BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0238.p (317 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774416.1| GTP-binding protein [Herbaspirillum seropedi... 527 e-148 ref|YP_004754377.1| 50S ribosomal subunit maturation GTPase [Col... 516 e-144 ref|YP_001354343.1| hypothetical protein mma_2653 [Janthinobacte... 500 e-139 gb|AAV68373.1| putative GTPase [Herminiimonas arsenicoxydans] 499 e-139 ref|ZP_08272710.1| 50S ribosomal subunit maturation GTPase RbgA ... 475 e-132 >ref|YP_003774416.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ62508.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 527 bits (1358), Expect = e-148, Method: Compositional matrix adjust. Identities = 249/288 (86%), Positives = 271/288 (94%) Query: 1 MSIQWFPGHMNAARKKAAEAMEKVDLVIEVVDARLPQASCNPMIEQIRLFRQRPCLKILN 60 MSIQWFPGHMN+AR+KAAE+MEKVD+VIEVVDARLPQASCNPMIEQ+R RQRPCLKILN Sbjct: 1 MSIQWFPGHMNSARRKAAESMEKVDMVIEVVDARLPQASCNPMIEQLRNARQRPCLKILN 60 Query: 61 KSDLADPGVTQAWIAHYNSQKNVNAVALSCKKPSDVAKVPKLALALAPHRGTPLKPLRMM 120 K+D+ADP TQAWI +YNSQK V AVALSCKKPSDVA+VPKLA+ +APHRGT LKPLRMM Sbjct: 61 KTDMADPVATQAWIDYYNSQKGVMAVALSCKKPSDVARVPKLAMQVAPHRGTALKPLRMM 120 Query: 121 IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLIDTPGMLWPKIQHPS 180 IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVL DTPGMLWPKI+HPS Sbjct: 121 IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLTDTPGMLWPKIEHPS 180 Query: 181 DGLMLAASHAIGSNALIEEEVATFLADELLKRYPHLLAARYGFKTEGMDGVAVVEGVAIK 240 DGLMLAASHA+GSNALIEEEVATFLAD LL+RYP LL ARYGF TEGMDGVAVVEGVA K Sbjct: 181 DGLMLAASHAVGSNALIEEEVATFLADLLLQRYPQLLKARYGFNTEGMDGVAVVEGVAAK 240 Query: 241 RGFRLKGGDFDFEKAAHTFLQDYRTGALGQITLETPATRAALLASYQA 288 RGFRLKGGD+DFEKAAHTFLQDYR+GALG+I+LETP +RA LLA+Y++ Sbjct: 241 RGFRLKGGDYDFEKAAHTFLQDYRSGALGRISLETPQSRAELLATYRS 288 >ref|YP_004754377.1| 50S ribosomal subunit maturation GTPase [Collimonas fungivorans Ter331] gb|AEK63554.1| 50S ribosomal subunit maturation GTPase [Collimonas fungivorans Ter331] Length = 303 Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust. Identities = 247/282 (87%), Positives = 265/282 (93%) Query: 10 MNAARKKAAEAMEKVDLVIEVVDARLPQASCNPMIEQIRLFRQRPCLKILNKSDLADPGV 69 MNAARKKAAEAMEKVDLVIEV+D RLPQASCNPMIEQ+R+FRQRPCLKILNKSDLADP V Sbjct: 1 MNAARKKAAEAMEKVDLVIEVLDGRLPQASCNPMIEQLRVFRQRPCLKILNKSDLADPAV 60 Query: 70 TQAWIAHYNSQKNVNAVALSCKKPSDVAKVPKLALALAPHRGTPLKPLRMMIMGIPNVGK 129 TQAWIA+YNSQKNV+AVALSCKKPSDVAK+P L L LAPHRGTPLKPLRMMIMGIPNVGK Sbjct: 61 TQAWIAYYNSQKNVHAVALSCKKPSDVAKIPGLCLTLAPHRGTPLKPLRMMIMGIPNVGK 120 Query: 130 STLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLIDTPGMLWPKIQHPSDGLMLAASH 189 STLMNALLK+RVAAVGDEPAVTK QQRLYLGNNMVLIDTPGMLWPKI HPSDGLMLAASH Sbjct: 121 STLMNALLKRRVAAVGDEPAVTKVQQRLYLGNNMVLIDTPGMLWPKIAHPSDGLMLAASH 180 Query: 190 AIGSNALIEEEVATFLADELLKRYPHLLAARYGFKTEGMDGVAVVEGVAIKRGFRLKGGD 249 AIG+NALIEEEVATFLADELL RY LLAARYG KT+G+DGV+V+EGVA++RGFRLKGGD Sbjct: 181 AIGTNALIEEEVATFLADELLIRYAPLLAARYGIKTDGIDGVSVIEGVAVRRGFRLKGGD 240 Query: 250 FDFEKAAHTFLQDYRTGALGQITLETPATRAALLASYQAELA 291 D EKAAHT LQDYRTGALG+I+LETP TRAALLA +Q E+A Sbjct: 241 LDLEKAAHTLLQDYRTGALGRISLETPQTRAALLARHQEEIA 282 >ref|YP_001354343.1| hypothetical protein mma_2653 [Janthinobacterium sp. Marseille] gb|ABR89802.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 315 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 238/313 (76%), Positives = 272/313 (86%), Gaps = 6/313 (1%) Query: 1 MSIQWFPGHMNAARKKAAEAMEKVDLVIEVVDARLPQASCNPMIEQIRLFRQRPCLKILN 60 MSIQW+PGHMNAARKKAAEAMEK D++IEV+DAR+PQAS NPMIE++R FRQRPCLKILN Sbjct: 1 MSIQWYPGHMNAARKKAAEAMEKTDMIIEVLDARVPQASRNPMIEELRTFRQRPCLKILN 60 Query: 61 KSDLADPGVTQAWIAHYNSQKNVNAVALSCKKPSDVAKVPKLALALAPHRGTPLKPLRMM 120 KSDLADP TQ W+ YNSQK V+AVALSCKKPSDVAK+P L L +APHRGT LKPLR+M Sbjct: 61 KSDLADPAATQKWLDLYNSQKGVHAVALSCKKPSDVAKIPGLCLKIAPHRGTALKPLRIM 120 Query: 121 IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLIDTPGMLWPKIQHPS 180 IMGIPNVGKSTLMNALLKKRVA VGDEPAVTK QQRLYLGNNMVL DTPGM+WPKI+HPS Sbjct: 121 IMGIPNVGKSTLMNALLKKRVAKVGDEPAVTKMQQRLYLGNNMVLTDTPGMMWPKIEHPS 180 Query: 181 DGLMLAASHAIGSNALIEEEVATFLADELLKRYPHLLAARYGFKTEGMDGVAVVEGVAIK 240 DGLMLAASHAIGSNALIEEEVATFLAD +L YP LL ARYGF TEG+DGV+V+EGVA++ Sbjct: 181 DGLMLAASHAIGSNALIEEEVATFLADIVLMHYPQLLTARYGFPTEGIDGVSVIEGVALR 240 Query: 241 RGFRLKGGDFDFEKAAHTFLQDYRTGALGQITLETPATRAALLASYQAELAIAAAEEAAE 300 RGFR+KGG+ D EKAAHTFLQDYR GALG+++LETP +R ALLAS+Q ++ ++ Sbjct: 241 RGFRIKGGELDLEKAAHTFLQDYRVGALGRVSLETPESRIALLASFQPPPSL------SD 294 Query: 301 LAAIAAEEAEKNR 313 +A EE E++R Sbjct: 295 VANDDDEETEESR 307 >gb|AAV68373.1| putative GTPase [Herminiimonas arsenicoxydans] Length = 316 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 234/305 (76%), Positives = 270/305 (88%), Gaps = 5/305 (1%) Query: 1 MSIQWFPGHMNAARKKAAEAMEKVDLVIEVVDARLPQASCNPMIEQIRLFRQRPCLKILN 60 MSIQW+PGHMNAARKKAAEAMEKVD++IEV+DAR+PQASCNPMIE++R FRQRPCLKILN Sbjct: 1 MSIQWYPGHMNAARKKAAEAMEKVDMIIEVLDARVPQASCNPMIEELRTFRQRPCLKILN 60 Query: 61 KSDLADPGVTQAWIAHYNSQKNVNAVALSCKKPSDVAKVPKLALALAPHRGTPLKPLRMM 120 KSDLADP TQ W+ YN QKNV+AVALSCKKPSDVAK+P L++ +APHRGT LKPLR+M Sbjct: 61 KSDLADPAATQQWLDFYNKQKNVHAVALSCKKPSDVAKIPALSMKIAPHRGTALKPLRIM 120 Query: 121 IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLIDTPGMLWPKIQHPS 180 IMGIPNVGKSTLMNALLKKRVA VGDEPAVTK QQRLYLGNN+VL DTPGM+WPKI +PS Sbjct: 121 IMGIPNVGKSTLMNALLKKRVAKVGDEPAVTKMQQRLYLGNNIVLTDTPGMMWPKIAYPS 180 Query: 181 DGLMLAASHAIGSNALIEEEVATFLADELLKRYPHLLAARYGFKTEGMDGVAVVEGVAIK 240 DGLMLAASHAIGSNALIEEEVATFLAD +L RYP L+AARYG KTEG+DGV+V+EGVA++ Sbjct: 181 DGLMLAASHAIGSNALIEEEVATFLADIILARYPALVAARYGMKTEGIDGVSVIEGVAVR 240 Query: 241 RGFRLKGGDFDFEKAAHTFLQDYRTGALGQITLETPATRAALLASYQ-----AELAIAAA 295 RG R+KGG+ D EKAAH FLQDYRTG LG+I+LETP +R LL ++Q +++A +A Sbjct: 241 RGLRIKGGELDLEKAAHIFLQDYRTGLLGRISLETPESRVELLTTFQPPPSLSDVADESA 300 Query: 296 EEAAE 300 E+A E Sbjct: 301 EDAPE 305 >ref|ZP_08272710.1| 50S ribosomal subunit maturation GTPase RbgA [Oxalobacteraceae bacterium IMCC9480] gb|EGF33824.1| 50S ribosomal subunit maturation GTPase RbgA [Oxalobacteraceae bacterium IMCC9480] Length = 301 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 228/277 (82%), Positives = 246/277 (88%) Query: 10 MNAARKKAAEAMEKVDLVIEVVDARLPQASCNPMIEQIRLFRQRPCLKILNKSDLADPGV 69 MNAARKKAAEAMEKVD+VIEV+DARLPQASCNPMIE +R RQRPCLKILNKSD+ADP Sbjct: 1 MNAARKKAAEAMEKVDMVIEVLDARLPQASCNPMIETLRADRQRPCLKILNKSDIADPAA 60 Query: 70 TQAWIAHYNSQKNVNAVALSCKKPSDVAKVPKLALALAPHRGTPLKPLRMMIMGIPNVGK 129 T AWIA+YN Q +V+AVALSCK PSDVAK+P L L +APHRGTPLKPLR+MIMGIPNVGK Sbjct: 61 TAAWIAYYNRQPDVHAVALSCKLPSDVAKIPALCLKIAPHRGTPLKPLRIMIMGIPNVGK 120 Query: 130 STLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLIDTPGMLWPKIQHPSDGLMLAASH 189 STLMNALLKKRVA VGDEPAVTK QQRLYLGNNMVL DTPGMLWPKIQHPSDGLMLAASH Sbjct: 121 STLMNALLKKRVAKVGDEPAVTKMQQRLYLGNNMVLTDTPGMLWPKIQHPSDGLMLAASH 180 Query: 190 AIGSNALIEEEVATFLADELLKRYPHLLAARYGFKTEGMDGVAVVEGVAIKRGFRLKGGD 249 AIGSNALIEEEVATFL D LL RYP +LAARYG K EGMDGV +VE VA++RGF+LKG Sbjct: 181 AIGSNALIEEEVATFLGDALLVRYPEMLAARYGVKPEGMDGVGIVEAVALRRGFKLKGKG 240 Query: 250 FDFEKAAHTFLQDYRTGALGQITLETPATRAALLASY 286 D EKAAHT LQDYR+GALG+I+LETP TRA LLA Y Sbjct: 241 VDLEKAAHTLLQDYRSGALGRISLETPETRAVLLAEY 277