BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0241.p (227 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752504.1| LysR family transcriptional regulator [Colli... 329 2e-88 ref|YP_003774414.1| LysR family transcription regulator protein ... 316 1e-84 ref|ZP_06689244.1| LysR family transcriptional regulator [Achrom... 304 6e-81 gb|EFV86049.1| transcriptional regulator [Achromobacter xylosoxi... 303 1e-80 gb|EGP48041.1| LysR family regulatory helix-turn-helix protein 1... 293 2e-77 >ref|YP_004752504.1| LysR family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK61681.1| transcriptional regulator, LysR family [Collimonas fungivorans Ter331] Length = 288 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 161/218 (73%), Positives = 187/218 (85%) Query: 1 VSAVEKMETAADQLQRQMQGIDERLCGVVRIAATDTMAKHVLIPAMQQLAADHPAIRVVL 60 +A E+ME AADQLQRQMQGID+RLCGVVR+A TDTM KH L+ AMQ+L A HP IRVVL Sbjct: 65 FAAAERMEHAADQLQRQMQGIDDRLCGVVRLATTDTMGKHFLMVAMQRLHAVHPDIRVVL 124 Query: 61 TTSTQVSNLTRREADLAVRSLRPTSPDLISRHLKRLALGLYASRSYIKKHGLPQPGTALA 120 +TSTQVSNLTRREADLAVR++RP+SPDLISRHL R +GLYA++SY+K G P P TALA Sbjct: 125 STSTQVSNLTRREADLAVRTIRPSSPDLISRHLTRREVGLYAAKSYLKLRGEPLPDTALA 184 Query: 121 GHDVVIYQRAIYASQIDTICGESTANARVAMEVSSGLMLLEAVAAGLGIGELPTYMADTV 180 GHD+VIYQR+I SQ +CGE+ NARVAMEV+SGLM++EAV AGLGIGELPT+MAD+ Sbjct: 185 GHDLVIYQRSISPSQGVALCGEAVGNARVAMEVNSGLMMIEAVRAGLGIGELPTHMADSD 244 Query: 181 PQLVRLWPERAEPYDMWLVLHSDLNRTARVRAVADAIV 218 P L R+WP+RAE YD+WLVLH DLNRTARVRAVADAIV Sbjct: 245 PLLARIWPQRAEAYDIWLVLHGDLNRTARVRAVADAIV 282 >ref|YP_003774414.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62506.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 288 Score = 316 bits (810), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 145/211 (68%), Positives = 180/211 (85%) Query: 12 DQLQRQMQGIDERLCGVVRIAATDTMAKHVLIPAMQQLAADHPAIRVVLTTSTQVSNLTR 71 +QLQRQMQGIDERLCGVVR+AATD A+H LIPA+ +L +HP IRVVL+TSTQ++NLT+ Sbjct: 76 EQLQRQMQGIDERLCGVVRLAATDVTARHFLIPALHRLRQEHPHIRVVLSTSTQITNLTK 135 Query: 72 READLAVRSLRPTSPDLISRHLKRLALGLYASRSYIKKHGLPQPGTALAGHDVVIYQRAI 131 READ+AVR+LRP +PDLI+RHLKRL +YASRSY+KK GLP+PGT L GHDVVIYQR++ Sbjct: 136 READIAVRTLRPDAPDLIARHLKRLHTAIYASRSYVKKRGLPEPGTGLKGHDVVIYQRSV 195 Query: 132 YASQIDTICGESTANARVAMEVSSGLMLLEAVAAGLGIGELPTYMADTVPQLVRLWPERA 191 ++ + ICGES NA+VAMEVS+GL++ + + AG G+GELPT++ D LVR+WP+R Sbjct: 196 SPAKSEQICGESIINAQVAMEVSTGLVMYDCLQAGFGLGELPTHVGDKASGLVRVWPQRE 255 Query: 192 EPYDMWLVLHSDLNRTARVRAVADAIVAAYD 222 PYDMWLVLHSDLNRTARVRAVADAI+AAY+ Sbjct: 256 TPYDMWLVLHSDLNRTARVRAVADAIIAAYE 286 >ref|ZP_06689244.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] gb|EFF73881.1| LysR family transcriptional regulator [Achromobacter piechaudii ATCC 43553] Length = 289 Score = 304 bits (779), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 141/222 (63%), Positives = 179/222 (80%) Query: 1 VSAVEKMETAADQLQRQMQGIDERLCGVVRIAATDTMAKHVLIPAMQQLAADHPAIRVVL 60 +A E+ME AADQLQRQMQG+D RL GVVR+AA++T+A + ++ A++++ A HP IRVVL Sbjct: 65 FAAAERMEQAADQLQRQMQGLDHRLSGVVRVAASETVASYFVMEAVRRVQAQHPDIRVVL 124 Query: 61 TTSTQVSNLTRREADLAVRSLRPTSPDLISRHLKRLALGLYASRSYIKKHGLPQPGTALA 120 + S Q+SNLTRREADLA+R+L+P +PDLI RHL R +GLYASR Y+ HG P+PGTA A Sbjct: 125 SASIQISNLTRREADLAIRNLKPDNPDLIQRHLARKEVGLYASRGYLAAHGEPRPGTAFA 184 Query: 121 GHDVVIYQRAIYASQIDTICGESTANARVAMEVSSGLMLLEAVAAGLGIGELPTYMADTV 180 GH +V YQ+A+ DT CGE T N R+A+E++SG+M+L AVAAGLGIGELPT+MA Sbjct: 185 GHTLVTYQQAVLPGWSDTFCGEPTGNGRIAIELNSGMMILAAVAAGLGIGELPTHMAPDY 244 Query: 181 PQLVRLWPERAEPYDMWLVLHSDLNRTARVRAVADAIVAAYD 222 P LVR+WP RAEPYD+WLV+H DLNRTARVRAVADAIV ++ Sbjct: 245 PDLVRIWPGRAEPYDLWLVMHGDLNRTARVRAVADAIVEVFE 286 >gb|EFV86049.1| transcriptional regulator [Achromobacter xylosoxidans C54] Length = 288 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 139/218 (63%), Positives = 176/218 (80%) Query: 5 EKMETAADQLQRQMQGIDERLCGVVRIAATDTMAKHVLIPAMQQLAADHPAIRVVLTTST 64 E+ME AADQLQRQMQG+D RL GVVR+A ++T+A + ++ A+ +L HP IRV L+TS Sbjct: 69 ERMEQAADQLQRQMQGLDHRLSGVVRVATSETVASYFIMEAISRLHVQHPDIRVALSTSI 128 Query: 65 QVSNLTRREADLAVRSLRPTSPDLISRHLKRLALGLYASRSYIKKHGLPQPGTALAGHDV 124 Q+SNLTRREADLA+R+++P +PDLI RHL R +GLYASRSY++ HG P+PGTA AGH + Sbjct: 129 QLSNLTRREADLAIRNIKPDNPDLIQRHLARKEVGLYASRSYLEAHGEPRPGTAFAGHTL 188 Query: 125 VIYQRAIYASQIDTICGESTANARVAMEVSSGLMLLEAVAAGLGIGELPTYMADTVPQLV 184 V YQ+A+ DT CGE T N R+AME++SGLM++EAVAAGLGIGELP +MA P LV Sbjct: 189 VTYQQAVLPGWSDTFCGEPTGNGRIAMELNSGLMIIEAVAAGLGIGELPIHMAPQYPDLV 248 Query: 185 RLWPERAEPYDMWLVLHSDLNRTARVRAVADAIVAAYD 222 R+WP R+EPYD+WLV+H DLNRTARVRAVADAIV ++ Sbjct: 249 RIWPHRSEPYDLWLVMHGDLNRTARVRAVADAIVEVFE 286 >gb|EGP48041.1| LysR family regulatory helix-turn-helix protein 158 [Achromobacter xylosoxidans AXX-A] Length = 288 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 135/218 (61%), Positives = 173/218 (79%) Query: 5 EKMETAADQLQRQMQGIDERLCGVVRIAATDTMAKHVLIPAMQQLAADHPAIRVVLTTST 64 E+ME AADQLQRQMQG+D RL GVVR+A ++T+A H ++ A+++L HP IR+ L+TS Sbjct: 69 ERMEQAADQLQRQMQGLDHRLSGVVRVATSETVASHFIMEAVRRLHLQHPDIRIALSTSI 128 Query: 65 QVSNLTRREADLAVRSLRPTSPDLISRHLKRLALGLYASRSYIKKHGLPQPGTALAGHDV 124 Q+SNLTRREADLA+R+++P +PDLI RHL R +GLYAS+SYI G P+ GTA AGH + Sbjct: 129 QLSNLTRREADLAIRNVKPDNPDLIHRHLARRDVGLYASKSYIAARGEPRQGTAFAGHTL 188 Query: 125 VIYQRAIYASQIDTICGESTANARVAMEVSSGLMLLEAVAAGLGIGELPTYMADTVPQLV 184 V YQ+++ DT CGE T N +AME++SGLM++EAVAAGLGIGELP +MA P LV Sbjct: 189 VTYQQSVLPGWSDTFCGEPTGNGHIAMELNSGLMIIEAVAAGLGIGELPVHMAPQYPDLV 248 Query: 185 RLWPERAEPYDMWLVLHSDLNRTARVRAVADAIVAAYD 222 R+WP R+EPYD+WLV+H DLNRTARVRAVADAIV ++ Sbjct: 249 RIWPHRSEPYDLWLVMHGDLNRTARVRAVADAIVEVFE 286