BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0107.p (340 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system ... 495 e-138 ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, ... 484 e-135 ref|YP_001231531.1| TRAP dicarboxylate transporter subunit DctP ... 454 e-126 ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasm... 453 e-125 ref|YP_420258.1| TRAP-type C4-dicarboxylate transport system [Ma... 450 e-124 >ref|YP_003774270.1| TRAP-type C4-dicarboxylate transport system periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ62362.1| TRAP-type C4-dicarboxylate transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 334 Score = 495 bits (1274), Expect = e-138, Method: Compositional matrix adjust. Identities = 231/309 (74%), Positives = 271/309 (87%) Query: 26 LAQAPIVIKFSHVVAINTPKGKAAERFKELAEKATHGRVKVEVYPNSILYKDKEEMEALQ 85 AQ PIVIKFSHVVA +TPKGKAAERFKELAEKAT GRVK+EVYPNS LYKDKEE+EALQ Sbjct: 21 FAQQPIVIKFSHVVANDTPKGKAAERFKELAEKATKGRVKIEVYPNSTLYKDKEELEALQ 80 Query: 86 IGAVQILAPSLAKFGPLGVKEFEVFDLPYIFPTVTALHSVTQGAVGQQMFKKLEPKGITG 145 +GAVQ+LAPSLAKFGPLGVKEFEVFDLPYIFPT L+ VT+G +G+ +FKKLEPKGITG Sbjct: 81 LGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPTKEVLYRVTEGPIGKDLFKKLEPKGITG 140 Query: 146 LAYWDNGFKVMSANKILKSAADFKGLKLRIQSSKVLDAQMRTLGANPQMLAFSEVYQALQ 205 LAYWDNGFKVMSANK L ADF+GLK+RIQSSKVLDAQMR LGANPQ+LAFSEVYQALQ Sbjct: 141 LAYWDNGFKVMSANKPLHHPADFRGLKMRIQSSKVLDAQMRALGANPQVLAFSEVYQALQ 200 Query: 206 TGVVDGAENPPSNIYSQKMHEVQKYISVTNHGVIEYAVITNTKFWNSLPADIRGTLEIAL 265 TGVVDG ENPPSN+Y+QKMHEVQK+++V+NHG + YAVI N KFW+ LP+DIR LE A+ Sbjct: 201 TGVVDGTENPPSNLYTQKMHEVQKHVTVSNHGYLGYAVIVNKKFWDGLPSDIRTQLEGAM 260 Query: 266 KEATAYGNSIAQKENDDAIEAMRQSSKTSIYVLTDAERAALRKTLLPVQKEVAGRIGKEL 325 K+AT Y N+IAQ+END A+ A+ ++ KT++Y LTDAE+A RK LLPVQ+++A RIGK+L Sbjct: 261 KDATKYANAIAQQENDAALAAVEKTGKTTVYRLTDAEKAEWRKALLPVQQQMASRIGKDL 320 Query: 326 IDSINQTVA 334 ID++N+ A Sbjct: 321 IDAVNKESA 329 >ref|ZP_08274273.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Oxalobacteraceae bacterium IMCC9480] gb|EGF32246.1| TRAP-type C4-dicarboxylate transport system, periplasmic component [Oxalobacteraceae bacterium IMCC9480] Length = 337 Score = 484 bits (1246), Expect = e-135, Method: Compositional matrix adjust. Identities = 229/323 (70%), Positives = 270/323 (83%) Query: 9 TLASLGTVGMLTSAPGVLAQAPIVIKFSHVVAINTPKGKAAERFKELAEKATHGRVKVEV 68 TL++L L + +AQ PIVIKFSHVVA +TPKGKAAERFKEL EK GRVKVE+ Sbjct: 7 TLSTLAMSAALLMSGNAMAQTPIVIKFSHVVANDTPKGKAAERFKELVEKNLKGRVKVEL 66 Query: 69 YPNSILYKDKEEMEALQIGAVQILAPSLAKFGPLGVKEFEVFDLPYIFPTVTALHSVTQG 128 YPNS LYKDKEE+EALQ+GAVQ+LAPSLAKFGPLGVKEFE+FDLPYIFP L+ VT+G Sbjct: 67 YPNSTLYKDKEELEALQLGAVQMLAPSLAKFGPLGVKEFELFDLPYIFPGKDVLYRVTEG 126 Query: 129 AVGQQMFKKLEPKGITGLAYWDNGFKVMSANKILKSAADFKGLKLRIQSSKVLDAQMRTL 188 +G+ +FKKLE KGITGLAYWDNGFKVMSANK LK+ ADFKGLK+RIQSSKVLDA+MR L Sbjct: 127 PIGKDLFKKLESKGITGLAYWDNGFKVMSANKPLKTPADFKGLKMRIQSSKVLDAEMRAL 186 Query: 189 GANPQMLAFSEVYQALQTGVVDGAENPPSNIYSQKMHEVQKYISVTNHGVIEYAVITNTK 248 GANPQ+LAFSEVYQALQTGVVDG ENPPSN+Y+QKMHEVQ ++V+NHG + YAVI N K Sbjct: 187 GANPQVLAFSEVYQALQTGVVDGTENPPSNLYTQKMHEVQSNVTVSNHGYLGYAVIVNKK 246 Query: 249 FWNSLPADIRGTLEIALKEATAYGNSIAQKENDDAIEAMRQSSKTSIYVLTDAERAALRK 308 FW+ LPADIR LE A+K+AT Y N+IAQ+END A+EA+R+S KT +YVL D E+A RK Sbjct: 247 FWDGLPADIRTGLEAAMKDATKYANAIAQQENDKAMEAVRKSGKTEVYVLNDKEKAEWRK 306 Query: 309 TLLPVQKEVAGRIGKELIDSINQ 331 LLPVQK++ RIGK+LI ++ + Sbjct: 307 ALLPVQKDMESRIGKDLITAVGK 329 >ref|YP_001231531.1| TRAP dicarboxylate transporter subunit DctP [Geobacter uraniireducens Rf4] gb|ABQ26958.1| TRAP dicarboxylate transporter, DctP subunit [Geobacter uraniireducens Rf4] Length = 331 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 216/320 (67%), Positives = 263/320 (82%) Query: 10 LASLGTVGMLTSAPGVLAQAPIVIKFSHVVAINTPKGKAAERFKELAEKATHGRVKVEVY 69 L +L T +LT+ APIVIKFSHVVA +TPKG+AA+ FK+LAE+ T GRVKVEVY Sbjct: 3 LKALLTFALLTAFSSTALAAPIVIKFSHVVAQHTPKGQAADYFKKLAEERTKGRVKVEVY 62 Query: 70 PNSILYKDKEEMEALQIGAVQILAPSLAKFGPLGVKEFEVFDLPYIFPTVTALHSVTQGA 129 PNS LYKDKEEMEALQ+GAVQ+LAPSLAKF PLGVK+FEVFDLP+IF T LH VTQG Sbjct: 63 PNSQLYKDKEEMEALQLGAVQMLAPSLAKFAPLGVKDFEVFDLPFIFDNYTELHKVTQGP 122 Query: 130 VGQQMFKKLEPKGITGLAYWDNGFKVMSANKILKSAADFKGLKLRIQSSKVLDAQMRTLG 189 VGQ++ KKLEPKGI GL+YWDNGFKVMSANK LK+ ADFKG KLRIQSSKVLD+QMR++G Sbjct: 123 VGQKLLKKLEPKGIIGLSYWDNGFKVMSANKPLKTPADFKGQKLRIQSSKVLDSQMRSVG 182 Query: 190 ANPQMLAFSEVYQALQTGVVDGAENPPSNIYSQKMHEVQKYISVTNHGVIEYAVITNTKF 249 ANPQ+LAFSEVYQALQTGVV+G ENPPSN+Y+QKMHEVQKY+++++HG + YAVI N KF Sbjct: 183 ANPQVLAFSEVYQALQTGVVNGTENPPSNLYTQKMHEVQKYVTLSDHGYLGYAVIVNKKF 242 Query: 250 WNSLPADIRGTLEIALKEATAYGNSIAQKENDDAIEAMRQSSKTSIYVLTDAERAALRKT 309 WN LPADIR LE A+K+AT Y N IA+K+ND+A+ A+++S ++ + LT ERAA +K+ Sbjct: 243 WNGLPADIRTILEGAMKDATKYANEIAKKDNDEALAAVKKSGRSQLIALTPQERAAWKKS 302 Query: 310 LLPVQKEVAGRIGKELIDSI 329 + KE GRIG +L+ + Sbjct: 303 MDKAHKEHTGRIGADLVKEV 322 >ref|YP_003776197.1| TRAP-type C4-dicarboxylate-binding periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ64289.1| TRAP-type C4-dicarboxylate-binding periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 344 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 217/332 (65%), Positives = 261/332 (78%), Gaps = 3/332 (0%) Query: 1 MHINKIVATLASLGTVGMLTSAPGVLAQAP---IVIKFSHVVAINTPKGKAAERFKELAE 57 M I + LA+ V + P LAQ P I+IKFSHVVA +TPKGK AERFKELAE Sbjct: 1 MTILPLRTALAACAFVTLGLPQPAALAQQPQQPIIIKFSHVVANDTPKGKGAERFKELAE 60 Query: 58 KATHGRVKVEVYPNSILYKDKEEMEALQIGAVQILAPSLAKFGPLGVKEFEVFDLPYIFP 117 KAT GRVKVEVYPNS LYKDKEE+EALQ+G+VQ+LAPSLAKFGPLG +EFEVFDLPYIFP Sbjct: 61 KATQGRVKVEVYPNSTLYKDKEELEALQLGSVQMLAPSLAKFGPLGAREFEVFDLPYIFP 120 Query: 118 TVTALHSVTQGAVGQQMFKKLEPKGITGLAYWDNGFKVMSANKILKSAADFKGLKLRIQS 177 L VT+G +GQ +F+KLE KGI GLAYWDNG KVM+AN+ L ADF+ LK+RIQS Sbjct: 121 DKAVLKRVTEGPIGQGLFQKLEGKGIKGLAYWDNGMKVMTANRPLHKVADFRALKMRIQS 180 Query: 178 SKVLDAQMRTLGANPQMLAFSEVYQALQTGVVDGAENPPSNIYSQKMHEVQKYISVTNHG 237 SKVLD Q R L ANPQ+LAFSEVYQA+QTGVVDG+EN PSN+Y+QKMHEVQ ++V++HG Sbjct: 181 SKVLDEQFRALKANPQVLAFSEVYQAMQTGVVDGSENTPSNVYTQKMHEVQSNLTVSDHG 240 Query: 238 VIEYAVITNTKFWNSLPADIRGTLEIALKEATAYGNSIAQKENDDAIEAMRQSSKTSIYV 297 I YAVI N KFW +LPADIR LE A+K+AT Y N+IAQKENDDA+ A++ S KT +Y Sbjct: 241 YIGYAVIVNKKFWEALPADIRSQLEAAMKQATLYANTIAQKENDDALAAIKASGKTRVYT 300 Query: 298 LTDAERAALRKTLLPVQKEVAGRIGKELIDSI 329 L++ E+A R+ LLPV K +A R+G +LI++I Sbjct: 301 LSEQEKAEWRRALLPVHKSMAARVGADLIEAI 332 >ref|YP_420258.1| TRAP-type C4-dicarboxylate transport system [Magnetospirillum magneticum AMB-1] dbj|BAE49699.1| TRAP-type C4-dicarboxylate transport system [Magnetospirillum magneticum AMB-1] Length = 337 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 219/324 (67%), Positives = 259/324 (79%), Gaps = 2/324 (0%) Query: 14 GTVGMLTSAPGVLAQA--PIVIKFSHVVAINTPKGKAAERFKELAEKATHGRVKVEVYPN 71 G + A +AQ PIVIKFSHVVA +TPKGK AE FK+LAE+ T GRVKVEVYPN Sbjct: 9 GAIAACVLAGSAMAQQAQPIVIKFSHVVAPDTPKGKGAEYFKKLAEERTKGRVKVEVYPN 68 Query: 72 SILYKDKEEMEALQIGAVQILAPSLAKFGPLGVKEFEVFDLPYIFPTVTALHSVTQGAVG 131 S LYKDKEEMEALQ+GAVQ+LAPSLAKFGPLGVKEFEVFDLPYIFP+ L SVT G VG Sbjct: 69 SQLYKDKEEMEALQLGAVQMLAPSLAKFGPLGVKEFEVFDLPYIFPSKDVLRSVTGGPVG 128 Query: 132 QQMFKKLEPKGITGLAYWDNGFKVMSANKILKSAADFKGLKLRIQSSKVLDAQMRTLGAN 191 + KKLE KGI GLAYWDNGFK+MSANK +K+ +D KG+K+RIQSSKVLDA+MR LGA Sbjct: 129 ASLLKKLEGKGIIGLAYWDNGFKIMSANKPIKAPSDLKGVKMRIQSSKVLDAEMRALGAL 188 Query: 192 PQMLAFSEVYQALQTGVVDGAENPPSNIYSQKMHEVQKYISVTNHGVIEYAVITNTKFWN 251 PQ++AFSEVYQALQTGVVDG ENPPSN+Y+QKMHEVQK+ ++TNHG + YAVI N KFW Sbjct: 189 PQVMAFSEVYQALQTGVVDGTENPPSNMYTQKMHEVQKHATMTNHGYLGYAVIVNKKFWE 248 Query: 252 SLPADIRGTLEIALKEATAYGNSIAQKENDDAIEAMRQSSKTSIYVLTDAERAALRKTLL 311 LPADIR TLE A+ EA+ + N+IAQ ENDDA++AM+ S KT + + AE A RK LL Sbjct: 249 GLPADIRATLEGAMSEASVFANAIAQTENDDAVKAMKASGKTEFHDPSAAEIEAWRKALL 308 Query: 312 PVQKEVAGRIGKELIDSINQTVAQ 335 PV K++ GR+GK+LI+S + A+ Sbjct: 309 PVHKDMEGRVGKDLIESFYKEAAK 332