BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0131.p (289 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752050.1| DNA binding protein [Collimonas fungivorans ... 380 e-103 ref|ZP_07673784.1| transcriptional regulator, LysR family [Ralst... 338 5e-91 ref|YP_001892535.1| LysR family transcriptional regulator [Ralst... 335 5e-90 gb|AEG71109.1| cys regulon transcriptional activator-related pro... 329 3e-88 emb|CAQ18195.1| hypothetical protein RSMK05042 [Ralstonia solana... 328 4e-88 >ref|YP_004752050.1| DNA binding protein [Collimonas fungivorans Ter331] gb|AEK61227.1| DNA binding protein [Collimonas fungivorans Ter331] Length = 289 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/284 (65%), Positives = 223/284 (78%), Gaps = 2/284 (0%) Query: 2 HSLDALLMFIEAANLGSFSAAARKLGRQQSSVSEAIANLEIDLGVTLFDRSTRKPTLTEH 61 HSL+ L MF EAA LGSFSAAARKLG+QQS+VSEAIANLEIDLG+TLFDRSTR+PTLTE Sbjct: 3 HSLETLFMFAEAATLGSFSAAARKLGKQQSTVSEAIANLEIDLGLTLFDRSTRRPTLTEQ 62 Query: 62 GHALLTHARQLLDANDKLSRAAQQLAGGREAQLSFALSDTYQSDVFEKSLAQLEQRFPDL 121 G A+L HA+Q+++A D+L R+A +LAGG E QL+ LSDTYQSD FE L EQR+P+L Sbjct: 63 GRAMLVHAQQVMEAADRLQRSAHRLAGGLEPQLTLVLSDTYQSDRFEHILTSFEQRYPEL 122 Query: 122 SLECLIAEDEDAVDLVQSGRVQLALVAAQPSYPPDIGFETIADQSEIGLYVSTAHPLAQA 181 LEC+IAE D V LVQ GR L LVAAQ YPPDIGFE++ D+S IGLYV HPLA+A Sbjct: 123 ELECMIAERNDVVSLVQEGRANLGLVAAQADYPPDIGFESVPDRSAIGLYVGKQHPLAKA 182 Query: 182 AHISGDMLRQARELRVNTYTHRDQARRQQPGLHWSASSYLILLEMTELGFGWAELPRWVV 241 HIS +ML ARELR++T+ D A +++ G W+ASSYL+LLEMTELGFGWAELP W+ Sbjct: 183 RHISTEMLHAARELRLSTFA--DDAVQRRRGKCWTASSYLLLLEMTELGFGWAELPHWMA 240 Query: 242 KRFGAAELKELKVHGWPRSIRVHVIWSRERGLGQAGAWLCNTFL 285 KRF A L EL+V GWP+SI+V +WSR+RGLG AG WL +T + Sbjct: 241 KRFAAGSLLELQVRGWPKSIQVDAVWSRQRGLGPAGGWLLDTLM 284 >ref|ZP_07673784.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] gb|EFP67843.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA] Length = 294 Score = 338 bits (867), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 169/277 (61%), Positives = 209/277 (75%), Gaps = 6/277 (2%) Query: 15 NLGSFSAAARKLGRQQSSVSEAIANLEIDLGVTLFDRSTRKPTLTEHGHALLTHARQLLD 74 LGSFSAAARKLG++QS++SEAIANLEIDLG+TLFDRSTR+PTLTE GHA+LT R++LD Sbjct: 16 TLGSFSAAARKLGKRQSTISEAIANLEIDLGLTLFDRSTRQPTLTEAGHAMLTQVRRVLD 75 Query: 75 ANDKLSRAAQQLAGGREAQLSFALSDTYQSDVFEKSLAQLEQRFPDLSLECLIAEDEDAV 134 A+ ++ R A Q+AGG EA+L+ +SDTYQSD +E++LA LEQR+PDL LECLIAE ED V Sbjct: 76 ASAQMDRLAAQMAGGLEARLTLVMSDTYQSDRYEQTLATLEQRYPDLELECLIAEHEDVV 135 Query: 135 DLVQSGRVQLALVAAQPSYPPDIGFETIADQSEIGLYVSTAHPLAQAA--HISGDMLRQA 192 D++Q GR Q+ LVAAQP+YP DIG+ TIA+QSEIGL+V HPLA+ + +LR+A Sbjct: 136 DIIQLGRAQIGLVAAQPAYPADIGWATIAEQSEIGLFVGLQHPLARYGDEEVPHAILREA 195 Query: 193 RELRVNTYTH----RDQARRQQPGLHWSASSYLILLEMTELGFGWAELPRWVVKRFGAAE 248 RELR+NT+ R A + WSA SYL+LLEM LGFGW ELPRW+V F A Sbjct: 196 RELRLNTFVDPTGPRTDAVPVRSLRRWSAPSYLMLLEMAVLGFGWTELPRWLVDHFAADR 255 Query: 249 LKELKVHGWPRSIRVHVIWSRERGLGQAGAWLCNTFL 285 L E++ GWPR + V +WSR R LGQAGAWL T L Sbjct: 256 LHEVRARGWPRLVPVDAVWSRNRTLGQAGAWLLETML 292 >ref|YP_001892535.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] ref|YP_002984037.1| LysR family transcriptional regulator [Ralstonia pickettii 12D] gb|ACD29108.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] gb|ACS65365.1| transcriptional regulator, LysR family [Ralstonia pickettii 12D] Length = 294 Score = 335 bits (859), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 168/277 (60%), Positives = 208/277 (75%), Gaps = 6/277 (2%) Query: 15 NLGSFSAAARKLGRQQSSVSEAIANLEIDLGVTLFDRSTRKPTLTEHGHALLTHARQLLD 74 LGSFSAAARKLG++QS++SEAIANLEIDLG+TLFDRSTR+PTLTE GHA+LT R++LD Sbjct: 16 TLGSFSAAARKLGKRQSTISEAIANLEIDLGLTLFDRSTRQPTLTEAGHAMLTQVRRVLD 75 Query: 75 ANDKLSRAAQQLAGGREAQLSFALSDTYQSDVFEKSLAQLEQRFPDLSLECLIAEDEDAV 134 A+ ++ R A Q+AGG EA+L+ +SDTYQSD +E++LA LEQR+PDL LECLIAE ED V Sbjct: 76 ASAQMDRMAAQMAGGLEARLTLVMSDTYQSDRYEQTLATLEQRYPDLELECLIAEHEDVV 135 Query: 135 DLVQSGRVQLALVAAQPSYPPDIGFETIADQSEIGLYVSTAHPLAQAA--HISGDMLRQA 192 D++Q GR Q+ LVAAQ +YP DIG+ TIA+QSEIGL+V HPLA+ + +LR+A Sbjct: 136 DIIQLGRAQIGLVAAQAAYPADIGWATIAEQSEIGLFVGLQHPLARYGDEEVPHAILREA 195 Query: 193 RELRVNTYTH----RDQARRQQPGLHWSASSYLILLEMTELGFGWAELPRWVVKRFGAAE 248 RELR+NT+ R A + WSA SYL+LLEM LGFGW ELPRW+V F A Sbjct: 196 RELRLNTFVDPTGPRTDAVPVRSLRRWSAPSYLMLLEMAVLGFGWTELPRWLVDHFAADR 255 Query: 249 LKELKVHGWPRSIRVHVIWSRERGLGQAGAWLCNTFL 285 L E++ GWPR + V +WSR R LGQAGAWL T L Sbjct: 256 LHEVRARGWPRLVPVDAVWSRNRTLGQAGAWLLETML 292 >gb|AEG71109.1| cys regulon transcriptional activator-related protein [Ralstonia solanacearum Po82] Length = 294 Score = 329 bits (844), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 164/277 (59%), Positives = 205/277 (74%), Gaps = 6/277 (2%) Query: 15 NLGSFSAAARKLGRQQSSVSEAIANLEIDLGVTLFDRSTRKPTLTEHGHALLTHARQLLD 74 LGSFSAAARKLG++QS++SEAI NLEIDLG+TLFDR TR+PTLT+ G A+L R++LD Sbjct: 16 TLGSFSAAARKLGKRQSTISEAIGNLEIDLGLTLFDRGTRQPTLTDAGRAMLAQVRRVLD 75 Query: 75 ANDKLSRAAQQLAGGREAQLSFALSDTYQSDVFEKSLAQLEQRFPDLSLECLIAEDEDAV 134 A++++ R A Q+AGG EA+L+ A+SDTYQSD +E++LA LE RFPDL LECLIAE ED V Sbjct: 76 ASEQMDRLATQMAGGLEARLTLAVSDTYQSDRYEQTLAALEARFPDLELECLIAEHEDVV 135 Query: 135 DLVQSGRVQLALVAAQPSYPPDIGFETIADQSEIGLYVSTAHPLAQ--AAHISGDMLRQA 192 L+Q R QL LVA+QP+YPPDIG TI++ SEIGL+V HPLA+ A LR A Sbjct: 136 GLIQQDRAQLGLVASQPAYPPDIGAATISEPSEIGLFVGKQHPLARHGDAETPHAELRAA 195 Query: 193 RELRVNTYTHRDQARRQQPGL----HWSASSYLILLEMTELGFGWAELPRWVVKRFGAAE 248 RELR+NT AR + P + WSA SYL+LLEM LG+GW ELPRW+V+RF A Sbjct: 196 RELRLNTMAAPGGARTEGPDIGSARRWSAPSYLMLLEMAALGYGWTELPRWMVERFSADR 255 Query: 249 LKELKVHGWPRSIRVHVIWSRERGLGQAGAWLCNTFL 285 L E++ GWPR + V +WSR+R LG+AGAWL T L Sbjct: 256 LHEVRARGWPRRVPVDAVWSRKRPLGKAGAWLLETML 292 >emb|CAQ18195.1| hypothetical protein RSMK05042 [Ralstonia solanacearum MolK2] Length = 294 Score = 328 bits (842), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 164/277 (59%), Positives = 205/277 (74%), Gaps = 6/277 (2%) Query: 15 NLGSFSAAARKLGRQQSSVSEAIANLEIDLGVTLFDRSTRKPTLTEHGHALLTHARQLLD 74 LGSFSAAARKLG++QS++SEAI NLEIDLG+TLFDR TR+PTLT+ G A+L R++LD Sbjct: 16 TLGSFSAAARKLGKRQSTISEAIGNLEIDLGLTLFDRGTRQPTLTDAGRAMLAQVRRVLD 75 Query: 75 ANDKLSRAAQQLAGGREAQLSFALSDTYQSDVFEKSLAQLEQRFPDLSLECLIAEDEDAV 134 A++++ R A Q+AGG EA+L+ A+SDTYQSD +E++LA LE RFPDL LECLIAE ED V Sbjct: 76 ASEQMDRLATQMAGGLEARLTLAVSDTYQSDRYEQTLAALEARFPDLELECLIAEHEDVV 135 Query: 135 DLVQSGRVQLALVAAQPSYPPDIGFETIADQSEIGLYVSTAHPLAQ--AAHISGDMLRQA 192 L+Q R QL LVA+QP+YPPDIG TI++ SEIGL+V HPLA+ A LR A Sbjct: 136 GLIQQDRAQLGLVASQPAYPPDIGAATISEPSEIGLFVGRQHPLARHGDAETPHAELRAA 195 Query: 193 RELRVNTYTHRDQARRQQPGL----HWSASSYLILLEMTELGFGWAELPRWVVKRFGAAE 248 RELR+NT AR + P + WSA SYL+LLEM LG+GW ELPRW+V+RF A Sbjct: 196 RELRLNTMAAPGGARTEGPDIGSARRWSAPSYLMLLEMAALGYGWTELPRWMVERFSADR 255 Query: 249 LKELKVHGWPRSIRVHVIWSRERGLGQAGAWLCNTFL 285 L E++ GWPR + V +WSR+R LG+AGAWL T L Sbjct: 256 LHEVRARGWPRRVPVDAVWSRKRPLGKAGAWLLETML 292