BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0104.p (433 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06690075.1| ABC superfamily ATP binding cassette transpor... 514 e-143 ref|YP_001416257.1| extracellular ligand-binding receptor [Xanth... 509 e-142 ref|YP_004416753.1| extracellular ligand-binding receptor [Pusil... 499 e-139 ref|ZP_01035722.1| ABC-type transport system periplasmic substra... 483 e-134 ref|YP_003694826.1| extracellular ligand-binding receptor [Stark... 479 e-133 >ref|ZP_06690075.1| ABC superfamily ATP binding cassette transporter periplasmic substrate-binding protein [Achromobacter piechaudii ATCC 43553] gb|EFF73032.1| ABC superfamily ATP binding cassette transporter periplasmic substrate-binding protein [Achromobacter piechaudii ATCC 43553] Length = 434 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 245/408 (60%), Positives = 308/408 (75%), Gaps = 3/408 (0%) Query: 23 NKPAEIKLGIGTFLSGPASVFGVPAKNGAEMFINDLNAAGGIHGVKLTPTFIDEGIGGDK 82 +KP E+ +GI TFLSG ASVFGVPA++ AE+ I D+NAAGGI GVKL P++IDEG GG+K Sbjct: 26 DKPKELNIGISTFLSGSASVFGVPARDAAEILIQDINAAGGIDGVKLVPSYIDEGGGGEK 85 Query: 83 FLSEYRRLIQEQNTKLMLVGVSSGDCKTVAPVAEDLKILNVMWDCSTEKILEDNRYRYVV 142 LSEYRRL E T++ML +SSG C VAPVAEDLK+LNV+WDC TEK LE +Y+YVV Sbjct: 86 LLSEYRRL-AEGGTRVMLSAISSGHCNIVAPVAEDLKVLNVLWDCGTEKALEGKKYKYVV 144 Query: 143 RTSADANTEMVAAVLYLLRTKPDFKTLAVINQDYAWGRDSWELFRNTLLALKPDTKIVAE 202 RT A+A TEMVA VLYL++ KPDFKT+A++NQDYAWGRDS ++F L KPD K+VAE Sbjct: 145 RTQANATTEMVAQVLYLMKVKPDFKTIAIVNQDYAWGRDSRDIFLAALKKFKPDVKVVAE 204 Query: 203 LFPKLGATDFSTEISRLQALRPDVVLSTSWGGDLDTLVRQAAQRGLLKSSQFILPLGESS 262 +FPK GA DFSTEISRLQALRPDV++STSWGGDLD VRQA+QR L K+S F+L L ESS Sbjct: 205 MFPKFGAADFSTEISRLQALRPDVIVSTSWGGDLDNFVRQASQRNLFKNSTFVLSLAESS 264 Query: 263 LERLGDTLPDGVIIGALGDHYYQHPEYKDDAKMKNFVQKFKAKTGAYPSYPVFRVVSGLE 322 LERLG+ LP+GV +GA GDHY+ HPE +DD + + FV+KF KTGAYP Y V+ +V ++ Sbjct: 265 LERLGNALPEGVYVGARGDHYFLHPETRDDPQHQAFVKKFHDKTGAYPIYSVYHMVQAIQ 324 Query: 323 AVVAGYDKAIKANKGQWPTTEQLADAMHGLEFRALTRPVKI-RADGRALQDQLFGVTKKV 381 + AGY+KAIK N G WPT EQ+A AMH + F+ R VK+ RADG+ L+ QLFGVTKK Sbjct: 325 GLKAGYEKAIKDNGGAWPTPEQVAAAMHDVTFKGYGRDVKMHRADGQGLEAQLFGVTKKS 384 Query: 382 KGTPFSLIDKIVLYPAAPITAPTGQKSVEWV-KTLKPEIMKDPGIKAF 428 PF ++ I + PA +T S+ W+ K+L P+++K IK + Sbjct: 385 DKYPFKVLADITIVPAELVTPGVEDTSMGWIEKSLTPDVLKSDQIKVY 432 >ref|YP_001416257.1| extracellular ligand-binding receptor [Xanthobacter autotrophicus Py2] gb|ABS66600.1| Extracellular ligand-binding receptor [Xanthobacter autotrophicus Py2] Length = 432 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 239/421 (56%), Positives = 308/421 (73%), Gaps = 1/421 (0%) Query: 1 VLSKLLVAAASALLLSGVQA-QTNKPAEIKLGIGTFLSGPASVFGVPAKNGAEMFINDLN 59 +L + LVAAA LL A KPAE+K+GI T+ SG ASVFG+PA++ AEM D+N Sbjct: 1 MLLRRLVAAAGLSLLGLCPALAQQKPAELKIGITTYSSGAASVFGIPARDAAEMLAADIN 60 Query: 60 AAGGIHGVKLTPTFIDEGIGGDKFLSEYRRLIQEQNTKLMLVGVSSGDCKTVAPVAEDLK 119 A GG+ GV + F+DEG G + ++EYRRL+++ +M +SSG C +AP+AEDLK Sbjct: 61 AKGGVQGVPVKLFFVDEGAGIETLMTEYRRLVEDTKVDVMFASISSGVCNKIAPLAEDLK 120 Query: 120 ILNVMWDCSTEKILEDNRYRYVVRTSADANTEMVAAVLYLLRTKPDFKTLAVINQDYAWG 179 +LN MWDC T++ILE+++Y YV RT A+A E++A +LYLL+TKPDFKT+AV+NQDYAWG Sbjct: 121 VLNFMWDCGTQRILEEDKYNYVFRTQANATPEVLAPLLYLLKTKPDFKTIAVVNQDYAWG 180 Query: 180 RDSWELFRNTLLALKPDTKIVAELFPKLGATDFSTEISRLQALRPDVVLSTSWGGDLDTL 239 RDSW +F L LKPD K+VAE FPK GA DFSTE+SRL AL+PDV+LSTSWGGDLDT Sbjct: 181 RDSWAIFSQALKVLKPDVKVVAEFFPKFGAADFSTEVSRLLALKPDVILSTSWGGDLDTF 240 Query: 240 VRQAAQRGLLKSSQFILPLGESSLERLGDTLPDGVIIGALGDHYYQHPEYKDDAKMKNFV 299 VRQA QRGL KSS F+LPL ESSL+RLG LP+GVI+G GDHY+ HPE DAK K F+ Sbjct: 241 VRQANQRGLFKSSLFVLPLAESSLQRLGTDLPEGVIVGGRGDHYFLHPERIGDAKFKAFM 300 Query: 300 QKFKAKTGAYPSYPVFRVVSGLEAVVAGYDKAIKANKGQWPTTEQLADAMHGLEFRALTR 359 FK KTG+YP YPVF + A+ A Y KA+ AN G+WP+ +Q+A AM GL F+AL R Sbjct: 301 DAFKQKTGSYPIYPVFHMAQAFAALEAVYGKAVAANGGKWPSHDQVAKAMPGLTFQALGR 360 Query: 360 PVKIRADGRALQDQLFGVTKKVKGTPFSLIDKIVLYPAAPITAPTGQKSVEWVKTLKPEI 419 PV+IRADG+ ++DQL G T +V F ++D ++++PA + P GQKS W+ TLKP I Sbjct: 361 PVEIRADGQGVEDQLIGTTTRVPAYSFDILDNMMIFPAVQLMPPVGQKSEAWIATLKPGI 420 Query: 420 M 420 + Sbjct: 421 V 421 >ref|YP_004416753.1| extracellular ligand-binding receptor [Pusillimonas sp. T7-7] gb|AEC20129.1| extracellular ligand-binding receptor [Pusillimonas sp. T7-7] Length = 433 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 241/430 (56%), Positives = 308/430 (71%), Gaps = 8/430 (1%) Query: 1 VLSKLLVAAASALLLSGVQAQTNKPAEIKLGIGTFLSGPASVFGVPAKNGAEMFINDLNA 60 +++ +++AA S +L+ KPAE+ +GI T+LSG ASVFG+P K A++ + DLNA Sbjct: 10 LVAAMMLAAGSTAVLAA-----EKPAELNVGISTYLSGSASVFGIPGKEAADILVADLNA 64 Query: 61 AGGIHGVKLTPTFIDEGIGGDKFLSEYRRLIQEQNTKLMLVGVSSGDCKTVAPVAEDLKI 120 GGI GV + T+IDEG G +K LSEYRRL E TK+ML +SSG C VAPVAEDLKI Sbjct: 65 KGGIGGVPVKVTYIDEGGGSEKLLSEYRRL-AEGGTKVMLSAISSGHCGIVAPVAEDLKI 123 Query: 121 LNVMWDCSTEKILEDNRYRYVVRTSADANTEMVAAVLYLLRTKPDFKTLAVINQDYAWGR 180 LN++WDC T+ LE+ +YVVRT A+A TEMVA V+YL++ PDFKTLA++NQDYAWGR Sbjct: 124 LNILWDCGTQNALEEKELKYVVRTEANATTEMVAQVIYLMKMHPDFKTLAIVNQDYAWGR 183 Query: 181 DSWELFRNTLLALKPDTKIVAELFPKLGATDFSTEISRLQALRPDVVLSTSWGGDLDTLV 240 DS ++F L KPD K+VAE+FPK GA DFSTEISRLQALRPDV+LSTSWGGDLD V Sbjct: 184 DSRDIFLAALKKFKPDVKVVAEMFPKFGAADFSTEISRLQALRPDVILSTSWGGDLDNFV 243 Query: 241 RQAAQRGLLKSSQFILPLGESSLERLGDTLPDGVIIGALGDHYYQHPEYKDDAKMKNFVQ 300 RQA+QR L K+S F+L L ESSLERLGD+LP+GVIIGA GDHY+QHPE KDD K F++ Sbjct: 244 RQASQRNLFKNSTFVLSLAESSLERLGDSLPEGVIIGARGDHYWQHPETKDDPAHKEFIK 303 Query: 301 KFKAKTGAYPSYPVFRVVSGLEAVVAGYDKAIKANKGQWPTTEQLADAMHGLEFRALTRP 360 KF KTGAYP YP + + L + AGY+KAI AN G+WPT EQ A AMH + F+ R Sbjct: 304 KFHDKTGAYPIYPAYHMAQALAGLKAGYEKAIAANNGEWPTIEQAAAAMHDVSFKGYGRE 363 Query: 361 VKI-RADGRALQDQLFGVTKKVKGTPFSLIDKIVLYPAAPITAPTGQKSVEWV-KTLKPE 418 V I R DG+AL+ QLFGVT F ++ +++ PA +T P+G + +W+ K L P+ Sbjct: 364 VTINRPDGQALEAQLFGVTTSSPDHSFKVLKDMMIIPAELVTPPSGVNTFDWIEKNLTPD 423 Query: 419 IMKDPGIKAF 428 ++ + F Sbjct: 424 VLNSDKLTTF 433 >ref|ZP_01035722.1| ABC-type transport system periplasmic substrate-binding protein (probable substrates branched-chain/neutral amino acids [Roseovarius sp. 217] gb|EAQ25887.1| ABC-type transport system periplasmic substrate-binding protein (probable substrates branched-chain/neutral amino acids [Roseovarius sp. 217] Length = 433 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 216/406 (53%), Positives = 296/406 (72%) Query: 23 NKPAEIKLGIGTFLSGPASVFGVPAKNGAEMFINDLNAAGGIHGVKLTPTFIDEGIGGDK 82 +KP +K+G+ FL+GPASVFGVPA++ AE+ I ++NAAGGI+GV + +FIDEG G + Sbjct: 26 DKPESLKIGMTAFLTGPASVFGVPARDAAEILIENINAAGGINGVPVDISFIDEGAGAEA 85 Query: 83 FLSEYRRLIQEQNTKLMLVGVSSGDCKTVAPVAEDLKILNVMWDCSTEKILEDNRYRYVV 142 SEYRR+++ ++ML +SSG+C+T+AP+AEDL++ N+MWDC T++I E+N Y+YV Sbjct: 86 LTSEYRRMVESGGAEVMLAAISSGNCQTLAPLAEDLQVPNLMWDCGTQRIFEENDYKYVF 145 Query: 143 RTSADANTEMVAAVLYLLRTKPDFKTLAVINQDYAWGRDSWELFRNTLLALKPDTKIVAE 202 RT A+A EM+A VLYLL+TKPDFKT+AV+NQDYAWGRDSW++F L A+KPD ++VAE Sbjct: 146 RTQANATPEMLATVLYLLKTKPDFKTIAVVNQDYAWGRDSWDIFITALKAMKPDVEVVAE 205 Query: 203 LFPKLGATDFSTEISRLQALRPDVVLSTSWGGDLDTLVRQAAQRGLLKSSQFILPLGESS 262 FPK G+ DFSTEISRLQA++PDV+LSTSWGGDLDT V+QA+QRGL+ +S F+LPL ESS Sbjct: 206 FFPKFGSPDFSTEISRLQAMQPDVILSTSWGGDLDTFVQQASQRGLMNTSTFVLPLAESS 265 Query: 263 LERLGDTLPDGVIIGALGDHYYQHPEYKDDAKMKNFVQKFKAKTGAYPSYPVFRVVSGLE 322 LERLG LPDG IIGA GDHY+ HPE ++D K F+ +++ KTG YPVF + Sbjct: 266 LERLGSALPDGHIIGARGDHYFLHPERRNDEDFKAFMTQYEEKTGDVSVYPVFHASQAIA 325 Query: 323 AVVAGYDKAIKANKGQWPTTEQLADAMHGLEFRALTRPVKIRADGRALQDQLFGVTKKVK 382 A+ A Y+KAI N WP+ +QL A+ GL F+ L RPV +R D + ++DQL G + + Sbjct: 326 ALKAAYEKAIADNSVDWPSEDQLLAALEGLTFQGLGRPVTLREDHQGVEDQLMGTSVQTG 385 Query: 383 GTPFSLIDKIVLYPAAPITAPTGQKSVEWVKTLKPEIMKDPGIKAF 428 PF+ + I+++ +T P GQ S+EWV L ++ + F Sbjct: 386 EYPFATMQNIMIFDGDELTTPVGQNSIEWVGALDAGFVESVTVDTF 431 >ref|YP_003694826.1| extracellular ligand-binding receptor [Starkeya novella DSM 506] gb|ADH90207.1| Extracellular ligand-binding receptor [Starkeya novella DSM 506] Length = 432 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 225/424 (53%), Positives = 296/424 (69%), Gaps = 1/424 (0%) Query: 7 VAAASALLLSGVQAQTNKPAEIKLGIGTFLSGPASVFGVPAKNGAEMFINDLNAAGGIHG 66 V A+ L++S A +KP E+ +GI TFLSG ASVFGVP KN AE+ I DLNA GGI G Sbjct: 8 VLCAAMLMMSSTLA-ADKPKELVVGITTFLSGSASVFGVPGKNAAELLIADLNAKGGILG 66 Query: 67 VKLTPTFIDEGIGGDKFLSEYRRLIQEQNTKLMLVGVSSGDCKTVAPVAEDLKILNVMWD 126 V L P FIDEG G ++ +SEYRR++ + ++ML VSS C + PVAEDL++ N++WD Sbjct: 67 VPLRPIFIDEGAGINQLMSEYRRVVLNEKAEVMLASVSSASCLALTPVAEDLEVPNILWD 126 Query: 127 CSTEKILEDNRYRYVVRTSADANTEMVAAVLYLLRTKPDFKTLAVINQDYAWGRDSWELF 186 CS+ +ILEDN Y+Y VRT + + EM+AA LYL++ K DFKT+A +NQDYA GRD W LF Sbjct: 127 CSSPRILEDNNYKYSVRTQSHSGAEMLAAALYLVKNKADFKTVAGVNQDYAAGRDQWGLF 186 Query: 187 RNTLLALKPDTKIVAELFPKLGATDFSTEISRLQALRPDVVLSTSWGGDLDTLVRQAAQR 246 R L ALKPD +IVAELFPK GA D+STEISRLQALRPDV+++TSWGGDLDT V+QA+ R Sbjct: 187 RIALKALKPDVEIVAELFPKFGAPDYSTEISRLQALRPDVIVNTSWGGDLDTFVQQASAR 246 Query: 247 GLLKSSQFILPLGESSLERLGDTLPDGVIIGALGDHYYQHPEYKDDAKMKNFVQKFKAKT 306 G++ + F+ PLGESSL+RLG +P GVIIG GDHY+ HP+Y + + FV++++ KT Sbjct: 247 GVMTQATFVFPLGESSLQRLGGAMPAGVIIGGRGDHYFLHPKYAQEPAFREFVERYREKT 306 Query: 307 GAYPSYPVFRVVSGLEAVVAGYDKAIKANKGQWPTTEQLADAMHGLEFRALTRPVKIRAD 366 AYP YPV + + A+ Y KA N WP+ EQL A GL+FR LT V IR D Sbjct: 307 SAYPIYPVLHMAQAISALEGAYKKAALTNDVPWPSKEQLMAAFRGLKFRGLTSEVSIRED 366 Query: 367 GRALQDQLFGVTKKVKGTPFSLIDKIVLYPAAPITAPTGQKSVEWVKTLKPEIMKDPGIK 426 + L+DQL G T +V F+++D++ +YPA +T P G KS +W+ ++ E DP I+ Sbjct: 367 NQGLEDQLIGTTVRVPEYGFAVLDRMSIYPAELVTTPIGAKSADWLSQIRLETANDPSIE 426 Query: 427 AFPA 430 F A Sbjct: 427 TFEA 430