BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0076.p (313 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_882813.1| LysR family transcriptional regulator [Bordetel... 319 4e-85 ref|NP_879299.1| LysR family transcriptional regulator [Bordetel... 318 1e-84 gb|EGP43671.1| LysR family transcriptional regulator [Achromobac... 220 3e-55 ref|YP_004144541.1| LysR family transcriptional regulator [Mesor... 188 1e-45 ref|ZP_01749132.1| transcriptional regulatory protein [Roseobact... 174 1e-41 >ref|NP_882813.1| LysR family transcriptional regulator [Bordetella parapertussis 12822] ref|NP_887012.1| LysR family transcriptional regulator [Bordetella bronchiseptica RB50] emb|CAE36045.1| LysR-family transcriptional regulator [Bordetella parapertussis] emb|CAE30961.1| LysR-family transcriptional regulator [Bordetella bronchiseptica RB50] Length = 320 Score = 319 bits (817), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 161/303 (53%), Positives = 221/303 (72%), Gaps = 6/303 (1%) Query: 2 KPSPKLLANVNFKLLQTFLLVADQSSFRIAAEKSFRSPSAVSAQIRQLEAQLGVALFHRT 61 K + L N+N KLL TF+LVA+ SFR AAE S RS +AV+ QI+QLEAQLGV LFHRT Sbjct: 3 KEKSRPLPNINLKLLHTFMLVAEHCSFRQAAELSHRSQAAVTGQIKQLEAQLGVDLFHRT 62 Query: 62 TRNVRLTTEGEQLLDCAQRALMEVESGLRKIQESADIRRGRVSISCSPTIAETRLARVLA 121 TR VRLT EG QLL+ A+RA+ E+E+GLR+IQE+ D++RGR+ +SCS T++ TRLA +LA Sbjct: 63 TRQVRLTAEGAQLLESARRAVHEMENGLRQIQETVDLKRGRIFLSCSTTVSSTRLAPILA 122 Query: 122 AFEKEYPGIEVSVRELTSMALFLX------DFGIGPSIDTMEFHFDEVMDDPLFALVPKR 175 AFE++YPG+EV VRELTS +F DFGIGP ++ EF F+ ++ + L+A+VP+ Sbjct: 123 AFERDYPGVEVFVRELTSGDMFETVRREEADFGIGPIMELPEFDFEPILTENLYAVVPRN 182 Query: 176 FITTAKRSISLATLTNMPLLLLSPATALRGMLETALLERNLAFSTRYQFTQAQTLISMAT 235 I+LA L +MPLLLL+P TALR +++ R L +T++QF+QAQTLISMAT Sbjct: 183 LFPDTAEQITLARLASMPLLLLNPGTALRALIDDTARSRGLTINTKFQFSQAQTLISMAT 242 Query: 236 AGLGAAILPRVALPARVDASTHVLRIVNPQLTRQVSIITMRGQKLSPASLRLVELLKQLM 295 AGLGAA+LP + LPA+ VL I +P++TR V+I+ +R +KL+PA+ RL +L++ L+ Sbjct: 243 AGLGAAVLPAMVLPAKPHKDVQVLPIASPRMTRDVAIVRLRHRKLTPAAARLAQLVRDLI 302 Query: 296 PDP 298 P Sbjct: 303 HGP 305 >ref|NP_879299.1| LysR family transcriptional regulator [Bordetella pertussis Tohama I] emb|CAE44768.1| LysR-family transcriptional regulator [Bordetella pertussis Tohama I] gb|AEE65922.1| LysR family transcriptional regulator [Bordetella pertussis CS] Length = 320 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 160/298 (53%), Positives = 218/298 (73%), Gaps = 6/298 (2%) Query: 8 LANVNFKLLQTFLLVADQSSFRIAAEKSFRSPSAVSAQIRQLEAQLGVALFHRTTRNVRL 67 L N+N KLL TF+LVA+ SFR AAE S RS +AV+ QI+QLEAQLGV LFHRTTR VRL Sbjct: 9 LPNINLKLLHTFMLVAEHCSFRQAAELSHRSQAAVTGQIKQLEAQLGVDLFHRTTRQVRL 68 Query: 68 TTEGEQLLDCAQRALMEVESGLRKIQESADIRRGRVSISCSPTIAETRLARVLAAFEKEY 127 T EG QLL+ A+RA E+E+GLR+IQE+ D++RGR+ +SCS T++ TRLA +LAAFE++Y Sbjct: 69 TAEGAQLLESARRAAHEMENGLRQIQETVDLKRGRIFLSCSTTVSSTRLAPILAAFERDY 128 Query: 128 PGIEVSVRELTSMALF------LXDFGIGPSIDTMEFHFDEVMDDPLFALVPKRFITTAK 181 PG+EV VRELTS +F DFGIGP ++ EF F+ ++ + L+A+VP+ Sbjct: 129 PGVEVFVRELTSGDMFETVRREQADFGIGPIMELPEFDFEPILTENLYAVVPRNLFPDTA 188 Query: 182 RSISLATLTNMPLLLLSPATALRGMLETALLERNLAFSTRYQFTQAQTLISMATAGLGAA 241 I+LA L +MPLLLL+P TALR +++ R L + ++QF+QAQTLISMATAGLGAA Sbjct: 189 EQITLARLASMPLLLLNPGTALRALIDDTARSRGLTINAKFQFSQAQTLISMATAGLGAA 248 Query: 242 ILPRVALPARVDASTHVLRIVNPQLTRQVSIITMRGQKLSPASLRLVELLKQLMPDPL 299 +LP + LPA+ VL I +P++TR V+I+ +R +KL+PA+ RL +L++ L+ PL Sbjct: 249 VLPAMVLPAKPHKDVQVLPIASPRMTRDVAIVRLRHRKLTPAAARLAQLVRDLIHGPL 306 >gb|EGP43671.1| LysR family transcriptional regulator [Achromobacter xylosoxidans AXX-A] Length = 300 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 129/291 (44%), Positives = 193/291 (66%), Gaps = 7/291 (2%) Query: 9 ANVNFKLLQTFLLVADQSSFRIAAEKSFRSPSAVSAQIRQLEAQLGVALFHRTTRNVRLT 68 +++NF LL+TFLL+A+ SFR A+E+ RS SA+SAQI+ LEAQ+G LFHRTTR+V+LT Sbjct: 3 SDINFNLLRTFLLIAETRSFRGASEQVHRSQSAISAQIKLLEAQVGAELFHRTTRSVQLT 62 Query: 69 TEGEQLLDCAQRALMEVESGLRKIQESADIRRGRVSISCSPTIAETRLARVLAAFEKEYP 128 G+QL D A+R + EVE+G+R+++E+ ++ G V+++ +P A L VLA FE YP Sbjct: 63 AAGKQLFDAARRGVREVEAGVREVRETLALQAGHVAVAATPIAAAALLPPVLARFEALYP 122 Query: 129 GIEVSVRELTS---MALFL---XDFGIGPSIDTMEFHFDEVMDDPLFALVPKRFITTAKR 182 G+ +SVRE S A L DFG+ P E F+ ++ + + AL+ R A Sbjct: 123 GVGMSVRERQSADVQAQVLRGEVDFGVVPGPMGAECDFEPLVAEEICALMAPRLCPEAAD 182 Query: 183 SISLATLTNMPLLLLSPATALRGMLETALLERNLAFSTRYQFTQAQTLISMATAGLGAAI 242 ++L + +PLLLLS AT+LR +L+ A + + +Y+ QA TLI+MA AGLG AI Sbjct: 183 PMALKDVARLPLLLLSNATSLRILLDQAATRARVRLTPKYECIQAHTLIAMAAAGLGVAI 242 Query: 243 LPRVALPARVDASTHVLRIVNPQLTRQVSIITMRGQKLSPASLRLVELLKQ 293 LPR+ALPAR + R+ +P LTRQ+ ++T+RG++L+PA+ +L LL++ Sbjct: 243 LPRLALPARPPKGLRICRL-SPPLTRQMGLLTLRGRRLAPAAEKLASLLRE 292 >ref|YP_004144541.1| LysR family transcriptional regulator [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV14491.1| LysR substrate-binding protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 298 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 112/292 (38%), Positives = 171/292 (58%), Gaps = 9/292 (3%) Query: 8 LANVNFKLLQTFLLVADQSSFRIAAEKSFRSPSAVSAQIRQLEAQLGVALFHRTTRNVRL 67 + +VN KLLQTFLL A+ SFR AAE+S RSPSAVS QIR LE Q+G++LF RT + L Sbjct: 1 MPSVNLKLLQTFLLAAENGSFRRAAEESNRSPSAVSMQIRDLEEQIGISLFIRTAQRASL 60 Query: 68 TTEGEQLLDCAQRALMEVESGLRKIQESADIRRGRVSISCSPTIAETRLARVLAAFEKEY 127 T EG+ L + + +V++ L ++ E A R+G+V I+C+PT+A +RL +LA F+ Y Sbjct: 61 TPEGQILFEEIANVMSQVQTSLDRLTEVAARRKGKVQIACAPTLAASRLGDILATFKLRY 120 Query: 128 PGIEVSVRELTSMALF------LXDFGIGPSIDTM-EFHFDEVMDDPLFALVPKRFITTA 180 P V V E A +F IGP + + +F F+ ++DDPL A +P I Sbjct: 121 PRSIVEVIESPPQAALGLLQQQEVEFYIGPELPNLTDFQFESILDDPLMACIPTE-IYGG 179 Query: 181 KRSISLATLTNMPLLLLSPATALRGMLETALLERNLAFSTRYQFTQAQTLISMATAGLGA 240 ++ + L+ L PL+LLS TA+RG+++ + F +Y+ AQT +++ +GLG Sbjct: 180 EKKLLLSDLLRYPLILLSRKTAVRGLVDRLTAAEGIEFKPQYEVESAQTAVALVCSGLGV 239 Query: 241 AILPRVALPARVDASTHVLRIVNPQLTRQVSIITMRGQKLSPASLRLVELLK 292 ++P +A+ +R D V+ I + R V IIT RG S +L+ L++ Sbjct: 240 CVVPGIAI-SRNDERMRVVPIDHRDAHRSVGIITARGYVHHSFSEQLMNLIR 290 >ref|ZP_01749132.1| transcriptional regulatory protein [Roseobacter sp. CCS2] gb|EBA13115.1| transcriptional regulatory protein [Roseobacter sp. CCS2] Length = 300 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 101/292 (34%), Positives = 172/292 (58%), Gaps = 8/292 (2%) Query: 8 LANVNFKLLQTFLLVADQSSFRIAAEKSFRSPSAVSAQIRQLEAQLGVALFHRTTRNVRL 67 ++++N KLLQ+FLLVA SFR AAE + RS +A+S QI++LE Q+G+ LF R + V L Sbjct: 1 MSDINLKLLQSFLLVAQHGSFRRAAETARRSTAAISMQIKELEDQVGMRLFVRQPKKVTL 60 Query: 68 TTEGEQLLDCAQRALMEVESGLRKIQESADIRRGRVSISCSPTIAETRLARVLAAFEKEY 127 T G L + RA+ +++ G + + + A +R+ V+I+C+PT+A R+ VL F + + Sbjct: 61 TPNGHLLYEKTARAMRDIDDGFQSLSDIATLRQSAVTIACAPTLAPKRVGGVLTTFRRRF 120 Query: 128 PGIEVSVRE---LTSMALF---LXDFGIGPSIDTME-FHFDEVMDDPLFALVPKRFITTA 180 P V + E T++ + + +F +GPS+ ++ F F+++ D+PL A +P F Sbjct: 121 PDSSVRLIEAPPATALEILERQVAEFYVGPSVSNLKTFTFEKLTDEPLRACIPPEF-DRG 179 Query: 181 KRSISLATLTNMPLLLLSPATALRGMLETALLERNLAFSTRYQFTQAQTLISMATAGLGA 240 +R+IS L +P++LL +TA+R +++ L +NL+ + Y+ A T +S A+AGLG Sbjct: 180 QRAISFEDLKEVPIILLDRSTAIRTLIDDILHRKNLSLNVAYELQNAFTALSFASAGLGV 239 Query: 241 AILPRVALPARVDASTHVLRIVNPQLTRQVSIITMRGQKLSPASLRLVELLK 292 A+LP +A+ V+ P+ R V II +G S +L+ L++ Sbjct: 240 AMLPSIAIEMAEFDGFRVVPFREPEAARSVGIIAEKGYVQHNYSEQLMRLIR 291