BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0102.p (316 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004416759.1| ABC-type transport system permease protein I... 316 3e-84 ref|ZP_06690081.1| ABC superfamily ATP binding cassette transpor... 285 5e-75 ref|ZP_01035720.1| ABC-type transport system permease protein II... 257 2e-66 ref|YP_001416259.1| inner-membrane translocator [Xanthobacter au... 246 4e-63 ref|YP_003694828.1| inner-membrane translocator [Starkeya novell... 244 2e-62 >ref|YP_004416759.1| ABC-type transport system permease protein II [Pusillimonas sp. T7-7] gb|AEC20135.1| ABC-type transport system permease protein II [Pusillimonas sp. T7-7] Length = 307 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 161/283 (56%), Positives = 205/283 (72%) Query: 24 WLKTPIIFATCAGLAALGISILVRSGQVSFGHAIFACAAGYAVAFAAKRWTHLDSIALLA 83 W+ TPII +AALG+S+++R+GQVSFGHA++AC + Y VAF A+ + LD + L+ Sbjct: 22 WVITPIIIGITYAIAALGVSVMMRAGQVSFGHAMYACISAYTVAFLARAYPSLDVVVLIL 81 Query: 84 VGTLFGGLLGAVIGSFVVRYRGIFFGMLNLALSMVLYSILGKFFELTGGTDGIRIARPTF 143 G L VIG FV RYRGIFFGMLNLALSMVL+++LGK + LTGGTDG+RI RPT Sbjct: 82 AGVLVAVAASMVIGVFVARYRGIFFGMLNLALSMVLFALLGKLYHLTGGTDGLRIERPTI 141 Query: 144 FGFVLERDMFESAILVTAVVLSLLLGMLVQRYLRSVAGQALAAIKTNETRLEYVGLSTYQ 203 G LER +E A+L V ++L L +QRY RS G+ALAAIKTNETRLEY+G S Y Sbjct: 142 LGMELERAPYEFALLAITVFIALALAWWIQRYFRSGDGEALAAIKTNETRLEYLGFSAYS 201 Query: 204 VLLIGYVISAALCGLSGALFAITQGLVTPEMGYWVRSGEYVFVAILGGIGHPVGAFVGAA 263 V+ GY+ISA + G SG+L A+ QGLVTPE+G W+RSGEYVF+AILGG GH +GAF+GA Sbjct: 202 VMWRGYLISAVVVGFSGSLLALIQGLVTPEIGLWLRSGEYVFIAILGGAGHVIGAFLGAL 261 Query: 264 IFEFVKLFSAAFLTGAWQMVLGVVLITMVFLAPAGLSALLVKK 306 +FE VKL S A+ G WQ +LG+ LI ++FL P G+ L K+ Sbjct: 262 VFEAVKLVSTAYFPGLWQFILGLTLIIVIFLFPRGIVGELSKR 304 >ref|ZP_06690081.1| ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] gb|EFF73038.1| ABC superfamily ATP binding cassette transporter, membrane protein [Achromobacter piechaudii ATCC 43553] Length = 338 Score = 285 bits (730), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 162/306 (52%), Positives = 218/306 (71%), Gaps = 2/306 (0%) Query: 5 KLVVILLL--LLALLLPLVLPWLKTPIIFATCAGLAALGISILVRSGQVSFGHAIFACAA 62 K+VV+ L+ L L L L W TPI+ +AALG+S++ R+GQ+SFGHA+++C + Sbjct: 2 KVVVLSLVAALATLCLGYTLSWTITPIVIGLTYAIAALGVSVMARAGQISFGHAMYSCIS 61 Query: 63 GYAVAFAAKRWTHLDSIALLAVGTLFGGLLGAVIGSFVVRYRGIFFGMLNLALSMVLYSI 122 Y VAF A+ D++ L+ G L VIG FVVRYRGIFFGMLNLALSMVL+++ Sbjct: 62 AYTVAFLARAMPGTDALVLILAGVAASFLAAIVIGLFVVRYRGIFFGMLNLALSMVLFAL 121 Query: 123 LGKFFELTGGTDGIRIARPTFFGFVLERDMFESAILVTAVVLSLLLGMLVQRYLRSVAGQ 182 LGK + LTGG+DG+RI RP G ++ER+ FE A+LV +VLS++L VQRY RS +GQ Sbjct: 122 LGKLYTLTGGSDGMRIVRPAMAGVLMERESFERALLVLTLVLSMVLAWWVQRYFRSGSGQ 181 Query: 183 ALAAIKTNETRLEYVGLSTYQVLLIGYVISAALCGLSGALFAITQGLVTPEMGYWVRSGE 242 AL+AIKTNETR+EY+G S Y ++ GY++SA + G SGA+ A+ QGLVTPE+G W+RSGE Sbjct: 182 ALSAIKTNETRIEYLGFSAYFIMWKGYLLSAVVVGFSGAILALMQGLVTPEIGSWLRSGE 241 Query: 243 YVFVAILGGIGHPVGAFVGAAIFEFVKLFSAAFLTGAWQMVLGVVLITMVFLAPAGLSAL 302 +VF+ ILGG GH GAF+GA FE VKL SAA+ G WQ +LG+ LI ++F+ P G Sbjct: 242 FVFITILGGAGHAAGAFLGAVGFETVKLVSAAYFPGLWQFLLGLTLILVIFMFPTGFVGQ 301 Query: 303 LVKKRA 308 ++K+ A Sbjct: 302 IMKRVA 307 >ref|ZP_01035720.1| ABC-type transport system permease protein II (probable substrates branched-chain/neutral amino acids) 5 [Roseovarius sp. 217] gb|EAQ25885.1| ABC-type transport system permease protein II (probable substrates branched-chain/neutral amino acids) 5 [Roseovarius sp. 217] Length = 311 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 136/286 (47%), Positives = 186/286 (65%) Query: 18 LPLVLPWLKTPIIFATCAGLAALGISILVRSGQVSFGHAIFACAAGYAVAFAAKRWTHLD 77 +P ++P ++ + FA GLA LG+++L+R+GQVSFGHA++ A YA AF D Sbjct: 7 VPFLVPSMQLLVNFALAKGLAVLGVTVLLRAGQVSFGHALYFGIAAYAGAFLMTSMPATD 66 Query: 78 SIALLAVGTLFGGLLGAVIGSFVVRYRGIFFGMLNLALSMVLYSILGKFFELTGGTDGIR 137 +L VG L + G +G FVVRYRGIFFGMLNLA SM+ +SIL KF+ LTGG DG+R Sbjct: 67 FFVILIVGVLGAIVAGLFVGLFVVRYRGIFFGMLNLAFSMIFWSILEKFYHLTGGADGLR 126 Query: 138 IARPTFFGFVLERDMFESAILVTAVVLSLLLGMLVQRYLRSVAGQALAAIKTNETRLEYV 197 RPT FG L+ F + + +VL + LG R+ S GQ IKTNETRLEY+ Sbjct: 127 FTRPTVFGQALDHVQFNMVLYYSVLVLMVALGWFTHRWFASPVGQLFQTIKTNETRLEYL 186 Query: 198 GLSTYQVLLIGYVISAALCGLSGALFAITQGLVTPEMGYWVRSGEYVFVAILGGIGHPVG 257 G+S + LL GY++SAALCG+ G + + QG+VTPE +WVRS E VF+A+LGG G G Sbjct: 187 GISPKRALLSGYLLSAALCGVGGVMMGMAQGVVTPEYVWWVRSAEMVFIAVLGGAGSVQG 246 Query: 258 AFVGAAIFEFVKLFSAAFLTGAWQMVLGVVLITMVFLAPAGLSALL 303 AF+GA I+E V+ +++ + WQM+LG L+ ++ AP GL +L Sbjct: 247 AFLGALIYEVVRTYASVYAGDIWQMILGGFLLIIILFAPGGLIGIL 292 >ref|YP_001416259.1| inner-membrane translocator [Xanthobacter autotrophicus Py2] gb|ABS66602.1| inner-membrane translocator [Xanthobacter autotrophicus Py2] Length = 324 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 137/252 (54%), Positives = 172/252 (68%) Query: 52 SFGHAIFACAAGYAVAFAAKRWTHLDSIALLAVGTLFGGLLGAVIGSFVVRYRGIFFGML 111 SFGH +F Y VAF + D LLA + LLG ++G FVVRYR IFFGML Sbjct: 52 SFGHGMFFATGAYTVAFLGRSVGGGDIALLLAASAVSSVLLGLLVGLFVVRYRYIFFGML 111 Query: 112 NLALSMVLYSILGKFFELTGGTDGIRIARPTFFGFVLERDMFESAILVTAVVLSLLLGML 171 NLA SMVLYSIL KFF LTGG+DG+RI RP+ FGF +R F++ I +VL+ L Sbjct: 112 NLAFSMVLYSILEKFFHLTGGSDGLRIRRPSAFGFAFDRAQFDTLIYYLTLVLAFGAAYL 171 Query: 172 VQRYLRSVAGQALAAIKTNETRLEYVGLSTYQVLLIGYVISAALCGLSGALFAITQGLVT 231 V RYLRS GQAL AIK+NETRLEY+GLS V+L+GYVISA LCG+ GA I QG+ T Sbjct: 172 VWRYLRSPLGQALKAIKSNETRLEYIGLSARFVMLVGYVISALLCGIGGACLGIIQGIAT 231 Query: 232 PEMGYWVRSGEYVFVAILGGIGHPVGAFVGAAIFEFVKLFSAAFLTGAWQMVLGVVLITM 291 PE YW RS E+VF+AILGG+GH GA G ++E V+ ++AAF+ +WQM+LG VL+ + Sbjct: 232 PEYSYWTRSAEFVFIAILGGVGHVAGALTGTFVYEAVRTYAAAFVADSWQMILGFVLLAI 291 Query: 292 VFLAPAGLSALL 303 + AP G+ L+ Sbjct: 292 ILKAPTGIVGLV 303 >ref|YP_003694828.1| inner-membrane translocator [Starkeya novella DSM 506] gb|ADH90209.1| inner-membrane translocator [Starkeya novella DSM 506] Length = 311 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 133/284 (46%), Positives = 182/284 (64%) Query: 24 WLKTPIIFATCAGLAALGISILVRSGQVSFGHAIFACAAGYAVAFAAKRWTHLDSIALLA 83 W + A GL+ L I +L+R+GQVSFGH ++ Y VAF K LD++ L+ Sbjct: 24 WTTVMLTIALAIGLSVLAIVVLLRAGQVSFGHGLYYATGAYTVAFLVKARLSLDALILIP 83 Query: 84 VGTLFGGLLGAVIGSFVVRYRGIFFGMLNLALSMVLYSILGKFFELTGGTDGIRIARPTF 143 +G L L+ G F VRYR IFF M+NLA+SMV +S+L K + +TGG DG+ +ARPT Sbjct: 84 LGGLVAMLIAVAFGFFAVRYRDIFFAMINLAISMVAFSLLEKLYHITGGGDGMNVARPTL 143 Query: 144 FGFVLERDMFESAILVTAVVLSLLLGMLVQRYLRSVAGQALAAIKTNETRLEYVGLSTYQ 203 G L+R FE+ + + ++ L G+LV RYL S G+AL A+K+NE RLEY+G+S Sbjct: 144 GGGRLDRAAFEAWMFYATLAIAALAGLLVTRYLASPLGRALEAVKSNEMRLEYLGVSGNH 203 Query: 204 VLLIGYVISAALCGLSGALFAITQGLVTPEMGYWVRSGEYVFVAILGGIGHPVGAFVGAA 263 VL + Y ISAAL G+SGA+ AI G V PE YWVRSGE+VF+AILGG G+ +GAF G+ Sbjct: 204 VLHVAYAISAALAGVSGAIIAIVNGHVAPEFAYWVRSGEFVFIAILGGAGNVLGAFAGSM 263 Query: 264 IFEFVKLFSAAFLTGAWQMVLGVVLITMVFLAPAGLSALLVKKR 307 +FE ++ +AA WQ LG+ LI ++ AP GL+ L K+ Sbjct: 264 VFEAIRNHAAALAADYWQTTLGLSLIAIIMFAPDGLTQLRFKRN 307