BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0217.p (318 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777117.1| chemotaxis signal transduction protein [Herb... 457 e-127 ref|YP_003775369.1| chemotaxis signal transduction protein [Herb... 440 e-121 ref|YP_003004925.1| response regulator receiver modulated CheW p... 424 e-117 ref|YP_003334077.1| response regulator receiver modulated CheW p... 424 e-117 ref|YP_003882467.1| chemotaxis protein CheV [Dickeya dadantii 39... 421 e-116 >ref|YP_003777117.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ65209.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 320 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 226/318 (71%), Positives = 265/318 (83%), Gaps = 2/318 (0%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGSANG--DGPGELFGINVFKIREIVPMVPITTA 58 MD+FQKEIDERTNLTS+NKFELLLFRLG+ +G D PGEL+GINVFKIREIVPM+ IT A Sbjct: 1 MDSFQKEIDERTNLTSTNKFELLLFRLGTPDGSTDKPGELYGINVFKIREIVPMMDITAA 60 Query: 59 AGTKAPMLGMVNIRGQVISVIDLPAVTGCKPKTGLNILLITEYARNTQAFAVESVEEIVR 118 AG ++PM+GMVNIRGQV+SV+DLPAV GCK G NILLITE+AR+TQAFAVESVEEIVR Sbjct: 61 AGMRSPMMGMVNIRGQVMSVVDLPAVAGCKAGHGNNILLITEFARHTQAFAVESVEEIVR 120 Query: 119 LDWSQVLSAEASAGGDLVTSIARLDSDLDGSRLVQVLDVEQILNMTSPVKQALDSGRNGE 178 LDWSQVL A++ + G LVTSIARLDS++DG RLVQVLDVE ILN+ SPVK+ + G Sbjct: 121 LDWSQVLPADSHSPGSLVTSIARLDSEVDGGRLVQVLDVEHILNLVSPVKEQMQPAPPGA 180 Query: 179 LKDLVKPGAIVLAADDSKVARALIEDGLTTLGVPFIMTKSGKEAWEKLQVLGAEAQREGK 238 + +KPGA+VLAADDS++ARALIE L L +PFIM G +AW+KLQ L A +EGK Sbjct: 181 AELKLKPGAVVLAADDSRMARALIEQCLKDLNLPFIMETDGLQAWKKLQQLSQAAAQEGK 240 Query: 239 QIADKVALMLTDLEMPEMDGFTLTRNIKADQRYKGIPVVIHSSLSGSANEDHVRSVGANG 298 + DKVA++LTDLEMPEMDGFTLTR IKA +YK +PVVIHSSL+GSANEDHVRSVGANG Sbjct: 241 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGANG 300 Query: 299 YVAKFAIDELAAALKKTL 316 YVAKF+ ELAA L++ L Sbjct: 301 YVAKFSPPELAAMLRQVL 318 >ref|YP_003775369.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] gb|ADJ63461.1| chemotaxis signal transduction protein [Herbaspirillum seropedicae SmR1] Length = 324 Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust. Identities = 220/322 (68%), Positives = 256/322 (79%), Gaps = 11/322 (3%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGSANGDGPGELFGINVFKIREIVPMVPITTAAG 60 MD FQKEIDERTNLT+SNKFELLLFRLG+ ELFGINVFKIREIVPM P+T AAG Sbjct: 1 MDNFQKEIDERTNLTASNKFELLLFRLGTDPHGERSELFGINVFKIREIVPMPPVTKAAG 60 Query: 61 TKAPMLGMVNIRGQVISVIDLPAVTGCKPKTGLNILLITEYARNTQAFAVESVEEIVRLD 120 T++PMLGMVNIRGQ+ISVIDLPAV GC PKTGLNILL+TEYAR+TQAFAVESV+EIVRL+ Sbjct: 61 TQSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 120 Query: 121 WSQVLSAEASAGGDLVTSIARLDSDLDGSRLVQVLDVEQILNMTSPVKQAL------DSG 174 WSQVLSAE S+GG VTSIARLD+D D SRL QVLDVEQIL+ P + L S Sbjct: 121 WSQVLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDRDLKMESLEKSA 180 Query: 175 RNGELKDLVKPGAIVLAADDSKVARALIEDGLTTLGVPFIMTKSGKEAWEKLQVLGAEAQ 234 +G ++PG + +AADDSKVAR+LIE GL + +P+ M +GKEAWEK+Q L EA+ Sbjct: 181 SHG-----IRPGTVAIAADDSKVARSLIEQGLRAMEIPYEMHVTGKEAWEKIQKLAREAR 235 Query: 235 REGKQIADKVALMLTDLEMPEMDGFTLTRNIKADQRYKGIPVVIHSSLSGSANEDHVRSV 294 EG+ I+DK++ +LTDLEMPEMDGFTLTRNIK + K IPV+IHSSLSGSANEDHVRSV Sbjct: 236 AEGRPISDKISFVLTDLEMPEMDGFTLTRNIKREDYLKSIPVIIHSSLSGSANEDHVRSV 295 Query: 295 GANGYVAKFAIDELAAALKKTL 316 G + YVAKF +ELAA + L Sbjct: 296 GGDAYVAKFEANELAATIYGVL 317 >ref|YP_003004925.1| response regulator receiver modulated CheW protein [Dickeya zeae Ech1591] gb|ACT07446.1| response regulator receiver modulated CheW protein [Dickeya zeae Ech1591] Length = 325 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 205/316 (64%), Positives = 250/316 (79%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGSANGDGPGELFGINVFKIREIVPMVPITTAAG 60 MD FQ+EI+ERTNLTSSNKFELLLFRLGSA G+GP ELFGINVFK+REIVPM +T AAG Sbjct: 1 MDKFQREIEERTNLTSSNKFELLLFRLGSATGEGPSELFGINVFKLREIVPMPTLTKAAG 60 Query: 61 TKAPMLGMVNIRGQVISVIDLPAVTGCKPKTGLNILLITEYARNTQAFAVESVEEIVRLD 120 PMLGM+NIRGQ+I VIDLPAV GC TG NILL+TEYAR+TQAFAVESV++IVRLD Sbjct: 61 MAPPMLGMINIRGQIIPVIDLPAVVGCAASTGRNILLVTEYARSTQAFAVESVDDIVRLD 120 Query: 121 WSQVLSAEASAGGDLVTSIARLDSDLDGSRLVQVLDVEQILNMTSPVKQALDSGRNGELK 180 WSQV +AEA +TSIARLDSD +RL VLDVEQIL+ P ++ + E Sbjct: 121 WSQVNTAEAGVSNTYITSIARLDSDPSSNRLALVLDVEQILHDIIPTEREIKIESVEEKT 180 Query: 181 DLVKPGAIVLAADDSKVARALIEDGLTTLGVPFIMTKSGKEAWEKLQVLGAEAQREGKQI 240 +KPGA+ + A+DSKVAR ++E GL + +P+IM +G EAW +++++ EAQ EG+ I Sbjct: 181 FHLKPGAVAIVAEDSKVARNMLETGLKVMNIPYIMHITGLEAWNRIKLMAQEAQAEGRPI 240 Query: 241 ADKVALMLTDLEMPEMDGFTLTRNIKADQRYKGIPVVIHSSLSGSANEDHVRSVGANGYV 300 +DK+A +LTDLEMPEMDGFTLTRNIK D+ K IPV+IHSSLSG+ANEDHVR+VGA+ YV Sbjct: 241 SDKIAFVLTDLEMPEMDGFTLTRNIKRDEALKHIPVIIHSSLSGTANEDHVRNVGADSYV 300 Query: 301 AKFAIDELAAALKKTL 316 AKF I+ELAAA+ K + Sbjct: 301 AKFEINELAAAIHKVV 316 >ref|YP_003334077.1| response regulator receiver modulated CheW protein [Dickeya dadantii Ech586] gb|ACZ77372.1| response regulator receiver modulated CheW protein [Dickeya dadantii Ech586] Length = 322 Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust. Identities = 207/316 (65%), Positives = 248/316 (78%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGSANGDGPGELFGINVFKIREIVPMVPITTAAG 60 MD FQKEI+ERTNLTSSNKFELLLFRLGSA G+GP ELFGINVFK+REIVPM +T AAG Sbjct: 1 MDKFQKEIEERTNLTSSNKFELLLFRLGSATGEGPSELFGINVFKLREIVPMPTLTKAAG 60 Query: 61 TKAPMLGMVNIRGQVISVIDLPAVTGCKPKTGLNILLITEYARNTQAFAVESVEEIVRLD 120 PMLGM+NIRGQ+I VIDLPAV GC TG NILL+TEYAR+TQAFAVESV++IVRLD Sbjct: 61 MTPPMLGMINIRGQIIPVIDLPAVVGCAASTGRNILLVTEYARSTQAFAVESVDDIVRLD 120 Query: 121 WSQVLSAEASAGGDLVTSIARLDSDLDGSRLVQVLDVEQILNMTSPVKQALDSGRNGELK 180 WSQV +AEA +TSIARLDSD +RL VLDVEQIL+ P + + E Sbjct: 121 WSQVNTAEAGVSNSYITSIARLDSDPASNRLALVLDVEQILHDIIPTAREIKIESVEEKT 180 Query: 181 DLVKPGAIVLAADDSKVARALIEDGLTTLGVPFIMTKSGKEAWEKLQVLGAEAQREGKQI 240 +KPGA+ + A+DSKVAR ++E GL + +P+IM +G EAW K++ + EA+ EG+ I Sbjct: 181 FHLKPGAVAIVAEDSKVARTMLETGLKVMNIPYIMHITGLEAWNKIKSMAEEAKAEGRPI 240 Query: 241 ADKVALMLTDLEMPEMDGFTLTRNIKADQRYKGIPVVIHSSLSGSANEDHVRSVGANGYV 300 +DK+A +LTDLEMPEMDGFTLTRNIK D+ K IPV+IHSSLSGSANEDHVR+VGA+ YV Sbjct: 241 SDKIAFVLTDLEMPEMDGFTLTRNIKRDEALKHIPVIIHSSLSGSANEDHVRNVGADSYV 300 Query: 301 AKFAIDELAAALKKTL 316 AKF I+ELAAA+ K + Sbjct: 301 AKFEINELAAAIHKVV 316 >ref|YP_003882467.1| chemotaxis protein CheV [Dickeya dadantii 3937] gb|ADM97910.1| Chemotaxis protein CheV [Dickeya dadantii 3937] Length = 325 Score = 421 bits (1082), Expect = e-116, Method: Compositional matrix adjust. Identities = 204/316 (64%), Positives = 248/316 (78%) Query: 1 MDAFQKEIDERTNLTSSNKFELLLFRLGSANGDGPGELFGINVFKIREIVPMVPITTAAG 60 MD FQ+EI+ERTNLTSSNKFELLLFRLGSA G+GP ELFGINVFK+REIVPM +T AAG Sbjct: 1 MDKFQREIEERTNLTSSNKFELLLFRLGSATGEGPSELFGINVFKLREIVPMPTLTKAAG 60 Query: 61 TKAPMLGMVNIRGQVISVIDLPAVTGCKPKTGLNILLITEYARNTQAFAVESVEEIVRLD 120 PMLGM+NIRGQ+I VIDLPAV GC TG NILL+TEYAR+TQAFAVESV++IVRLD Sbjct: 61 MIPPMLGMINIRGQIIPVIDLPAVVGCAASTGRNILLVTEYARSTQAFAVESVDDIVRLD 120 Query: 121 WSQVLSAEASAGGDLVTSIARLDSDLDGSRLVQVLDVEQILNMTSPVKQALDSGRNGELK 180 WSQV +AEA +TSIARLDSD +RL VLDVEQIL+ P ++ + E Sbjct: 121 WSQVNTAEAGVSNTYITSIARLDSDPSSNRLALVLDVEQILHDIIPTEREIKIESVEEKT 180 Query: 181 DLVKPGAIVLAADDSKVARALIEDGLTTLGVPFIMTKSGKEAWEKLQVLGAEAQREGKQI 240 +KPGA+ + A+DSKVAR ++E GL + +P+IM +G EAW K++ + EA+ EG+ I Sbjct: 181 FHLKPGAVAIVAEDSKVARTMLETGLKVMNIPYIMHITGLEAWNKIKAMAEEAKAEGRPI 240 Query: 241 ADKVALMLTDLEMPEMDGFTLTRNIKADQRYKGIPVVIHSSLSGSANEDHVRSVGANGYV 300 +DK+A +LTDLEMPEMDGFTLTRNIK D+ K IPV+IHSSLSG+ANEDHVR+VGA+ YV Sbjct: 241 SDKIAFVLTDLEMPEMDGFTLTRNIKRDEVLKSIPVIIHSSLSGTANEDHVRNVGADSYV 300 Query: 301 AKFAIDELAAALKKTL 316 AKF I+ELAAA+ + Sbjct: 301 AKFEINELAAAIHSVV 316