BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0088.p (413 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_06367739.1| Extracellular ligand-binding receptor [Desulf... 344 2e-92 ref|ZP_07334022.1| Extracellular ligand-binding receptor [Desulf... 334 2e-89 ref|YP_002953642.1| ABC transporter substrate binding protein pr... 333 3e-89 ref|YP_001414920.1| extracellular ligand-binding receptor [Xanth... 234 2e-59 ref|YP_995692.1| extracellular ligand-binding receptor [Verminep... 221 2e-55 >ref|ZP_06367739.1| Extracellular ligand-binding receptor [Desulfovibrio sp. FW1012B] gb|EFC21994.1| Extracellular ligand-binding receptor [Desulfovibrio sp. FW1012B] Length = 418 Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 186/403 (46%), Positives = 259/403 (64%), Gaps = 4/403 (0%) Query: 9 ATMVAWGSMALAGVASAQVKEVKIGYLLPLTADNAPQGQQSKRAVDMAVEEINASGGIKA 68 A + +G++ A A K +KIG + PL+ +A G Q K+A +MAVEEINA+GGIK+ Sbjct: 16 AAVWTFGAVLAVSPAVAADKTIKIGNVEPLSGPSASVGVQGKQAREMAVEEINAAGGIKS 75 Query: 69 LGGAKLKIIYADTQSKPQVAVQEAERLISQEKVDFLAGAYNSGVTLPASEVAERYKKVWW 128 LGGAKL+++YAD++S P V V E ERLI+ EKV+ + G +NS VT PA++VAERY + Sbjct: 76 LGGAKLELVYADSKSDPTVGVTETERLINTEKVNLMTGCWNSAVTYPATQVAERYGIPFV 135 Query: 129 TPVSSDDSITNRPGFKYVFRLAEKTSMRIVAQLDFIQAMAKQKNVPIKTVALVYENSGYG 188 PV+ D+IT R GFK VFR+A K S + Q F++ M ++ V +KT+A V+EN +G Sbjct: 136 VPVAVRDTITER-GFKNVFRIAAKDSWWVRDQFRFLKDMQEETGVKLKTIAFVFENGDWG 194 Query: 189 QGAALQWRKLVPQQGWKIVLDEPFDPKTTDPSPVITKVKAAKADIVLLANSFMPAAVMMA 248 G A +WR+L + G++IVLDEP+ TD +PV+TK+K+A DIVLL S A+++ Sbjct: 195 TGFAEKWRELAKKDGYQIVLDEPYPSTATDLTPVVTKLKSANPDIVLLV-SNAADAILLT 253 Query: 249 KSFKEQGVKPKAFFATSAAHSDPDYLKNAGDAALGVFDVSGWEPDVNRPFSKDVAKKFQD 308 + E V+PK A+ H+DP +L+N G ALG+FD W DVN+P +K+ KF+ Sbjct: 254 NNMTEMQVRPKVVLASGGGHADPKFLENTGTNALGLFDEVEWNTDVNKPGAKETNAKFKK 313 Query: 309 KYGLLLNNETAKEYAGMYVVKDVLERAASTDPEKVRNAFAATDLKEGMTQIYS-NRVHFD 367 KYG L E+ YA +YV+ D LERAASTDP K+R+A A T+L G I S + V FD Sbjct: 314 KYGYDLTGESVDAYAAVYVIADALERAASTDPAKIRDALATTNLTTGPGMIVSYDGVQFD 373 Query: 368 STGTFPDTSSLVLVQFLKVNGKVERVTVGPAEQARPGQKFIFP 410 TG + + +V+VQ VNG+ ERVTV P R G +FP Sbjct: 374 ETGQNKN-AGIVIVQVADVNGQPERVTVWPKSARRAGYTPVFP 415 >ref|ZP_07334022.1| Extracellular ligand-binding receptor [Desulfovibrio fructosovorans JJ] gb|EFL50736.1| Extracellular ligand-binding receptor [Desulfovibrio fructosovorans JJ] Length = 415 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 186/410 (45%), Positives = 254/410 (61%), Gaps = 4/410 (0%) Query: 2 KKSLISLATMVAWGSMALAGVASAQVKEVKIGYLLPLTADNAPQGQQSKRAVDMAVEEIN 61 K+SL++ A G A A+A K VKIG + P++ +A G Q K+A +MAVEEIN Sbjct: 6 KRSLVACCLAAALGLFLAASPAAAADKVVKIGNVEPMSGPSASVGVQGKQAREMAVEEIN 65 Query: 62 ASGGIKALGGAKLKIIYADTQSKPQVAVQEAERLISQEKVDFLAGAYNSGVTLPASEVAE 121 A+GGIK+LGGAKL ++YAD++S P V V E ERLI+ EKV+ L G +NS VT PA++VAE Sbjct: 66 AAGGIKSLGGAKLDLVYADSKSDPTVGVTETERLINTEKVNILTGCWNSAVTYPATQVAE 125 Query: 122 RYKKVWWTPVSSDDSITNRPGFKYVFRLAEKTSMRIVAQLDFIQAMAKQKNVPIKTVALV 181 RY + PV+ D+IT R GFK +FR+A K S + Q F++ M + + T+A V Sbjct: 126 RYGIPFVVPVAVRDTITER-GFKNIFRVAAKDSWWVRDQFRFLKDMQAETGTKLNTIAFV 184 Query: 182 YENSGYGQGAALQWRKLVPQQGWKIVLDEPFDPKTTDPSPVITKVKAAKADIVLLANSFM 241 +EN +G G A +WRKL + G+K+VLDEP+ TD +PV+TK+KAA DIV+L S Sbjct: 185 FENGDWGTGFAEKWRKLAEKDGYKVVLDEPYPSTATDLTPVVTKLKAANPDIVMLV-SNA 243 Query: 242 PAAVMMAKSFKEQGVKPKAFFATSAAHSDPDYLKNAGDAALGVFDVSGWEPDVNRPFSKD 301 A+++ + E +KPK + H+DP +L+N GD ALG FD W DVN+P +K+ Sbjct: 244 ADAILLTNTMAEMQLKPKVVLTSGGGHADPKFLENTGDNALGFFDEVEWNTDVNKPGAKE 303 Query: 302 VAKKFQDKYGLLLNNETAKEYAGMYVVKDVLERAASTDPEKVRNAFAATDLKEGMTQIYS 361 KF+ KYG + E+ Y MYV+ D LERA STDP K+R A A T L G I S Sbjct: 304 TNAKFKKKYGYDMTGESVDAYVSMYVIADALERAGSTDPAKLREALATTKLTTGPAMIVS 363 Query: 362 -NRVHFDSTGTFPDTSSLVLVQFLKVNGKVERVTVGPAEQARPGQKFIFP 410 + V FD G + + +V+VQ KV+GK +RVTV P R G +FP Sbjct: 364 YDGVEFDKDGQNKN-AGIVIVQVAKVDGKPQRVTVWPKSARRAGYTPVFP 412 >ref|YP_002953642.1| ABC transporter substrate binding protein precursor [Desulfovibrio magneticus RS-1] dbj|BAH75756.1| ABC transporter substrate binding protein precursor [Desulfovibrio magneticus RS-1] Length = 415 Score = 333 bits (855), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 178/384 (46%), Positives = 249/384 (64%), Gaps = 4/384 (1%) Query: 28 KEVKIGYLLPLTADNAPQGQQSKRAVDMAVEEINASGGIKALGGAKLKIIYADTQSKPQV 87 K VKIG + PL+ +A G Q K+A +MA+EEINA+GGIK+LGGAKL+++YAD++S P V Sbjct: 32 KTVKIGNVEPLSGPSASVGVQGKQAREMAIEEINAAGGIKSLGGAKLELVYADSKSDPTV 91 Query: 88 AVQEAERLISQEKVDFLAGAYNSGVTLPASEVAERYKKVWWTPVSSDDSITNRPGFKYVF 147 V E ERLI+ EKV+ + G +NS VT PA++VAERY + PV+ D+IT R GFK VF Sbjct: 92 GVTETERLINTEKVNLMTGCWNSAVTYPATQVAERYGIPFVVPVAVRDTITER-GFKNVF 150 Query: 148 RLAEKTSMRIVAQLDFIQAMAKQKNVPIKTVALVYENSGYGQGAALQWRKLVPQQGWKIV 207 R+A K S + Q F++ M ++ V ++ +A V+EN +G G A +WR+L + G+++V Sbjct: 151 RIAAKDSWWVRDQFRFLKDMQEETGVKLQKIAFVFENGDWGTGFAEKWRELAKKDGYEVV 210 Query: 208 LDEPFDPKTTDPSPVITKVKAAKADIVLLANSFMPAAVMMAKSFKEQGVKPKAFFATSAA 267 LDEP+ TD +PV+TK+KAAK DIV+L S A+++ + E VKPK A+ Sbjct: 211 LDEPYPSTATDLTPVVTKLKAAKPDIVMLV-SNAADAILLTNTMAEMQVKPKVVLASGGG 269 Query: 268 HSDPDYLKNAGDAALGVFDVSGWEPDVNRPFSKDVAKKFQDKYGLLLNNETAKEYAGMYV 327 H+DP +L+N ALG+FD W DVN+P +K +KF+ KYG L E+ Y MYV Sbjct: 270 HADPKFLENTDTNALGIFDEVEWNTDVNKPAAKPANEKFKKKYGYDLTGESVDAYVAMYV 329 Query: 328 VKDVLERAASTDPEKVRNAFAATDLKEGMTQIYS-NRVHFDSTGTFPDTSSLVLVQFLKV 386 + D LERAAST+P K+R+A AAT+L G + S + V FD TG + + +V+VQ V Sbjct: 330 IADALERAASTEPAKIRDALAATNLTTGPGMVVSYDGVQFDETGQNKN-AGIVIVQVANV 388 Query: 387 NGKVERVTVGPAEQARPGQKFIFP 410 +GK +RVTV P R G FP Sbjct: 389 DGKPDRVTVWPKAARRAGYVPAFP 412 >ref|YP_001414920.1| extracellular ligand-binding receptor [Xanthobacter autotrophicus Py2] gb|ABS65263.1| Extracellular ligand-binding receptor [Xanthobacter autotrophicus Py2] Length = 417 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 143/393 (36%), Positives = 213/393 (54%), Gaps = 14/393 (3%) Query: 25 AQVKEVKIGYLLPLTADNAPQGQQSKRAVDMAVEEINASGGIKALGGAKLKIIYADTQSK 84 A ++V +G++LPL+ +A G Q+K +A E+INA+GGI +LGGAKLK+I+AD+QSK Sbjct: 25 ADPQDVTVGFVLPLSGGSATIGNQTKLGAQVAAEQINAAGGIASLGGAKLKLIFADSQSK 84 Query: 85 PQVAVQEAERLISQEKVDFLAGAYNSGVTLPASEVAERYKKVWWTPVSSDDSITNRPGFK 144 P + E ERLI +E V L GAYNS VT PASEVAERYK W + D IT R GFK Sbjct: 85 PDIGASETERLIQRENVALLVGAYNSAVTFPASEVAERYKTPWIVTGAVKDEITER-GFK 143 Query: 145 YVFRLAEKTSMRIVAQLDFIQAMAKQKNVPIKTVALVYENSGYGQGAALQWRKLVPQQGW 204 YVFR K + QLD I + K+ ++ L YE + +G+ A +K ++G+ Sbjct: 144 YVFRPNNKATYDAREQLDAIDLLKKETGKGPSSIGLFYEGTDWGRSHAANIKKFAKERGY 203 Query: 205 KIVLDEPFDPKTTDPSPVITKVKAAKADIVLLANSFMPAAVMMAKSFKEQGVK-PKAFFA 263 I LDE F P D + + K++AAK + L+ ++ P ++ + + E + P + Sbjct: 204 TISLDESFPPNQVDFTAQMLKIRAAKPE-ALIVVAYTPDHLLFTRQYFENKINIPYGIHS 262 Query: 264 TSAAHSDPDYLKNAGDAALG-VFDVSGWEPDVNR----PFSKDVAKKFQDKYGLLLNNET 318 DP + K A+ +F W+ D + P D +F+ + G +N+ Sbjct: 263 VGGGSEDPSFYKAVPQKAVDYLFVQEDWQIDRLKTDTDPRVVDANTRFKAQAGYDINSYG 322 Query: 319 AKEYAGMYVVKDVLERAASTDPEKVRNAFAATDLKEGMTQIYS-NRVHFDSTGTFPDTSS 377 A+ + +Y++KDVLER+AS D EK+R+A AATD+ GM I R+ FD G + Sbjct: 323 AQGISNIYLIKDVLERSASADREKIRDALAATDITSGMPLIVGYQRIKFDEQG-----QN 377 Query: 378 LVLVQFLKVNGKVERVTVGPAEQARPGQKFIFP 410 + N ER T+ P+ P K ++P Sbjct: 378 TFAHGVISENIGGERRTIWPSANRAPDTKPVWP 410 >ref|YP_995692.1| extracellular ligand-binding receptor [Verminephrobacter eiseniae EF01-2] gb|ABM56674.1| Extracellular ligand-binding receptor [Verminephrobacter eiseniae EF01-2] Length = 421 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 144/378 (38%), Positives = 208/378 (55%), Gaps = 14/378 (3%) Query: 3 KSLISLATMVAWGSMAL--AGVASAQVKEVKIGYLLPLTADNAPQGQQSKRAVDMAVEEI 60 K +L T+VA GSM L +G A AQ VKIG +LPL+ +A G Q++ V AVE+I Sbjct: 6 KRRATLRTIVAAGSMLLVVSGNAGAQAI-VKIGCVLPLSGGSAALGNQTRVGVMAAVEQI 64 Query: 61 NASGGIKALGGAKLKIIYADTQSKPQVAVQEAERLISQEKVDFLAGAYNSGVTLPASEVA 120 NA+GGIKA+GGAKL+ ++ D+QSK V V E ERLI +E V L GA+NS VT PA+E+A Sbjct: 65 NAAGGIKAMGGAKLQALFGDSQSKADVGVSETERLIQRENVAVLCGAFNSAVTFPATELA 124 Query: 121 ERYKKVWWTPVSSDDSITNRPGFKYVFRLAEKTSMRIVAQLDFIQAMAKQKNVPIKTVAL 180 ER K W + D IT R GF+YVFR+ K + QLD + +AK+ ++ +AL Sbjct: 125 ERNKTPWVVVGAVKDEITER-GFRYVFRINNKATYDAREQLDAMALLAKETGKSVQRLAL 183 Query: 181 VYENSGYGQGAALQWRKLVPQQGWKIVLDEPFDPKTTDPSPVITKVKAAKADIVLLANSF 240 YE+ +G+ A RKL ++ I+LDEP P D + + K+++AK D ++LA + Sbjct: 184 FYESGDWGRSHAANIRKLAAERKIGIILDEPAPPNQVDFTSQLLKIRSAKPDALILA-LY 242 Query: 241 MPAAVMMAKSFKEQGVKPK-AFFATSAAHSDPDYLKNAGDAALGV--FDVSGWEPDV--- 294 P ++ + EQ + + DP + A DA++ F W+ D+ Sbjct: 243 TPDHLLFTRQLAEQRLDLTFGVHSAGGGAEDPSFYA-AIDASMTAYYFVQEDWQVDILDT 301 Query: 295 -NRPFSKDVAKKFQDKYGLLLNNETAKEYAGMYVVKDVLERAASTDPEKVRNAFAATDLK 353 P D ++ + G ++ A A YV+ D LERA S + +K+R+A AATDL Sbjct: 302 NQDPLLLDADRRARALLGYGMSASVALGLAATYVIGDALERAGSAERDKLRDAIAATDLS 361 Query: 354 EGMTQIYS-NRVHFDSTG 370 G R+ FDS G Sbjct: 362 SGPALFTGYQRIKFDSAG 379