BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0227.p (230 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774453.1| transcriptional regulator [Bradyrhizobium japon... 152 4e-35 ref|ZP_02189568.1| transcriptional regulatory protein [alpha pro... 146 2e-33 ref|YP_001045511.1| GntR family transcriptional regulator [Rhodo... 137 1e-30 ref|ZP_01892070.1| transcriptional regulator, GntR family protei... 137 1e-30 ref|YP_001409451.1| GntR family transcriptional regulator [Xanth... 137 2e-30 >ref|NP_774453.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC53078.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 225 Score = 152 bits (384), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 97/216 (44%), Positives = 136/216 (62%), Gaps = 10/216 (4%) Query: 12 IEKVYDRLLEAITSGDLKPGERVRQSALADRLGVSRQPISHALQLLRYQGLVRDAGKQGV 71 I++VY R+LEAI+ L+PG+R+RQ+ LAD+LGVSRQP+SHAL LL QGLV ++G++G Sbjct: 11 IDQVYGRILEAISDRTLQPGQRIRQNELADKLGVSRQPVSHALHLLHRQGLVAESGRRGF 70 Query: 72 EVSPVNPDYIVHLYHARVSLESSAAAMAAQRVKDGLAPKDDIDALKETIELGVSAMR--- 128 EV+ ++P I LY R ++++ AA +AA R A + +E+ ++A R Sbjct: 71 EVTQLDPARIRQLYEVRGAIDALAARLAAMRAASDAAG-------RARLEVALAAGRRID 123 Query: 129 HNAPLSVLVKADFRFHMAIYRLSGNPAIEQIMAGQWPHLMRSMMAVLNDPGVPVRAWEEH 188 PL+ L+ D FH AIY+L+GNP IE+ +A QWPH+ RSM VL++ AW EH Sbjct: 124 RKTPLAELIVLDVDFHRAIYQLAGNPVIEETIAPQWPHMRRSMATVLSELDYRDSAWAEH 183 Query: 189 QIIATHIFAGVVDEAFQAAARHIERAGRDLAKRLSA 224 IA HI AG A +AA H + AGR +RL A Sbjct: 184 ADIAAHILAGDAKAAERAALAHAQTAGRMTEERLRA 219 >ref|ZP_02189568.1| transcriptional regulatory protein [alpha proteobacterium BAL199] gb|EDP63734.1| transcriptional regulatory protein [alpha proteobacterium BAL199] Length = 230 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 122/219 (55%), Gaps = 3/219 (1%) Query: 4 SIDQNTLYIEKVYDRLLEAITSGDLKPGERVRQSALADRLGVSRQPISHALQLLRYQGLV 63 +++ + I++VY+RL++AI+ G L PG+R+RQ LA LGVSRQP+SHAL +L+ GL Sbjct: 5 TLESRPVLIDQVYERLVDAISIGSLPPGQRLRQEKLAADLGVSRQPVSHALAMLKSSGLA 64 Query: 64 RDAGKQGVEVSPVNPDYIVHLYHARVSLESSAAAMAAQRVKDGLAPKDDIDALKETIELG 123 + G +G+ V+P++P + HLY R +E +A +AAQRV P ++ AL E + G Sbjct: 65 VEQGVRGLVVAPIDPQRLYHLYEVRAVMEGLSARLAAQRVAAD--PTLEVTALSEALAKG 122 Query: 124 VSAMRHNAPLSVLVKADFRFHMAIYRLSGNPAIEQIMAGQWPHLMRSMMAVLNDPGVPVR 183 +A + V D FH AI LSGNP + ++ Q P + R M V D + R Sbjct: 123 AAA-EQVGDIPAAVDWDLAFHSAINVLSGNPVLTEVSDSQRPQIRRVMAVVKTDRSLATR 181 Query: 184 AWEEHQIIATHIFAGVVDEAFQAAARHIERAGRDLAKRL 222 W EH IA I G A A H RAG + +RL Sbjct: 182 IWLEHTAIADAIRVGDAATAETLAREHAARAGEETRRRL 220 >ref|YP_001045511.1| GntR family transcriptional regulator [Rhodobacter sphaeroides ATCC 17029] ref|YP_002520039.1| Transcriptional regulator, GntR family [Rhodobacter sphaeroides KD131] gb|ABN78739.1| transcriptional regulator, GntR family [Rhodobacter sphaeroides ATCC 17029] gb|ACM02966.1| Transcriptional regulator, GntR family [Rhodobacter sphaeroides KD131] Length = 216 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/203 (38%), Positives = 114/203 (56%), Gaps = 6/203 (2%) Query: 12 IEKVYDRLLEAITSGDLKPGERVRQSALADRLGVSRQPISHALQLLRYQGLVRDAGKQGV 71 +E+ YD LLEAI +GD+K G+R+ Q LA RL VSRQPI+ A+ +L+ Q V+D GK+GV Sbjct: 11 VEQAYDALLEAICTGDIKAGDRLNQDELALRLNVSRQPINSAIAMLKAQRFVQDTGKRGV 70 Query: 72 EVSPVNPDYIVHLYHARVSLESSAAAMAAQRVKDGLAPKDDIDALKETIELGVSAMRHNA 131 V+P++ + +Y R ++E A +A R+ + + I ++ I G S ++ Sbjct: 71 IVAPIDQNLFDSIYQFRTAIEPLAVELAVTRMTN-----EAITIGRDIIARGKSCVQSGD 125 Query: 132 PLSVLVKADFRFHMAIYRLSGNPAIEQIMAGQWPHLMRSMMAVLNDPGVPVRAWEEHQII 191 + L +AD FH IYRLSGN I M W HL R+M VL+ PG +R W+EH I Sbjct: 126 HAAAL-RADMDFHGLIYRLSGNLIIADTMTLNWRHLQRAMSEVLSVPGTTLRVWKEHDQI 184 Query: 192 ATHIFAGVVDEAFQAAARHIERA 214 + G D A H+E A Sbjct: 185 FNAMVRGDGDSAAGLMKAHMENA 207 >ref|ZP_01892070.1| transcriptional regulator, GntR family protein [Marinobacter algicola DG893] gb|EDM49449.1| transcriptional regulator, GntR family protein [Marinobacter algicola DG893] Length = 230 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/216 (38%), Positives = 115/216 (53%), Gaps = 6/216 (2%) Query: 13 EKVYDRLLEAITSGDLKPGERVRQSALADRLGVSRQPISHALQLLRYQGLVRDAGKQGVE 72 E +YD ++ AI G LKPGERV Q LA+RL VSR P+S A+Q LR G + G++G+ Sbjct: 12 ELIYDSVVNAIVEGLLKPGERVTQETLAERLDVSRLPVSQAMQRLRDDGFLSAVGRRGLM 71 Query: 73 VSPVNPDYIVHLYHARVSLESSAAAMAAQRVKDGLAPKDDIDALKETIELGVSAMRHNAP 132 VS ++ ++ LY R ++ +A +AAQRV G A K D + E G + H+ P Sbjct: 72 VSVLDESFVAQLYEFRCGIDLISAGLAAQRVDAG-ARKRGEDIIAEGFAAGKA---HDLP 127 Query: 133 LSVLVKADFRFHMAIYRLSGNPAIEQIMAGQWPHLMRSMMAVLNDPGVPVRAWEEHQIIA 192 L+ AD RFH IY L+GN I M W H+ R M +L + WEEH+ I Sbjct: 128 --ALIDADMRFHGFIYELAGNTFILDSMEAHWNHVRRVMSDILIVEKNQKQIWEEHEAIL 185 Query: 193 THIFAGVVDEAFQAAARHIERAGRDLAKRLSAGRDP 228 + AG A A H+E A + L K + R+P Sbjct: 186 NAVLAGDARTAETLAREHVETASKWLQKEIQVCREP 221 >ref|YP_001409451.1| GntR family transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS70215.1| transcriptional regulator, GntR family [Xanthobacter autotrophicus Py2] Length = 231 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 77/192 (40%), Positives = 109/192 (56%), Gaps = 16/192 (8%) Query: 12 IEKVYDRLLEAITSGDLKPGERVRQSALADRLGVSRQPISHALQLLRYQGLVRDAGKQGV 71 +E+ Y+ +L+AI G LKPGER+ Q +A RL VSRQP++HAL +LR QG V + GK+GV Sbjct: 23 VEQTYEVILDAICDGTLKPGERLTQEDIAARLNVSRQPVTHALVILRAQGFVTEVGKRGV 82 Query: 72 EVSPVNPDYIVHLYHARVSLESSAAAMAA-----QRVKDGLAPKDDIDALKETIELGVSA 126 V+PV P+ + +Y R ++E AA +A Q ++ G D L L ++ Sbjct: 83 AVAPVQPELLKAIYEFRSAVEPLAAELATANLQPQHIRHGR------DLLAHGRNLALAG 136 Query: 127 MRHNAPLSVLVKADFRFHMAIYRLSGNPAIEQIMAGQWPHLMRSMMAVLNDPGVPVRAWE 186 R +V+AD FH IY LSGNP I M W HL R M +L+ PG+ +R W Sbjct: 137 DRKG-----VVQADMDFHSFIYELSGNPLIIDTMRLNWQHLRRGMGEILSYPGLSIRVWR 191 Query: 187 EHQIIATHIFAG 198 EH+ I + +G Sbjct: 192 EHEEILEAMISG 203