BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0163.p (276 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774675.1| methyl-accepting chemotaxis I (serine chemor... 285 6e-75 ref|YP_001951971.1| methyl-accepting chemotaxis sensory transduc... 84 3e-14 ref|YP_003376626.1| methyl-accepting chemotaxis protein [Xanthom... 80 2e-13 ref|ZP_08404611.1| methyl-accepting chemotaxis sensory transduce... 80 4e-13 ref|YP_003376627.1| methyl-accepting chemotaxis protein [Xanthom... 79 8e-13 >ref|YP_003774675.1| methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ62767.1| methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 574 Score = 285 bits (728), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 141/217 (64%), Positives = 181/217 (83%) Query: 1 MISNIKIGARLALGFCLVLLCAAAILLNGLWRMTQMESSSAYIIDQKVASMTAAMSMRES 60 MI +KIG+RLA GFCL+LL A AILL GLWRM ++E++S Y+ID+KVA+MTAA++MRE+ Sbjct: 1 MIQRLKIGSRLAFGFCLILLLATAILLIGLWRMAELEAASEYVIDEKVAAMTAALNMREA 60 Query: 61 GSALALALRKVVTPTDAAEGQQENQRLAKILQAYAGYEGQLTKLTSTDKGKALLTASAAE 120 GS LALALRKVVTPTDAAEG+ E+ L+KILQAYAG+E Q+T+L+ +GK LLTA++ + Sbjct: 61 GSQLALALRKVVTPTDAAEGKAEDAHLSKILQAYAGFEKQITELSPAGRGKELLTAASGQ 120 Query: 121 RKVLFPIVEKIREMVGAGNYFDAAQLLKSDFLPSYDKWMASVAALAAYQQEDMSAAYVEF 180 K LFPIVE IR+ V + NYFDAAQLLKSDFLP++DKWMASV ALAA+QQEDM AA+ E Sbjct: 121 SKQLFPIVETIRQQVASNNYFDAAQLLKSDFLPAHDKWMASVGALAAFQQEDMKAAHAEA 180 Query: 181 QNSYHSGRIGMIVIGLVTLLLGAFFTWSITRTITAPL 217 ++SY +IGM+++G++TL LG FFT+ ITR+I PL Sbjct: 181 KDSYRKAQIGMLLMGVLTLGLGFFFTFVITRSIVGPL 217 >ref|YP_001951971.1| methyl-accepting chemotaxis sensory transducer [Geobacter lovleyi SZ] gb|ACD95451.1| methyl-accepting chemotaxis sensory transducer [Geobacter lovleyi SZ] Length = 868 Score = 83.6 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 52/217 (23%), Positives = 109/217 (50%) Query: 1 MISNIKIGARLALGFCLVLLCAAAILLNGLWRMTQMESSSAYIIDQKVASMTAAMSMRES 60 M+ N+KIG RLA+GF VL+ I + +T +++ +I+ K+ + +R S Sbjct: 1 MLKNMKIGKRLAVGFAAVLILLTIIAVVSYVNVTSLDNEMDSLIEDKIVKIDLLTDIRIS 60 Query: 61 GSALALALRKVVTPTDAAEGQQENQRLAKILQAYAGYEGQLTKLTSTDKGKALLTASAAE 120 + A A+R ++ ++ AE Q+E R+ + + K+ TD G+ L+ A + Sbjct: 61 ANVSARAIRNMLLVSEPAERQKELARVKEAGEKITKGIEDFEKMIKTDSGRKLMAAVKDK 120 Query: 121 RKVLFPIVEKIREMVGAGNYFDAAQLLKSDFLPSYDKWMASVAALAAYQQEDMSAAYVEF 180 R + +++ ++ +G +A QLL S S ++ ++ YQ++ + + + Sbjct: 121 RAAMQADQKQVIDLSQSGKRDEAIQLLTSKLRQSQAEYFKAIGEFMDYQKKLVKESGKKG 180 Query: 181 QNSYHSGRIGMIVIGLVTLLLGAFFTWSITRTITAPL 217 + + ++V+G+ +L++G F W IT++I P+ Sbjct: 181 IALANQTKTIVLVLGIASLIIGIFMGWFITKSIVTPI 217 >ref|YP_003376626.1| methyl-accepting chemotaxis protein [Xanthomonas albilineans GPE PC73] emb|CBA16634.1| putative methyl-accepting chemotaxis protein [Xanthomonas albilineans] Length = 737 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 106/216 (49%), Gaps = 8/216 (3%) Query: 6 KIGARLALGFCLVLLCAAAILLNGLWRMTQMESSSAYIIDQKVASMTAAMSMRESGSALA 65 +G RLA F +++L + +++ GL + Q I+++ +A+M A+ M + S +A Sbjct: 9 NVGVRLATAFGILILLSCTLVVAGLITLFQARGRLDSIVNRNIAAMRASSEMLNASSVVA 68 Query: 66 LALRKVVTPTDAAEGQQENQRLAKILQA----YAGYEGQLTKLTSTDKGKALLTASAAER 121 + +R +V PT Q++N R +K++ Y ++++++S +G A R Sbjct: 69 INIRNIVLPT----SQEDNIRFSKVIDQQRARYLAARKRMSEISSDAQGLAKAEEIDRMR 124 Query: 122 KVLFPIVEKIREMVGAGNYFDAAQLLKSDFLPSYDKWMASVAALAAYQQEDMSAAYVEFQ 181 + + ++ ++ +A L+ + P KW S+A A Q + S AY E Sbjct: 125 AMSVEVNNRVIDLGMHDKPKEALDLMMAKAAPLTQKWQESIAVYADLQAKRSSDAYAEAS 184 Query: 182 NSYHSGRIGMIVIGLVTLLLGAFFTWSITRTITAPL 217 S GR +IV G + +L+ + W ITR++T PL Sbjct: 185 ESMDRGRNLLIVGGALVVLVSSLLAWLITRSLTVPL 220 >ref|ZP_08404611.1| methyl-accepting chemotaxis sensory transducer [Hylemonella gracilis ATCC 19624] gb|EGI78289.1| methyl-accepting chemotaxis sensory transducer [Hylemonella gracilis ATCC 19624] Length = 625 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 15/226 (6%) Query: 2 ISNIKIGARLALGFCLVLLCAAAILLNGLWRMTQMESSSAYIIDQKVASMTAAMSMRESG 61 + N++IGARL LGF ++L+ A + L G+ RM Q+ I D+ + +M E+ Sbjct: 4 LKNMRIGARLGLGFGVILVLLAVVSLLGISRMAQVYKELQAITDENNEKVKLTENMSETI 63 Query: 62 SALALALRKVVTPTDAAEGQQENQRLAKILQAYAGYEGQLTKLTSTDKGKALLTASAAER 121 + + R VV T+ A + ++ L + Y+ E L K+ ++L + S AE+ Sbjct: 64 THIGALARDVVLQTEEAGIRAAHKSLLETRSGYSKLEADLAKML-----ESLASTSQAEK 118 Query: 122 KVLFP----------IVEKIREMVGAGNYFDAAQLLKSDFLPSYDKWMASVAALAAYQQE 171 L I +K+ E+ A +A Q+L D +P+ +W A++ LA ++ + Sbjct: 119 DTLAKTKTIRARADAITDKVVELGLANRNAEATQMLTRDMVPAQREWQAAMDELADFEYK 178 Query: 172 DMSAAYVEFQNSYHSGRIGMIVIGLVTLLLGAFFTWSITRTITAPL 217 A V + Y + +I + ++ + +G F + ITR+ITAP+ Sbjct: 179 ASDDAEVRAKGVYETAMASIITLTVIAIAIGVFVAYVITRSITAPV 224 >ref|YP_003376627.1| methyl-accepting chemotaxis protein [Xanthomonas albilineans GPE PC73] emb|CBA16635.1| putative methyl-accepting chemotaxis protein [Xanthomonas albilineans] Length = 738 Score = 79.0 bits (193), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 60/218 (27%), Positives = 111/218 (50%), Gaps = 12/218 (5%) Query: 6 KIGARLALGFCLVLLCAAAILLNGLWRMTQMESSSAYIIDQKVASMTAAMSMRESGSALA 65 +G RL+ F +++L + +++ GL + Q I+++ +A++ A+ M +S SA+A Sbjct: 9 NVGTRLSTAFGILILLSCTLVVAGLITLIQARGRLDSIVNRNIAAIRASSEMLDSSSAVA 68 Query: 66 LALRKVVTPTDAAEGQQENQRLAK-ILQAYAGY---EGQLTKLTSTDKGKALLTASAAER 121 + +R +V PT Q++N R +K I+Q A Y +L+++ S + +A L R Sbjct: 69 INIRNIVLPT----SQEDNIRFSKVIVQQRARYLAARKRLSEIPSDAQSRAKLEEIDRTR 124 Query: 122 KVLFPIVEKIREMVGAGNYFDAA--QLLKSDFLPSYDKWMASVAALAAYQQEDMSAAYVE 179 + + ++ ++ NY A L+ + +P KW ++AA A Q + S AY Sbjct: 125 AMSVEVNNRVIDL--GMNYKPEAALDLMMAKSVPVVQKWQDAIAAYADLQAKLSSDAYAS 182 Query: 180 FQNSYHSGRIGMIVIGLVTLLLGAFFTWSITRTITAPL 217 S GR +I G + +L+ + W ITR++T PL Sbjct: 183 ASESMDRGRNLLIAGGALVVLVSSLLAWLITRSLTMPL 220