BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0183.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003777161.1| two component response regulator protein [He... 372 e-101 ref|YP_001894951.1| winged helix family two component transcript... 302 3e-80 ref|YP_557786.1| two component transcriptional regulator [Burkho... 302 3e-80 ref|ZP_06843413.1| two component transcriptional regulator, wing... 301 4e-80 ref|YP_003907596.1| winged helix family two component transcript... 301 7e-80 >ref|YP_003777161.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ65253.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/232 (77%), Positives = 210/232 (90%), Gaps = 3/232 (1%) Query: 1 MLDHAGNIVFVEDDAHIRKLVRGALEQEGFIVHEARTAREGMVEAGTRKPDLVIVDLGLP 60 M +HAGNIVF+EDD HIRKLVR ALEQEGF+VHEA++AREG+ EAGTRKPDL+I+DLGLP Sbjct: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 Query: 61 DQDGKQVIADIRSWSDVPIVILSARTQEAEKVAALDAGADDYLTKPFGVPELLARIRAQL 120 D DGKQVI++IR+WS VPIVILSARTQE+EKV ALDAGADDYL KPFG+PELLAR+RAQL Sbjct: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 Query: 121 RRRSQASAA---TGRFRLGDLLIDLPARTASKGGEAVHLTQIEHRLIATLLRDAGRVITH 177 RR ++AS+A +GR+RLGD+++DLPAR+ S+ GEA+HLTQIE+RL++TLLRDAGRVITH Sbjct: 121 RRHARASSAGQSSGRYRLGDVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH 180 Query: 178 RTLLAAGWGPSHTEDHHYLRIYMQRLRQKLEDDPAQPKHIVTEIGVGYRIVN 229 R LL AGWGPSH ED HYLRIYMQRLRQKLE D AQP HI+TEIGVGYR+ + Sbjct: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVAD 232 >ref|YP_001894951.1| winged helix family two component transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD15727.1| two component transcriptional regulator, winged helix family [Burkholderia phytofirmans PsJN] Length = 232 Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 149/231 (64%), Positives = 180/231 (77%), Gaps = 1/231 (0%) Query: 1 MLDHAGNIVFVEDDAHIRKLVRGALEQEGFIVHEARTAREGMVEAGTRKPDLVIVDLGLP 60 M D + +V +ED+ IR+ VR ALE EG +VH+A T ++G+VEA TRKPDLVIVDLGLP Sbjct: 1 MSDPSITVVLIEDEKQIRRFVRTALEGEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DQDGKQVIADIRSWSDVPIVILSARTQEAEKVAALDAGADDYLTKPFGVPELLARIRAQL 120 D DG VI ++R WS++P+++LSARTQE+EKVAALDAGADDYLTKPFGV ELLARIRA + Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHM 120 Query: 121 RRRSQASA-ATGRFRLGDLLIDLPARTASKGGEAVHLTQIEHRLIATLLRDAGRVITHRT 179 RRR+Q A T + R G + +DL R S+ G VHLT IE+RL+ATL+R AGRV+THR Sbjct: 121 RRRNQGGANETPQVRFGTVTVDLALRQVSRDGAVVHLTPIEYRLLATLVRHAGRVLTHRQ 180 Query: 180 LLAAGWGPSHTEDHHYLRIYMQRLRQKLEDDPAQPKHIVTEIGVGYRIVNA 230 LL WGPSH E HHYLRIYM LR KLE DPAQP+HI+TE GVGYR+V A Sbjct: 181 LLREVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIITETGVGYRLVGA 231 >ref|YP_557786.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE29734.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 232 Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 149/231 (64%), Positives = 180/231 (77%), Gaps = 1/231 (0%) Query: 1 MLDHAGNIVFVEDDAHIRKLVRGALEQEGFIVHEARTAREGMVEAGTRKPDLVIVDLGLP 60 M D + +V +ED+ IR+ VR ALE EG +VH+A T ++G+VEA TRKPDLVIVDLGLP Sbjct: 1 MTDPSITVVLIEDEKQIRRFVRTALEGEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DQDGKQVIADIRSWSDVPIVILSARTQEAEKVAALDAGADDYLTKPFGVPELLARIRAQL 120 D DG VI ++R WS++P+++LSARTQE EKVAALDAGADDYLTKPFGV ELLARIRA + Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQETEKVAALDAGADDYLTKPFGVSELLARIRAHM 120 Query: 121 RRRSQASA-ATGRFRLGDLLIDLPARTASKGGEAVHLTQIEHRLIATLLRDAGRVITHRT 179 RRR+Q A + + R G + +DL R S+ G AVHLT IE+RL+ATL+R AGRV+THR Sbjct: 121 RRRNQGGANESPQVRFGTVTVDLALRQVSRDGAAVHLTPIEYRLLATLVRHAGRVLTHRQ 180 Query: 180 LLAAGWGPSHTEDHHYLRIYMQRLRQKLEDDPAQPKHIVTEIGVGYRIVNA 230 LL WGPSH E HHYLRIYM LR KLE DPAQP+HI+TE GVGYR+V A Sbjct: 181 LLREVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIITETGVGYRLVGA 231 >ref|ZP_06843413.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] gb|EFG68927.1| two component transcriptional regulator, winged helix family [Burkholderia sp. Ch1-1] Length = 232 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 149/231 (64%), Positives = 180/231 (77%), Gaps = 1/231 (0%) Query: 1 MLDHAGNIVFVEDDAHIRKLVRGALEQEGFIVHEARTAREGMVEAGTRKPDLVIVDLGLP 60 M D + +V +ED+ IR+ VR ALE EG +VH+A T ++G+VEA TRKPDLVIVDLGLP Sbjct: 1 MSDPSITVVLIEDEKQIRRFVRTALEGEGIVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DQDGKQVIADIRSWSDVPIVILSARTQEAEKVAALDAGADDYLTKPFGVPELLARIRAQL 120 D DG VI ++R WS++P+++LSARTQE EKVAALDAGADDYLTKPFGV ELLARIRA + Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQETEKVAALDAGADDYLTKPFGVSELLARIRAHM 120 Query: 121 RRRSQASA-ATGRFRLGDLLIDLPARTASKGGEAVHLTQIEHRLIATLLRDAGRVITHRT 179 RRR+Q A + + R G + +DL R S+ G AVHLT IE+RL+ATL+R AGRV+THR Sbjct: 121 RRRNQGGANESPQVRFGTVTVDLALRQVSRDGAAVHLTPIEYRLLATLVRHAGRVLTHRQ 180 Query: 180 LLAAGWGPSHTEDHHYLRIYMQRLRQKLEDDPAQPKHIVTEIGVGYRIVNA 230 LL WGPSH E HHYLRIYM LR KLE DPAQP+HI+TE GVGYR+V A Sbjct: 181 LLREVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIITETGVGYRLVGA 231 >ref|YP_003907596.1| winged helix family two component transcriptional regulator [Burkholderia sp. CCGE1003] gb|ADN58305.1| two component transcriptional regulator, winged helix family [Burkholderia sp. CCGE1003] Length = 232 Score = 301 bits (770), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 149/230 (64%), Positives = 180/230 (78%), Gaps = 1/230 (0%) Query: 1 MLDHAGNIVFVEDDAHIRKLVRGALEQEGFIVHEARTAREGMVEAGTRKPDLVIVDLGLP 60 M D + +V +ED+ IR+ VR ALE EG +VH+A T ++G+VEA TRKPDLVIVDLGLP Sbjct: 1 MSDLSTTVVLIEDEKQIRRFVRAALEGEGMVVHDAETGKQGLVEAATRKPDLVIVDLGLP 60 Query: 61 DQDGKQVIADIRSWSDVPIVILSARTQEAEKVAALDAGADDYLTKPFGVPELLARIRAQL 120 D DG VI ++R WS++P+++LSARTQE+EKVAALDAGADDYLTKPFGV ELLARIRA L Sbjct: 61 DTDGLDVIRELRGWSELPVIVLSARTQESEKVAALDAGADDYLTKPFGVSELLARIRAHL 120 Query: 121 RRRSQASA-ATGRFRLGDLLIDLPARTASKGGEAVHLTQIEHRLIATLLRDAGRVITHRT 179 RRR+Q A + + R G + +DL R ++ G AVHLT IE+RL+ATL+R AGRV+THR Sbjct: 121 RRRNQGGANESPQVRFGAVSVDLALRQVTRDGAAVHLTPIEYRLLATLVRHAGRVLTHRQ 180 Query: 180 LLAAGWGPSHTEDHHYLRIYMQRLRQKLEDDPAQPKHIVTEIGVGYRIVN 229 LL WGPSH E HHYLRIYM LR KLE DPAQP+HIVTE GVGYR+V Sbjct: 181 LLRDVWGPSHVESHHYLRIYMAHLRGKLERDPAQPEHIVTETGVGYRLVG 230