BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0089.p (284 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751014.1| transcriptional regulator [Collimonas fungiv... 522 e-146 ref|ZP_04681497.1| LysR family transcriptional regulator [Ochrob... 239 3e-61 ref|YP_001767406.1| LysR family transcriptional regulator [Methy... 234 1e-59 ref|YP_349008.1| LysR family transcriptional regulator [Pseudomo... 229 5e-58 ref|YP_001187697.1| LysR family transcriptional regulator [Pseud... 226 3e-57 >ref|YP_004751014.1| transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60191.1| Transcriptional regulator [Collimonas fungivorans Ter331] Length = 323 Score = 522 bits (1345), Expect = e-146, Method: Compositional matrix adjust. Identities = 249/283 (87%), Positives = 269/283 (95%) Query: 1 LNFARAAAEMGVTPTAVSRTIKSVEAQLNVRLFNRTTRSVSLTEAGASLNAALAPALALI 60 LNFARAAAE+GVTPTAVSRTIKSVEAQL++RLFNRTTRSVSLTEAGA LNA LAPALALI Sbjct: 40 LNFARAAAELGVTPTAVSRTIKSVEAQLDIRLFNRTTRSVSLTEAGAFLNAELAPALALI 99 Query: 61 KNSLSEVLLATDQPSGTVRINSSYVAYRILIEPHLDAFIESFPLINVEISLDNELSDIVN 120 K+SLS VL ATDQPSGTVR+NSSYVAYRILIEPHL AF+E FPLINVEISLDN+LSDIVN Sbjct: 100 KSSLSRVLTATDQPSGTVRVNSSYVAYRILIEPHLQAFLEKFPLINVEISLDNQLSDIVN 159 Query: 121 AGFDMGIRMGKRVQNDMVAVQLGAVQKRIVVAAPDYFRERGEPQTIDELLKHNCIRQRYS 180 AGFD+GIRMGKRVQNDMVAVQLGAVQKRIVVAAPDYF +R EPQT+++LLKHNCIRQRYS Sbjct: 160 AGFDIGIRMGKRVQNDMVAVQLGAVQKRIVVAAPDYFSKRAEPQTLEQLLKHNCIRQRYS 219 Query: 181 VGGRFFEWKFEAQRQMVQIDVQGRLIFDEMRSVLDAAIQGQGIGFVFEDFAKQELASGVL 240 VGGRFFEWKFE + QMVQ+DVQGR IFDEMRSVLDAAIQGQGIGFVFEDFA+QELASG+L Sbjct: 220 VGGRFFEWKFEDRGQMVQVDVQGRFIFDEMRSVLDAAIQGQGIGFVFEDFAEQELASGML 279 Query: 241 RRILTQHSGLDDAFHLYYPHRKHMPGKLRAFVDFMRSANRAKT 283 R++L +HS LDDAFHLYYPHRKHMPGKLRAFVDFMRSANR +T Sbjct: 280 RQVLKRHSALDDAFHLYYPHRKHMPGKLRAFVDFMRSANRTET 322 >ref|ZP_04681497.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] gb|EEQ97003.1| LysR family transcriptional regulator [Ochrobactrum intermedium LMG 3301] Length = 300 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 119/278 (42%), Positives = 175/278 (62%), Gaps = 1/278 (0%) Query: 2 NFARAAAEMGVTPTAVSRTIKSVEAQLNVRLFNRTTRSVSLTEAGASLNAALAPALALIK 61 +F AA E+ + P AVS + ++E L VRL RTTRSV+ TEAG L LAPALA I Sbjct: 20 SFRGAARELAIAPPAVSHAVATLEDSLGVRLLARTTRSVAPTEAGRRLLKRLAPALAEID 79 Query: 62 NSLSEVLLATDQPSGTVRINSSYVAYRILIEPHLDAFIESFPLINVEISLDNELSDIVNA 121 +L L D+P+G +RI++ VA ++++ P L F+ +P I +++ +DN +DIV A Sbjct: 80 QALGAALETKDRPAGILRISAPLVATQLMLAPRLGEFVRHYPDITLDLRIDNAFTDIVAA 139 Query: 122 GFDMGIRMGKRVQNDMVAVQLGAVQKRIVVAAPDYFRERGEPQTIDELLKHNCIRQRYSV 181 GFD G+R+G+ ++ DM+AV+LG Q+ VV +P YF R P +L +H C+RQR+ Sbjct: 140 GFDAGVRLGENLEADMIAVRLGGPQRGAVVGSPAYFEARPAPSHPRDLAQHRCLRQRFP- 198 Query: 182 GGRFFEWKFEAQRQMVQIDVQGRLIFDEMRSVLDAAIQGQGIGFVFEDFAKQELASGVLR 241 GGR + W+FE Q+V+I V+G LI ++ +L+AA+ G G+ ++FED+ + LA G L Sbjct: 199 GGRLYRWEFEKNGQIVEIGVEGPLIANDNGILLEAALAGAGLVWLFEDYTRDFLAEGRLV 258 Query: 242 RILTQHSGLDDAFHLYYPHRKHMPGKLRAFVDFMRSAN 279 R+L + FHLYYP R+ M LRAF+DF R Sbjct: 259 RVLEDWCAPFEGFHLYYPSRRQMRPALRAFIDFYRHGT 296 >ref|YP_001767406.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gb|ACA14972.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 298 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 121/280 (43%), Positives = 176/280 (62%), Gaps = 1/280 (0%) Query: 2 NFARAAAEMGVTPTAVSRTIKSVEAQLNVRLFNRTTRSVSLTEAGASLNAALAPALALIK 61 +F RAAAE+G++P+A+S ++ +EA+L RL NRTTRSV+ TEAGA+L A L PAL I Sbjct: 20 SFRRAAAELGLSPSALSHALRDLEARLGARLLNRTTRSVAPTEAGAALLARLGPALDEID 79 Query: 62 NSLSEVLLATDQPSGTVRINSSYVAYRILIEPHLDAFIESFPLINVEISLDNELSDIVNA 121 +L EV + + +GT+R+N+ A R+++ P F+ P + +EI+ D+ L+DIV Sbjct: 80 RALGEVAASGGRLTGTLRLNAPRSACRLVLAPLAARFLSRHPGLRLEIACDDALADIVRE 139 Query: 122 GFDMGIRMGKRVQNDMVAVQLGAVQKRIVVAAPDYFRERGEPQTIDELLKHNCIRQRYSV 181 GFD G+R G+RV DM+AV LG Q+ VV +P Y RG P T ++L H C+RQR++ Sbjct: 140 GFDAGVRFGERVPRDMIAVPLGGRQRFAVVGSPAYLAARGLPATPEDLAGHACLRQRFA- 198 Query: 182 GGRFFEWKFEAQRQMVQIDVQGRLIFDEMRSVLDAAIQGQGIGFVFEDFAKQELASGVLR 241 GG W+FE + + +D+ G LI +E +L AA++G G+ VFE +A LA G L Sbjct: 199 GGAVMRWEFERDGRALALDLDGPLILNEQELLLQAAVEGSGLAQVFEGYAAPFLAEGRLV 258 Query: 242 RILTQHSGLDDAFHLYYPHRKHMPGKLRAFVDFMRSANRA 281 R+L F LY+P R+ P LRAF+DF+R + A Sbjct: 259 RLLEPWCPSFPGFLLYHPSRRQPPPPLRAFLDFVRESAAA 298 >ref|YP_349008.1| LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] gb|ABA75017.1| putative LysR family transcriptional regulator [Pseudomonas fluorescens Pf0-1] Length = 301 Score = 229 bits (583), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 113/283 (39%), Positives = 178/283 (62%), Gaps = 1/283 (0%) Query: 1 LNFARAAAEMGVTPTAVSRTIKSVEAQLNVRLFNRTTRSVSLTEAGASLNAALAPALALI 60 LNF+RAA ++G+TP+A+S +++++E +L VRLFNRTTRSV+LTEAG L A L PA I Sbjct: 19 LNFSRAAVDLGLTPSALSHSLRALENRLGVRLFNRTTRSVALTEAGERLYARLKPAFRDI 78 Query: 61 KNSLSEVLLATDQPSGTVRINSSYVAYRILIEPHLDAFIESFPLINVEISLDNELSDIVN 120 ++L ++ D+PSG +RI + A +++ P F++ +P I +E+ + L DIV Sbjct: 79 DDALEDLNHFRDKPSGNLRITAGRQACELVLLPIASEFLKIYPDIRLEVVESDALLDIVA 138 Query: 121 AGFDMGIRMGKRVQNDMVAVQLGAVQKRIVVAAPDYFRERGEPQTIDELLKHNCIRQRYS 180 +GFD G+R G R++ DMV++ +G + +VV AP +F PQ ++L CIR R+ Sbjct: 139 SGFDAGVRFGNRLEADMVSMPIGPNLRSVVVGAPGFFERHPAPQKPEDLHALPCIRHRFP 198 Query: 181 VGGRFFEWKFEAQRQMVQIDVQGRLIFDEMRSVLDAAIQGQGIGFVFEDFAKQELASGVL 240 G + W+FE +I++ G L ++ ++ A+QG G+ +VFE+ A++ LASG L Sbjct: 199 -SGSMYRWEFERGGIEQEIEINGPLTLGDVSLMIGPALQGLGLAYVFENMAREHLASGRL 257 Query: 241 RRILTQHSGLDDAFHLYYPHRKHMPGKLRAFVDFMRSANRAKT 283 ++L HLYYP R+H+P L+AF+DF R+A+ KT Sbjct: 258 VQVLADWCPYYPGLHLYYPSRRHVPAPLKAFIDFARNASEGKT 300 >ref|YP_001187697.1| LysR family transcriptional regulator [Pseudomonas mendocina ymp] gb|ABP84965.1| transcriptional regulator, LysR family [Pseudomonas mendocina ymp] Length = 300 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 107/280 (38%), Positives = 179/280 (63%), Gaps = 1/280 (0%) Query: 1 LNFARAAAEMGVTPTAVSRTIKSVEAQLNVRLFNRTTRSVSLTEAGASLNAALAPALALI 60 L+ +RAA ++G++P+A+S ++++E +L VRLFNRTTRSV+LTEAG L + + PA I Sbjct: 19 LSLSRAAIDLGLSPSALSHALRTLETRLGVRLFNRTTRSVALTEAGERLYSRVRPAFRDI 78 Query: 61 KNSLSEVLLATDQPSGTVRINSSYVAYRILIEPHLDAFIESFPLINVEISLDNELSDIVN 120 ++L ++ D+PSG +RI + A ++++ P + F++++P + V+I D+ L D+V+ Sbjct: 79 DDALEDLNNFRDKPSGNLRITAGRPAAQLVLLPMVSKFLQAYPDVRVDIVTDDALVDVVS 138 Query: 121 AGFDMGIRMGKRVQNDMVAVQLGAVQKRIVVAAPDYFRERGEPQTIDELLKHNCIRQRYS 180 AGFD G+R G+R++ DMV++ +G + +VV +P++ R+ PQ +L CIR R+ Sbjct: 139 AGFDAGVRFGERLEADMVSLAIGPYMRSVVVGSPEFLRQYPTPQKPQDLHGIPCIRHRFP 198 Query: 181 VGGRFFEWKFEAQRQMVQIDVQGRLIFDEMRSVLDAAIQGQGIGFVFEDFAKQELASGVL 240 G F+ W+F ++IDV+G LI ++ ++D A+QG G+ +VFE + LASG L Sbjct: 199 -SGSFYRWEFSQAGVELEIDVEGPLILSDVGLMVDPALQGVGLAYVFEGMVSEHLASGRL 257 Query: 241 RRILTQHSGLDDAFHLYYPHRKHMPGKLRAFVDFMRSANR 280 ++L HLYYP R+ +P L+AF++F R R Sbjct: 258 IQVLESWCPFYPGLHLYYPSRRQVPAALKAFIEFARDTRR 297