BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0130.p (146 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_549525.1| hypothetical protein Bpro_2711 [Polaromonas sp.... 181 3e-44 ref|YP_004752051.1| hypothetical protein CFU_1396 [Collimonas fu... 175 2e-42 ref|ZP_03572587.1| putative membrane protein [Burkholderia multi... 169 1e-40 ref|YP_982766.1| transmembrane pair domain-containing protein [P... 169 2e-40 ref|YP_001579111.1| transmembrane pair domain-containing protein... 168 2e-40 >ref|YP_549525.1| hypothetical protein Bpro_2711 [Polaromonas sp. JS666] gb|ABE44627.1| transmembrane pair [Polaromonas sp. JS666] Length = 177 Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 88/145 (60%), Positives = 111/145 (76%), Gaps = 3/145 (2%) Query: 1 MNQEKSLYERFLHAVLFEIVALLLCAPVMSWLLGVSFAHAGALTLMISLVAMTWNVIFNT 60 M+ +KS+ ERF HA+ FE+VA+ +CAP+ +WLLG S AH G LTLMISL+AMTWN+ FN Sbjct: 31 MSLQKSVKERFFHALGFEVVAIAICAPLGTWLLGYSLAHMGLLTLMISLIAMTWNMTFNA 90 Query: 61 VFDRLERRWKAPAAERSFAVRIGHAIVFEAGLILAVVPLAAWWLNIGLIEAFVLDIGLVL 120 +FDR +RRW R+ R H+++FE GLI+AVVPLAAWWL+IGL EAFVLDIG+VL Sbjct: 91 LFDRAQRRW---GFRRTLLARGVHSVLFETGLIVAVVPLAAWWLDIGLWEAFVLDIGIVL 147 Query: 121 FFLPYTLVFNWCYDKMRAGMLRRAT 145 FFLPYT FNW YD +RA ++ R Sbjct: 148 FFLPYTFAFNWIYDHLRAVVIARKN 172 >ref|YP_004752051.1| hypothetical protein CFU_1396 [Collimonas fungivorans Ter331] gb|AEK61228.1| hypothetical protein CFU_1396 [Collimonas fungivorans Ter331] Length = 146 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 83/143 (58%), Positives = 113/143 (79%), Gaps = 3/143 (2%) Query: 1 MNQEKSLYERFLHAVLFEIVALLLCAPVMSWLLGVSFAHAGALTLMISLVAMTWNVIFNT 60 MN K+ ER +HA++FE++A+ L APV+SW++ + AHAG LTLMISLVAMTWN+IFN+ Sbjct: 1 MNANKTWRERAVHALIFEVLAVALTAPVLSWVMKMPMAHAGLLTLMISLVAMTWNMIFNS 60 Query: 61 VFDRLERRWKAPAAERSFAVRIGHAIVFEAGLILAVVPLAAWWLNIGLIEAFVLDIGLVL 120 +FDR+ER W+ R+ A+R+ HA FEAGL+ VVPL AWWL++ L++A +LDIGL+L Sbjct: 61 LFDRIERHWR---LVRTMAMRMVHATAFEAGLVAIVVPLVAWWLDMSLLDALILDIGLLL 117 Query: 121 FFLPYTLVFNWCYDKMRAGMLRR 143 FFLPYT VFN YDK+RA +L++ Sbjct: 118 FFLPYTFVFNLAYDKLRATLLKK 140 >ref|ZP_03572587.1| putative membrane protein [Burkholderia multivorans CGD2M] ref|ZP_03578572.1| putative membrane protein [Burkholderia multivorans CGD2] gb|EEE06827.1| putative membrane protein [Burkholderia multivorans CGD2] gb|EEE13231.1| putative membrane protein [Burkholderia multivorans CGD2M] Length = 148 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 81/137 (59%), Positives = 102/137 (74%), Gaps = 3/137 (2%) Query: 2 NQEKSLYERFLHAVLFEIVALLLCAPVMSWLLGVSFAHAGALTLMISLVAMTWNVIFNTV 61 K++ ER +HA+ FE+VA+ LCAP+ +WLL + AH G LT+M+SLVAM WN+IFNT+ Sbjct: 3 QTNKTVMERLVHALTFELVAIALCAPIGAWLLDMPVAHVGVLTVMVSLVAMAWNMIFNTL 62 Query: 62 FDRLERRWKAPAAERSFAVRIGHAIVFEAGLILAVVPLAAWWLNIGLIEAFVLDIGLVLF 121 FDR ERR R+ VRI HA+ FEAGL+ VVPLAAWWLN+ LIEA +LD+G+VLF Sbjct: 63 FDRFERR---AGLSRTIGVRIAHAVGFEAGLVAMVVPLAAWWLNVSLIEALLLDLGIVLF 119 Query: 122 FLPYTLVFNWCYDKMRA 138 FLPYT FN YD +RA Sbjct: 120 FLPYTFCFNLAYDALRA 136 >ref|YP_982766.1| transmembrane pair domain-containing protein [Polaromonas naphthalenivorans CJ2] gb|ABM37845.1| transmembrane pair domain protein [Polaromonas naphthalenivorans CJ2] Length = 149 Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 82/140 (58%), Positives = 104/140 (74%), Gaps = 3/140 (2%) Query: 4 EKSLYERFLHAVLFEIVALLLCAPVMSWLLGVSFAHAGALTLMISLVAMTWNVIFNTVFD 63 KS ERF A+ FE++A+ +CAP+ +WL+G S H G LTLMISL+AM+WN++FN VFD Sbjct: 6 HKSATERFFQALAFEVLAVAICAPLGAWLMGYSLGHIGVLTLMISLIAMSWNMLFNLVFD 65 Query: 64 RLERRWKAPAAERSFAVRIGHAIVFEAGLILAVVPLAAWWLNIGLIEAFVLDIGLVLFFL 123 R +RR +R+ A R HA++FE GL+LAVVPLAAWWL+IGL EA VLDIG+ LFFL Sbjct: 66 RAQRR---MGFDRTLAARAVHAVMFEVGLVLAVVPLAAWWLDIGLWEALVLDIGIALFFL 122 Query: 124 PYTLVFNWCYDKMRAGMLRR 143 PYT FNW YD +RA + R Sbjct: 123 PYTFAFNWTYDHLRARFIAR 142 >ref|YP_001579111.1| transmembrane pair domain-containing protein [Burkholderia multivorans ATCC 17616] ref|YP_001946772.1| hypothetical protein BMULJ_02341 [Burkholderia multivorans ATCC 17616] gb|ABX14614.1| transmembrane pair domain protein [Burkholderia multivorans ATCC 17616] dbj|BAG44236.1| predicted membrane protein [Burkholderia multivorans ATCC 17616] Length = 148 Score = 168 bits (426), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 80/137 (58%), Positives = 102/137 (74%), Gaps = 3/137 (2%) Query: 2 NQEKSLYERFLHAVLFEIVALLLCAPVMSWLLGVSFAHAGALTLMISLVAMTWNVIFNTV 61 K++ ER +HA+ FE+VA+ LCAP+ +WLL + AH G LT+M+SL+AM WN+IFNT+ Sbjct: 3 QTNKTMMERLVHALTFELVAIALCAPIGAWLLDMPVAHVGVLTVMVSLIAMAWNMIFNTL 62 Query: 62 FDRLERRWKAPAAERSFAVRIGHAIVFEAGLILAVVPLAAWWLNIGLIEAFVLDIGLVLF 121 FDR ERR R+ VRI HA+ FEAGL+ VVPLAAWWLN+ LIEA +LD+G+VLF Sbjct: 63 FDRFERR---AGLSRTIGVRIAHALGFEAGLVAMVVPLAAWWLNVSLIEALLLDLGIVLF 119 Query: 122 FLPYTLVFNWCYDKMRA 138 FLPYT FN YD +RA Sbjct: 120 FLPYTFCFNLAYDALRA 136