BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0116.p (257 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003982009.1| receptor family ligand binding region family... 378 e-103 ref|ZP_06689156.1| ABC superfamily ATP binding cassette transpor... 353 2e-95 ref|YP_001416466.1| extracellular ligand-binding receptor [Xanth... 311 7e-83 ref|YP_001416465.1| extracellular ligand-binding receptor [Xanth... 300 1e-79 ref|YP_002953642.1| ABC transporter substrate binding protein pr... 166 3e-39 >ref|YP_003982009.1| receptor family ligand binding region family protein 28 [Achromobacter xylosoxidans A8] gb|ADP19294.1| receptor family ligand binding region family protein 28 [Achromobacter xylosoxidans A8] Length = 405 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/239 (75%), Positives = 215/239 (89%) Query: 7 ALPTLSLAQQKTINVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGAKIKLI 66 +LP +LA INVGVILPLSGANAQFGINSRQG+EL ADEINAAGGIK++GGA++KLI Sbjct: 27 SLPGRALAAPSEINVGVILPLSGANAQFGINSRQGLELAADEINAAGGIKAMGGARLKLI 86 Query: 67 VADSTSAATTAATVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLTMSFSDQIT 126 +AD+TS TTAATVAQRLITQN CVAI+GA+ASSLTLAISEVTERRG+PLLTMSFSD +T Sbjct: 87 IADATSQPTTAATVAQRLITQNRCVAIIGAYASSLTLAISEVTERRGIPLLTMSFSDVLT 146 Query: 127 GRGFKNVFQVVSKGSLIGKCQFDYAVALASGNQKVNKIAIVYEDTAYGTSQATGLRDAAK 186 RGFK++FQVVSKGS++G+ Q+DYA ++ +G +NKIA++YEDTAYGTSQA G+R+AAK Sbjct: 147 ERGFKHIFQVVSKGSVLGRAQYDYAASVVAGASDINKIALLYEDTAYGTSQAVGVRNAAK 206 Query: 187 AAKTEIVMDEAYPLGISDVTPLINKLRNSGAQIVFPVSYLNDSLLIIRTMRQQKIDMPI 245 AA T+IV+DEAYPLGI+DVTPLI+KLR S AQIVFP+SYLNDSLLIIR MRQQ++ +PI Sbjct: 207 AAGTQIVLDEAYPLGITDVTPLISKLRGSDAQIVFPISYLNDSLLIIRVMRQQRLTVPI 265 >ref|ZP_06689156.1| ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] gb|EFF73939.1| ABC superfamily ATP binding cassette transporter, binding protein [Achromobacter piechaudii ATCC 43553] Length = 406 Score = 353 bits (905), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 174/227 (76%), Positives = 206/227 (90%) Query: 19 INVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGAKIKLIVADSTSAATTAA 78 INVGVILPLSGANAQFGINSRQG+EL ADEINAAGGIKSLGGAK+KLIVAD+TS TTAA Sbjct: 40 INVGVILPLSGANAQFGINSRQGLELAADEINAAGGIKSLGGAKLKLIVADATSQPTTAA 99 Query: 79 TVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLTMSFSDQITGRGFKNVFQVVS 138 TVAQRLITQN CVA++GA+ASSLTLA+SEVTERRG+PLLTMSFS+ +T RGFK++FQVVS Sbjct: 100 TVAQRLITQNRCVALIGAYASSLTLAVSEVTERRGIPLLTMSFSNVLTERGFKHIFQVVS 159 Query: 139 KGSLIGKCQFDYAVALASGNQKVNKIAIVYEDTAYGTSQATGLRDAAKAAKTEIVMDEAY 198 KGS++G+ Q+DYA ++ +G + KIA++YEDTAYGTSQA G+R+AAKAA +I +DEAY Sbjct: 160 KGSVLGRAQYDYAASVVAGASDIKKIALLYEDTAYGTSQAVGVRNAAKAAGAQIALDEAY 219 Query: 199 PLGISDVTPLINKLRNSGAQIVFPVSYLNDSLLIIRTMRQQKIDMPI 245 PLGI+DVTPLI+KLR S AQIVFP+SYLNDSLLIIR MRQQ++ +PI Sbjct: 220 PLGITDVTPLISKLRASDAQIVFPISYLNDSLLIIRVMRQQRLTVPI 266 >ref|YP_001416466.1| extracellular ligand-binding receptor [Xanthobacter autotrophicus Py2] gb|ABS66809.1| Extracellular ligand-binding receptor [Xanthobacter autotrophicus Py2] Length = 406 Score = 311 bits (797), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 153/226 (67%), Positives = 186/226 (82%), Gaps = 2/226 (0%) Query: 21 VGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGAKIKLIVADSTSAATTAATV 80 VGVI PLSG NAQFGI +++G EL A+ INAAGGIKSLGGAKIKL+ AD + T AAT Sbjct: 38 VGVIQPLSGPNAQFGIGAQRGTELAAEMINAAGGIKSLGGAKIKLVAADVPTPNTAAATT 97 Query: 81 AQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLTMSFSDQITGRGFKNVFQVVSKG 140 QRLI+QN A++GAF SS TLA SEVTER G+PL+T +F+DQITGRG++ VFQV KG Sbjct: 98 -QRLISQNGVSAVVGAFVSSTTLAASEVTERAGIPLVTFAFADQITGRGYQYVFQVSPKG 156 Query: 141 SLIGKCQFDYAVALA-SGNQKVNKIAIVYEDTAYGTSQATGLRDAAKAAKTEIVMDEAYP 199 ++ G QFDYA +A + +K++KIAI+YEDTAYGT+QA GLRDAAK A EIV+DEAYP Sbjct: 157 TVFGAAQFDYATEIAKAAGEKIDKIAILYEDTAYGTAQAKGLRDAAKKAGVEIVLDEAYP 216 Query: 200 LGISDVTPLINKLRNSGAQIVFPVSYLNDSLLIIRTMRQQKIDMPI 245 LGI+DV+PL+NKLR SGAQ+ FPVSYLNDSLLIIR +RQQ+ID+P+ Sbjct: 217 LGITDVSPLVNKLRASGAQMAFPVSYLNDSLLIIRALRQQQIDIPV 262 >ref|YP_001416465.1| extracellular ligand-binding receptor [Xanthobacter autotrophicus Py2] gb|ABS66808.1| Extracellular ligand-binding receptor [Xanthobacter autotrophicus Py2] Length = 402 Score = 300 bits (768), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 147/230 (63%), Positives = 180/230 (78%), Gaps = 2/230 (0%) Query: 16 QKTINVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGAKIKLIVADSTSAAT 75 Q + +GV+LPLSG NAQFGINSR GIE+ A+ INAAGGI SLGGAKI+L+VAD S Sbjct: 28 QAPVKIGVVLPLSGPNAQFGINSRAGIEMAAEAINAAGGIASLGGAKIELVVADVPSP-N 86 Query: 76 TAATVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLTMSFSDQITGRGFKNVFQ 135 TAA QRL++Q++ V ++GAF SS+TLA SEVTER G+P++T SF+DQIT RG+K +FQ Sbjct: 87 TAAAATQRLVSQDQVVGVVGAFVSSITLAASEVTERAGIPMITHSFADQITARGYKYIFQ 146 Query: 136 VVSKGSLIGKCQFDYAVALAS-GNQKVNKIAIVYEDTAYGTSQATGLRDAAKAAKTEIVM 194 V +K + GK Q DYA+ALA K+AI YEDTAYGT+QA GLR+AAKAA V+ Sbjct: 147 VSAKATTYGKAQLDYAIALAKQAGAPFEKVAIFYEDTAYGTAQAKGLREAAKAAGITPVI 206 Query: 195 DEAYPLGISDVTPLINKLRNSGAQIVFPVSYLNDSLLIIRTMRQQKIDMP 244 DEAYPLGI+DV PLINKLR++ A IVFPVSY ND+L IIR MRQQ+ID+P Sbjct: 207 DEAYPLGITDVAPLINKLRSAKADIVFPVSYFNDALQIIRAMRQQQIDIP 256 >ref|YP_002953642.1| ABC transporter substrate binding protein precursor [Desulfovibrio magneticus RS-1] dbj|BAH75756.1| ABC transporter substrate binding protein precursor [Desulfovibrio magneticus RS-1] Length = 415 Score = 166 bits (421), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 89/228 (39%), Positives = 137/228 (60%), Gaps = 2/228 (0%) Query: 16 QKTINVGVILPLSGANAQFGINSRQGIELVADEINAAGGIKSLGGAKIKLIVADSTSAAT 75 KT+ +G + PLSG +A G+ +Q E+ +EINAAGGIKSLGGAK++L+ ADS S T Sbjct: 31 DKTVKIGNVEPLSGPSASVGVQGKQAREMAIEEINAAGGIKSLGGAKLELVYADSKSDPT 90 Query: 76 TAATVAQRLITQNECVAILGAFASSLTLAISEVTERRGVPLLT-MSFSDQITGRGFKNVF 134 T +RLI + + G + S++T ++V ER G+P + ++ D IT RGFKNVF Sbjct: 91 VGVTETERLINTEKVNLMTGCWNSAVTYPATQVAERYGIPFVVPVAVRDTITERGFKNVF 150 Query: 135 QVVSKGSLIGKCQFDYAVALASGNQ-KVNKIAIVYEDTAYGTSQATGLRDAAKAAKTEIV 193 ++ +K S + QF + + K+ KIA V+E+ +GT A R+ AK E+V Sbjct: 151 RIAAKDSWWVRDQFRFLKDMQEETGVKLQKIAFVFENGDWGTGFAEKWRELAKKDGYEVV 210 Query: 194 MDEAYPLGISDVTPLINKLRNSGAQIVFPVSYLNDSLLIIRTMRQQKI 241 +DE YP +D+TP++ KL+ + IV VS D++L+ TM + ++ Sbjct: 211 LDEPYPSTATDLTPVVTKLKAAKPDIVMLVSNAADAILLTNTMAEMQV 258