BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0223.p (192 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002280004.1| TetR family transcriptional regulator [Rhizo... 168 4e-40 ref|YP_003899943.1| TetR family transcriptional regulator [Cyano... 166 2e-39 sp|Q9RAJ1.1|DHAR_MYCSX RecName: Full=HTH-type transcriptional re... 162 3e-38 gb|AEG71590.1| transcription regulator protein [Ralstonia solana... 158 3e-37 ref|YP_001833649.1| TetR family transcriptional regulator [Beije... 153 2e-35 >ref|YP_002280004.1| TetR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI53778.1| transcriptional regulator, TetR family [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 205 Score = 168 bits (425), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 89/194 (45%), Positives = 121/194 (62%), Gaps = 11/194 (5%) Query: 4 PNTRDQIFDAALKLLLERGFNASSVQDITVEAGVPKGSFYNHFESKEALAAEIVSDY-AS 62 PNTRD + +++L E G+ A+ ++DI A VPKGSFYNHFESKEA E+V Y Sbjct: 16 PNTRDNLMRVGVQMLHEAGYTATGIKDIVDAAHVPKGSFYNHFESKEAFGKEVVDFYFDG 75 Query: 63 RRSTLREILADDRLPALERLRGYFTALNQRLVDRGFQ-----HGCMIGNMTAELSEQSPV 117 LR L DD +P ++RLRGYF ++R+ RGFQ GCM+GN++ E+++ S Sbjct: 76 GLVELRARLCDDSIPPIDRLRGYF---DERI--RGFQATDYVRGCMLGNLSLEVADHSVP 130 Query: 118 IREQLLRIYGNWSTALEYAITAGQQDGSIPNQLSAKTLAGFLLNAWEGATLRVRVERSPD 177 IR++L +G WS E I Q G+I N+L A LA FLLN+WEGA LR+RVE+S + Sbjct: 131 IRDRLAAHFGTWSGLFEACIAEAQSAGAISNRLPAPLLAEFLLNSWEGALLRMRVEKSDE 190 Query: 178 AFDQFMEVVFNKVL 191 F+EV F +L Sbjct: 191 PLRAFVEVAFGSLL 204 >ref|YP_003899943.1| TetR family transcriptional regulator [Cyanothece sp. PCC 7822] gb|ADN17877.1| transcriptional regulator, TetR family [Cyanothece sp. PCC 7822] Length = 200 Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 83/190 (43%), Positives = 116/190 (61%), Gaps = 1/190 (0%) Query: 1 MSKPNTRDQIFDAALKLLLERGFNASSVQDITVEAGVPKGSFYNHFESKEALAAEIVSDY 60 M K N RD++ A L ++ GFN SVQDIT AGVPKGSFYN+FESKE AEI+ Y Sbjct: 7 MPKANVRDKLLTAGLDVIHRLGFNRCSVQDITQFAGVPKGSFYNYFESKEVFGAEILKLY 66 Query: 61 ASRRSTLREILADDRLPALERLRGYFTALNQRLVDRGFQHGCMIGNMTAELSEQSPVIRE 120 + ++ ++L+D + RL YF +L + L +Q GC++GN ELS QSP++RE Sbjct: 67 WQKAASSLKLLSDKTQSPIVRLELYFDSLAE-LTSLDYQRGCLLGNFCGELSTQSPLVRE 125 Query: 121 QLLRIYGNWSTALEYAITAGQQDGSIPNQLSAKTLAGFLLNAWEGATLRVRVERSPDAFD 180 L + W+ LE I Q G + + L A TLA FL+NAWEG LR +VE+ +F+ Sbjct: 126 LLSSLLTIWAETLENCICDAQNKGEVRSDLDATTLAHFLVNAWEGCVLRSKVEQDGRSFE 185 Query: 181 QFMEVVFNKV 190 QF ++F+ + Sbjct: 186 QFKTIIFSSI 195 >sp|Q9RAJ1.1|DHAR_MYCSX RecName: Full=HTH-type transcriptional repressor dhaR emb|CAB65288.1| inactive regulatory protein [Mycobacterium sp. GP1] Length = 198 Score = 162 bits (409), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 80/192 (41%), Positives = 119/192 (61%), Gaps = 5/192 (2%) Query: 1 MSKPNTRDQIFDAALKLLLERGFNASSVQDITVEAGVPKGSFYNHFESKEALAAEIVSDY 60 M++ R + + ++ LERG++ S+VQDIT A VPKGSFYNHFESKEA +++ ++ Sbjct: 1 MARTPVRQHLVEKGTQVFLERGYSGSAVQDITAAAEVPKGSFYNHFESKEAFGGQVLQEF 60 Query: 61 ASR-RSTLREILADDRLPALERLRGYFTALNQRLVDRGFQHGCMIGNMTAELSEQSPVIR 119 S + T+ L D +P + RL+ YF A+ + L GC+IGN + ELS S V+R Sbjct: 61 FSDLQRTISSTLEDASVPPVRRLQNYFAAIIETLDG----QGCLIGNFSVELSPLSDVVR 116 Query: 120 EQLLRIYGNWSTALEYAITAGQQDGSIPNQLSAKTLAGFLLNAWEGATLRVRVERSPDAF 179 +LLRI+ W + I GQ+ GSI L+ LA FL+ +W+GA LR+++ER+ + Sbjct: 117 TELLRIFEQWVKPFQKCIIEGQETGSIRRDLAPDLLADFLIASWQGAILRMKIERNREPL 176 Query: 180 DQFMEVVFNKVL 191 DQF+ VVF +L Sbjct: 177 DQFLTVVFEALL 188 >gb|AEG71590.1| transcription regulator protein [Ralstonia solanacearum Po82] Length = 296 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 77/190 (40%), Positives = 117/190 (61%), Gaps = 1/190 (0%) Query: 3 KPNTRDQIFDAALKLLLERGFNASSVQDITVEAGVPKGSFYNHFESKEALAAEIVSDYAS 62 +P+TRD + A +++L E G+ A+ +++I AGVPKGSFYNHFESKEA E+V Y Sbjct: 106 RPHTRDNLIHAGVRMLHEAGYAATGIKEIVDAAGVPKGSFYNHFESKEAFGKEVVDFYFG 165 Query: 63 RRST-LREILADDRLPALERLRGYFTALNQRLVDRGFQHGCMIGNMTAELSEQSPVIREQ 121 + LR ++ +P L+RLR YF ++ G+ GC++GN++ E+++ S IR+ Sbjct: 166 QGLVELRAFFENNDMPPLDRLRTYFEQRSRGFQATGYVRGCLLGNLSLEVADHSAPIRDS 225 Query: 122 LLRIYGNWSTALEYAITAGQQDGSIPNQLSAKTLAGFLLNAWEGATLRVRVERSPDAFDQ 181 L + W E I Q+ G+I N+L A LA F+LN+WEGA LR+R +RS Sbjct: 226 LATHFRTWGRLFEACIAEAQKTGAIGNRLPASVLAQFVLNSWEGALLRMRADRSDAPLKD 285 Query: 182 FMEVVFNKVL 191 F++VVF+ +L Sbjct: 286 FIDVVFSSLL 295 >ref|YP_001833649.1| TetR family transcriptional regulator [Beijerinckia indica subsp. indica ATCC 9039] gb|ACB96160.1| transcriptional regulator, TetR family [Beijerinckia indica subsp. indica ATCC 9039] Length = 190 Score = 153 bits (386), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 82/194 (42%), Positives = 114/194 (58%), Gaps = 6/194 (3%) Query: 1 MSKPNTRDQIFDAALKLLLERGFNASSVQDITVEAGVPKGSFYNHFESKEALAAEIVSDY 60 M++P+ R++I DAAL+ E+GF SVQDIT AG PKGSFYNHF++KEALA E++ Y Sbjct: 1 MARPSLREKIIDAALECFHEQGFLGCSVQDITDAAGAPKGSFYNHFKTKEALALEVLQRY 60 Query: 61 --ASRRSTLREILADDRLPALERLRGYFTALNQRLVDRGFQHGCMIGNMTAELSEQSPVI 118 A R L E DR P LERLR +F L +R D F GCMI N T+E+++ P + Sbjct: 61 VDAVRVGMLFE---GDR-PPLERLRAHFEYLIERNKDLDFARGCMIANFTSEMADHYPDM 116 Query: 119 REQLLRIYGNWSTALEYAITAGQQDGSIPNQLSAKTLAGFLLNAWEGATLRVRVERSPDA 178 R L WSTA+ + Q DG + + LA F++ AW+G +R R+ + Sbjct: 117 RTALDHAMTRWSTAITSLLRQAQIDGKLSQAKDPERLARFMICAWQGTLMRARIAKIHQP 176 Query: 179 FDQFMEVVFNKVLS 192 FD F ++F +L+ Sbjct: 177 FDDFFALIFEDLLA 190