWFAPTGKPIHCILTKSDKLNRNESTNALRTANTLL 180 Query: 181 SSYVDAKGEPFPFTAQLFSALKRTGLEEANDKILELAGLSNDEDTEWDASNAPD 234 +SYVD G+PFPFTAQLFSALKRTG++EANDKILEL GL+++ E D+ A D Sbjct: 181 ASYVDEYGQPFPFTAQLFSALKRTGIDEANDKILELLGLNDEVSEESDSKTAGD 234 >ref|ZP_04580024.1| GTP-binding protein EngB [Oxalobacter formigenes OXCC13] gb|EEO30997.1| GTP-binding protein EngB [Oxalobacter formigenes OXCC13] Length = 231 Score = 338 bits (868), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 155/225 (68%), Positives = 184/225 (81%) Query: 1 MSQLWQARFFTTVNHLRDLPNTKVPEIAFAGRSNAGKSTAINVLCNQKKLAFASKTPGRT 60 MS+LWQARF+ TVNHLRDLP VPE+AF GRSNAGKS+AIN LCNQK LAFASKTPGRT Sbjct: 1 MSKLWQARFYKTVNHLRDLPKLDVPEVAFVGRSNAGKSSAINTLCNQKSLAFASKTPGRT 60 Query: 61 QHINYFSIGGAHVAQHRKDETKVDEIRALLVDLPGYGYAQVSGSAKLHWQELLGDYVRRR 120 QHIN+FSIGGAHV QHR D + EI LVDLPGYG+AQVSGSAK HWQ+LL DY+ R Sbjct: 61 QHINFFSIGGAHVGQHRHDPVRESEIDMFLVDLPGYGFAQVSGSAKEHWQKLLSDYLIHR 120 Query: 121 DQLAALVMIVDSRRPFTDLDIQMVEWFAPTGKPLHCILSKADKLNRNDATNALRQAHTFL 180 QL LV+++D+R PF LD+Q++EWFA TGKP+HC+L+KADKLNR+++TNAL+Q T L Sbjct: 121 QQLTGLVLVMDARHPFQPLDVQLLEWFAVTGKPVHCLLTKADKLNRSESTNALKQVDTIL 180 Query: 181 SSYVDAKGEPFPFTAQLFSALKRTGLEEANDKILELAGLSNDEDT 225 SYVD +G PFPFTAQLFS+ KR G++EA D IL+LAG + DT Sbjct: 181 KSYVDEEGNPFPFTAQLFSSTKRIGIKEATDTILQLAGGNEPPDT 225