BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0206.p (203 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774711.1| OmpA protein [Herbaspirillum seropedicae SmR... 261 6e-68 ref|YP_285208.1| OmpA/MotB [Dechloromonas aromatica RCB] >gi|718... 124 9e-27 ref|YP_004157566.1| ompa/motb domain-containing protein [Variovo... 120 1e-25 emb|CBA28654.1| hypothetical protein Csp_A08220 [Curvibacter put... 109 2e-22 ref|YP_001895712.1| OmpA/MotB domain-containing protein [Burkhol... 104 8e-21 >ref|YP_003774711.1| OmpA protein [Herbaspirillum seropedicae SmR1] gb|ADJ62803.1| OmpA protein [Herbaspirillum seropedicae SmR1] Length = 190 Score = 261 bits (666), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 128/189 (67%), Positives = 154/189 (81%) Query: 15 ATLALLLAACAGPKERFVLLPQPDGSSSSIVVKSGGSETALATPYASVETQAGKAGKTLT 74 A LA+LLA CAGP+ERF+LLPQPDGS+SSIVVK+ ETALATPYASVET GK KTLT Sbjct: 2 AALAVLLAGCAGPRERFLLLPQPDGSASSIVVKTATGETALATPYASVETAGGKVDKTLT 61 Query: 75 LSEADVSKRYAPVMENLPLRPRTYVLQFELGRDRLTPASRKFLDQAIDEFKQFPAGEFLV 134 ++ ADV KRYA V+ +LP RPR+Y L FELG DRLTPAS+ L +AI E K FPAGEF++ Sbjct: 62 VAPADVEKRYADVLGSLPARPRSYDLLFELGTDRLTPASQDALKKAIAEIKDFPAGEFVL 121 Query: 135 IGHADNIGNDAFNDTLSVRRAKLVETELIRAKVNLISIEVIGKGSREPRFPARKGVPEPR 194 GHADNIG++ ND LS+RRA+L+E EL RA V +SIEVIGKG+R+PR P ++GV EPR Sbjct: 122 TGHADNIGSETNNDALSLRRARLIERELRRADVKALSIEVIGKGARDPRVPQKRGVAEPR 181 Query: 195 NRYVEIKLR 203 NR+VEIK+R Sbjct: 182 NRFVEIKIR 190 >ref|YP_285208.1| OmpA/MotB [Dechloromonas aromatica RCB] gb|AAZ46738.1| OmpA/MotB [Dechloromonas aromatica RCB] Length = 195 Score = 124 bits (311), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 111/203 (54%), Gaps = 8/203 (3%) Query: 1 MNKLIQQFTRLLAPATLALLLAACAGPKERFVLLPQPDGSSSSIVVKSGGSETALATPYA 60 MNK I L +L+L+AC ER VLLP DG S++VV+ E L PYA Sbjct: 1 MNKTI-----LCVALAGSLVLSACT--TERVVLLPSADGGQSAVVVRDPAGEVLLNQPYA 53 Query: 61 SVETQAGKAGKTLTLSEADVSKRYAPVMENLPLRPRTYVLQFELGRDRLTPASRKFLDQA 120 +V+ + + S +V +RYA V+ P RPR+YVL FE G + LT S+ L Sbjct: 54 AVKRRL-DSNVGYQSSPEEVRERYANVLAAQPARPRSYVLYFEAGGNILTQESKAALVNI 112 Query: 121 IDEFKQFPAGEFLVIGHADNIGNDAFNDTLSVRRAKLVETELIRAKVNLISIEVIGKGSR 180 E + A E +VIGH D +G+ ND LS++RA+ + LI + ++ +E +G+G R Sbjct: 113 RKEIAERAASEVMVIGHTDRVGSVEGNDKLSLQRAEGLRDLLIESGISAEKMEAVGRGER 172 Query: 181 EPRFPARKGVPEPRNRYVEIKLR 203 +P P V EP+NR VEI +R Sbjct: 173 DPLVPTADEVDEPKNRRVEINVR 195 >ref|YP_004157566.1| ompa/motb domain-containing protein [Variovorax paradoxus EPS] gb|ADU39455.1| OmpA/MotB domain protein [Variovorax paradoxus EPS] Length = 207 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/196 (36%), Positives = 106/196 (54%), Gaps = 4/196 (2%) Query: 11 LLAPATLALLLAACAGPKERFVLLPQPDGSSSSIVVKSGGSETALATPYASVETQAGKAG 70 LL+ A + LLAAC+ P R VLLPQ DG S++VV++ E L+ PY G +G Sbjct: 13 LLSTALITALLAACSTPGTRVVLLPQADGKPSAVVVRAKDGEEVLSKPYQRATAAVGASG 72 Query: 71 KTLTLSEADVSKRYA---PVMENLPLRPRTYVLQFELGRDRLTPASRKFLDQAIDEFKQF 127 + + +AD +K A P+ + P P+ Y + FE+G LTPAS++ + +A+ Sbjct: 73 APV-VDQADAAKVQAENKPLFDMRPPPPQRYTVFFEVGGTTLTPASQQIMTEALAAALAR 131 Query: 128 PAGEFLVIGHADNIGNDAFNDTLSVRRAKLVETELIRAKVNLISIEVIGKGSREPRFPAR 187 G+ +V GH D GN ND LS RRA+ V + + +E +G+G R+ P Sbjct: 132 SGGDIVVTGHTDTKGNGESNDQLSRRRAQEVVQLFVEQRFPANRVEAVGRGERDLAVPTA 191 Query: 188 KGVPEPRNRYVEIKLR 203 V EPRNR V I++R Sbjct: 192 DEVDEPRNRRVTIEVR 207 >emb|CBA28654.1| hypothetical protein Csp_A08220 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 182 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 70/184 (38%), Positives = 98/184 (53%), Gaps = 3/184 (1%) Query: 21 LAACAGPKERFVLLPQPDGSSSSIVVKSGGSETALATPYASVETQ-AGKAGKTLTLSEAD 79 + ACA P R LLPQ DG ++++ V+S L PY + Q G+ L+ +E + Sbjct: 1 MQACA-PLSRVTLLPQDDGRATAVQVQSAAGVVDLTQPYQTAALQRDGRLEAQLSNAE-E 58 Query: 80 VSKRYAPVMENLPLRPRTYVLQFELGRDRLTPASRKFLDQAIDEFKQFPAGEFLVIGHAD 139 VSKR+ V+ L P + LQFE G LTP S+ L +++ G+ V+GH D Sbjct: 59 VSKRHGAVLALPFLPPVRFTLQFEPGTSTLTPDSQNQLPGILEQATARAGGDIQVVGHTD 118 Query: 140 NIGNDAFNDTLSVRRAKLVETELIRAKVNLISIEVIGKGSREPRFPARKGVPEPRNRYVE 199 G+ NDTLS++RA+ V LI+ +E IG+G REP P V EPRNR E Sbjct: 119 RTGSPQANDTLSLQRAQAVRNLLIQRGFEPALVEAIGRGEREPVVPTEANVNEPRNRRAE 178 Query: 200 IKLR 203 I +R Sbjct: 179 IIIR 182 >ref|YP_001895712.1| OmpA/MotB domain-containing protein [Burkholderia phytofirmans PsJN] gb|ACD16488.1| OmpA/MotB domain protein [Burkholderia phytofirmans PsJN] Length = 204 Score = 104 bits (260), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 66/205 (32%), Positives = 102/205 (49%), Gaps = 3/205 (1%) Query: 1 MNKLIQQFTRLLAPATLALL-LAACAGPKERFVLLPQPDGSSSSIVVKSGGSETALATPY 59 M I+++ A A + L LAAC+ P ++ +LLP PDG ++VV+S E + Y Sbjct: 1 MKASIRRYGLAWAAAFIMLASLAACSTP-DKIILLPDPDGKVGAVVVRSATGEQTIDKAY 59 Query: 60 ASVETQAGKAGKTLTLSEADVSKRYAPVMENLPLRPRTYVLQFEL-GRDRLTPASRKFLD 118 A V+ G + + S++ V RY ++ P RP T+ + F L P S + Sbjct: 60 AGVDVTKGGSIEPTVDSQSTVQARYGELLAARPPRPMTFTIFFLFDSATELAPESAATVQ 119 Query: 119 QAIDEFKQFPAGEFLVIGHADNIGNDAFNDTLSVRRAKLVETELIRAKVNLISIEVIGKG 178 + +PA + +V+GH D G+ FND LS++RA+ V LI+ + IE +G Sbjct: 120 KLKTVLATWPAPQLVVVGHTDLAGSQEFNDRLSMQRAQTVAAFLIKQGIPAQRIETAARG 179 Query: 179 SREPRFPARKGVPEPRNRYVEIKLR 203 REP P GVP NR I ++ Sbjct: 180 KREPLVPTADGVPHRMNRRAVITIQ 204