BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0077.p (236 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_879297.1| putative dehydratase/racemase [Bordetella pertu... 207 1e-51 ref|NP_887014.1| dehydratase/racemase [Bordetella bronchiseptica... 205 4e-51 ref|NP_882815.1| putative dehydratase/racemase [Bordetella parap... 205 5e-51 ref|YP_004127822.1| dehydratase/racemase [Alicycliphilus denitri... 204 7e-51 ref|ZP_02190251.1| putative dehydratase/racemase [alpha proteoba... 177 1e-42 >ref|NP_879297.1| putative dehydratase/racemase [Bordetella pertussis Tohama I] emb|CAE44766.1| putative dehydratase/racemase [Bordetella pertussis Tohama I] gb|AEE65920.1| putative dehydratase/racemase [Bordetella pertussis CS] Length = 410 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 100/152 (65%), Positives = 120/152 (78%), Gaps = 3/152 (1%) Query: 1 MNYGLLQGARVIESSAFIAAPLAGLALAQLGADVIRVDLPGGGIDYKRLPLSPAGRSLYW 60 MN L+G RVIESSAFIAAPLAGL LAQ GA+VIR+D+ GGGIDY+R+P P G SLYW Sbjct: 1 MNLDFLKGVRVIESSAFIAAPLAGLTLAQFGAEVIRLDMTGGGIDYERMPRMPGGTSLYW 60 Query: 61 TGLNKGKRSLAIDFRRPEGKELVQELVTRADTGQTHGGMLLTNIGTTWLSHALLAAKRPD 120 TGLNK KRS+A+D R+PEG++L ++LV G+LLTNIG +WLSHA LA RPD Sbjct: 61 TGLNKQKRSVALDLRKPEGRDLARKLVC---APGPDAGILLTNIGVSWLSHAALAEGRPD 117 Query: 121 LISCTIEGNPDGTTAVDYTVNCAAGFPFMTGD 152 +I+CTIEGN DG++AVDYTVNCA G+P TGD Sbjct: 118 VITCTIEGNADGSSAVDYTVNCATGYPHATGD 149 >ref|NP_887014.1| dehydratase/racemase [Bordetella bronchiseptica RB50] emb|CAE30963.1| putative dehydratase/racemase [Bordetella bronchiseptica RB50] Length = 410 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 100/152 (65%), Positives = 119/152 (78%), Gaps = 3/152 (1%) Query: 1 MNYGLLQGARVIESSAFIAAPLAGLALAQLGADVIRVDLPGGGIDYKRLPLSPAGRSLYW 60 MN L+G RVIESSAFIAAPLAGL LAQ GA+VIR+D+ GGGIDY+R+P P G SLYW Sbjct: 1 MNLDFLKGVRVIESSAFIAAPLAGLTLAQFGAEVIRLDMAGGGIDYERMPRMPGGTSLYW 60 Query: 61 TGLNKGKRSLAIDFRRPEGKELVQELVTRADTGQTHGGMLLTNIGTTWLSHALLAAKRPD 120 TGLNK KRS+A+D R+PEG++L ++LV G+LLTNIG WLSHA LA RPD Sbjct: 61 TGLNKQKRSVALDLRKPEGRDLARKLVC---APGPDAGILLTNIGVPWLSHAALAEGRPD 117 Query: 121 LISCTIEGNPDGTTAVDYTVNCAAGFPFMTGD 152 +I+CTIEGN DG++AVDYTVNCA G+P TGD Sbjct: 118 VITCTIEGNADGSSAVDYTVNCATGYPHATGD 149 >ref|NP_882815.1| putative dehydratase/racemase [Bordetella parapertussis 12822] emb|CAE36047.1| putative dehydratase/racemase [Bordetella parapertussis] Length = 410 Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 100/152 (65%), Positives = 119/152 (78%), Gaps = 3/152 (1%) Query: 1 MNYGLLQGARVIESSAFIAAPLAGLALAQLGADVIRVDLPGGGIDYKRLPLSPAGRSLYW 60 MN L+G RVIESSAFIAAPLAGL LAQ GA+VIR+D+ GGGIDY+R+P P G SLYW Sbjct: 1 MNLDFLKGVRVIESSAFIAAPLAGLTLAQFGAEVIRLDMTGGGIDYERMPRMPDGTSLYW 60 Query: 61 TGLNKGKRSLAIDFRRPEGKELVQELVTRADTGQTHGGMLLTNIGTTWLSHALLAAKRPD 120 TGLNK KRS+A+D R+PEG++L ++LV G+LLTNIG WLSHA LA RPD Sbjct: 61 TGLNKQKRSVALDLRKPEGRDLARKLVC---APGPDAGILLTNIGVPWLSHAALAEGRPD 117 Query: 121 LISCTIEGNPDGTTAVDYTVNCAAGFPFMTGD 152 +I+CTIEGN DG++AVDYTVNCA G+P TGD Sbjct: 118 VITCTIEGNADGSSAVDYTVNCATGYPHATGD 149 >ref|YP_004127822.1| dehydratase/racemase [Alicycliphilus denitrificans BC] ref|YP_004387154.1| putative dehydratase/racemase [Alicycliphilus denitrificans K601] gb|ADV00935.1| putative dehydratase/racemase [Alicycliphilus denitrificans BC] gb|AEB83638.1| putative dehydratase/racemase [Alicycliphilus denitrificans K601] Length = 415 Score = 204 bits (520), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 104/155 (67%), Positives = 120/155 (77%), Gaps = 7/155 (4%) Query: 1 MNYGLLQGARVIESSAFIAAPLAGLALAQLGADVIRVDLPGGGIDYKRLPLSPA----GR 56 M Y L RVIESSAFIAAPLAGL L+Q GA+VIRVD+ GGGIDY R+P P GR Sbjct: 1 MTYPFLDNLRVIESSAFIAAPLAGLTLSQYGAEVIRVDMIGGGIDYGRMPRMPQADGRGR 60 Query: 57 SLYWTGLNKGKRSLAIDFRRPEGKELVQELVTRADTGQTHGGMLLTNIGTTWLSHALLAA 116 SLYWT LNKGKRS+AID RRP+G+ELVQ L T GG+LLTNIGT WL+H +LAA Sbjct: 61 SLYWTALNKGKRSIAIDLRRPQGRELVQALAT---APGPRGGVLLTNIGTPWLAHEVLAA 117 Query: 117 KRPDLISCTIEGNPDGTTAVDYTVNCAAGFPFMTG 151 KR D+I+CTIEGN DG+TA+DYTVNCA G+P +TG Sbjct: 118 KRADVITCTIEGNSDGSTALDYTVNCATGYPAVTG 152 >ref|ZP_02190251.1| putative dehydratase/racemase [alpha proteobacterium BAL199] gb|EDP62974.1| putative dehydratase/racemase [alpha proteobacterium BAL199] Length = 408 Score = 177 bits (449), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 97/156 (62%), Positives = 111/156 (71%), Gaps = 5/156 (3%) Query: 3 YGLLQGARVIESSAFIAAPLAGLALAQLGADVIRVDLPGGGIDYKRLPL-SPAGRSLYWT 61 +G L RV+E SAF+AAPLAGL LAQ GADVIR D PGGG+DY+R PL S +GRSL+WT Sbjct: 2 FGPLGHLRVVEGSAFVAAPLAGLTLAQAGADVIRFDPPGGGLDYRRWPLASASGRSLFWT 61 Query: 62 GLNKGKRSLAIDFRRPEGKELVQELVTRADTGQTHGGMLLTNI-GTTWLSHALLAAKRPD 120 GLNKGKRSL +D RRPEG+ELVQ LV G GG+LLTN G WLS L A+R D Sbjct: 62 GLNKGKRSLCVDIRRPEGRELVQSLVAAPGDG---GGLLLTNFAGLPWLSDEALRARRDD 118 Query: 121 LISCTIEGNPDGTTAVDYTVNCAAGFPFMTGDATRE 156 +I I GN DG+ AVDYT+N A G P MTG RE Sbjct: 119 VIKLEITGNHDGSNAVDYTINPAVGLPTMTGTGGRE 154