BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0075.p (412 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_887011.1| hypothetical protein BB0461 [Bordetella bronchi... 535 e-150 ref|NP_882812.1| hypothetical protein BPP0461 [Bordetella parape... 532 e-149 ref|NP_879300.1| hypothetical protein BP0438 [Bordetella pertuss... 531 e-149 ref|YP_001511153.1| L-carnitine dehydratase/bile acid-inducible ... 461 e-127 ref|ZP_06414135.1| Formyl-CoA transferase [Frankia sp. EUN1f] >g... 458 e-127 >ref|NP_887011.1| hypothetical protein BB0461 [Bordetella bronchiseptica RB50] emb|CAE30960.1| conserved hypothetical protein [Bordetella bronchiseptica RB50] Length = 417 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 257/395 (65%), Positives = 318/395 (80%), Gaps = 2/395 (0%) Query: 20 ALSNLRVLDIATFVAAPFCGTILADFGAEVIKVEQPSGGDALRKFGTITECGDSLVWLSE 79 ALS LRVLDIATF+AAPFCGTI+ADFGA+VIK+EQP GGD+LRKFGT + CGD+ +W+SE Sbjct: 23 ALSGLRVLDIATFLAAPFCGTIMADFGADVIKIEQPKGGDSLRKFGTPSPCGDTYMWMSE 82 Query: 80 ARNKKAITLDLRQPQGAQMFRELVAQSDIVLENFRPGTLEKWGLGFEELRAINPKLIMLR 139 ARNK+ +TLDLR P+GA +F+ELV +SD+VLENFRPGTLEKWGLG++ L +NP LI+LR Sbjct: 83 ARNKRFVTLDLRTPEGAALFKELVRESDVVLENFRPGTLEKWGLGYDVLSELNPGLILLR 142 Query: 140 ISAYGQTGPKSGEPGFARIAHAFAGLSWLAGEADGPPVVPGSTSMADYVSGMWGAIGVLT 199 +SAYGQ GPK EPGFARIAHAF GL+ LAGE DGPPVVPGSTS+ADY+SG+WGAIGVLT Sbjct: 143 VSAYGQDGPKREEPGFARIAHAFGGLAHLAGEPDGPPVVPGSTSLADYISGLWGAIGVLT 202 Query: 200 ALRERDRSGIGQFIDLGLYESVFRLLDEIAPAYAKYGTVRERMGADTVNVVPHSHYRTGS 259 AL+ R+ +G+GQ +D+GLYESVFRLLDEIAP YA G VR R+GAD NV PHSHY+T Sbjct: 203 ALQARNHTGLGQVVDIGLYESVFRLLDEIAPVYAATGFVRRRLGADVPNVAPHSHYQTRC 262 Query: 260 GEWVALACTNDKMFERLAVVMGQPELA--MQYPTSAVRVENRALINKLVGDWIGSKQLAD 317 G+WVA+AC+N++MFERLA MG+PELA ++ T+A R ENR IN V W L Sbjct: 263 GQWVAIACSNNRMFERLASAMGKPELAGDARFATAAARAENRPAINAQVAAWSARFDLQA 322 Query: 318 VTATTSAGGVPCAQIYSIKEIFEDEQYRARGNMIRVDDPRVGELVLPAPVPRLSETPATF 377 + GVPC+++YSI++IF+DEQYRARGN++ VDDPR+G+ VLPAPVPRLS TPA F Sbjct: 323 LLDLCRDEGVPCSKVYSIEDIFQDEQYRARGNLMEVDDPRIGKTVLPAPVPRLSGTPARF 382 Query: 378 RHAGRSLGADNLDVYSQLLGMTQEQLKSAAASGVI 412 AG +LG DN V+ +LLG+ E+L + +GV+ Sbjct: 383 LRAGGALGQDNAGVFEELLGVCGERLAALRQAGVV 417 >ref|NP_882812.1| hypothetical protein BPP0461 [Bordetella parapertussis 12822] emb|CAE36044.1| conserved hypothetical protein [Bordetella parapertussis] Length = 417 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 256/395 (64%), Positives = 317/395 (80%), Gaps = 2/395 (0%) Query: 20 ALSNLRVLDIATFVAAPFCGTILADFGAEVIKVEQPSGGDALRKFGTITECGDSLVWLSE 79 ALS LRVLDIATF+AAPFCGTI+ADFGA+VIK+EQP GGD+LRKFGT + CGD+ +W+SE Sbjct: 23 ALSGLRVLDIATFLAAPFCGTIMADFGADVIKIEQPKGGDSLRKFGTPSPCGDTYMWMSE 82 Query: 80 ARNKKAITLDLRQPQGAQMFRELVAQSDIVLENFRPGTLEKWGLGFEELRAINPKLIMLR 139 ARNK+ +TLDLR P+GA +F+ELV +SD+VLENFRPGTLEKWGLG++ L +NP LI+LR Sbjct: 83 ARNKRFVTLDLRTPEGAALFKELVRESDVVLENFRPGTLEKWGLGYDVLSELNPGLILLR 142 Query: 140 ISAYGQTGPKSGEPGFARIAHAFAGLSWLAGEADGPPVVPGSTSMADYVSGMWGAIGVLT 199 +SAYGQ GPK EPGFARIAHAF GL+ LAGE D PPVVPGSTS+ADY+SG+WGAIGVLT Sbjct: 143 VSAYGQDGPKREEPGFARIAHAFGGLAHLAGEPDRPPVVPGSTSLADYISGLWGAIGVLT 202 Query: 200 ALRERDRSGIGQFIDLGLYESVFRLLDEIAPAYAKYGTVRERMGADTVNVVPHSHYRTGS 259 AL+ R+ +G+GQ +D+GLYESVFRLLDEIAP YA G VR R+GAD NV PHSHY+T Sbjct: 203 ALQARNHTGLGQVVDIGLYESVFRLLDEIAPVYAATGFVRRRLGADVPNVAPHSHYQTRC 262 Query: 260 GEWVALACTNDKMFERLAVVMGQPELA--MQYPTSAVRVENRALINKLVGDWIGSKQLAD 317 G+WVA+AC+ND+MFERLA MG+PELA ++ T+A R E+R IN V W L Sbjct: 263 GQWVAIACSNDRMFERLASAMGKPELAGDARFATAAARAESRPAINAQVAAWSARFDLQA 322 Query: 318 VTATTSAGGVPCAQIYSIKEIFEDEQYRARGNMIRVDDPRVGELVLPAPVPRLSETPATF 377 + GVPC+++YSI++IF+DEQYRARGN++ VDDPR+G+ VLPAPVPRLS TPA F Sbjct: 323 LLDLCRDEGVPCSKVYSIEDIFQDEQYRARGNLMEVDDPRIGKTVLPAPVPRLSGTPARF 382 Query: 378 RHAGRSLGADNLDVYSQLLGMTQEQLKSAAASGVI 412 AG +LG DN V+ +LLG+ E+L + +GV+ Sbjct: 383 LRAGGALGQDNAGVFEELLGVCGERLAALRQAGVV 417 >ref|NP_879300.1| hypothetical protein BP0438 [Bordetella pertussis Tohama I] emb|CAE44769.1| conserved hypothetical protein [Bordetella pertussis Tohama I] gb|AEE65923.1| hypothetical protein BPTD_0453 [Bordetella pertussis CS] Length = 417 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 256/395 (64%), Positives = 315/395 (79%), Gaps = 2/395 (0%) Query: 20 ALSNLRVLDIATFVAAPFCGTILADFGAEVIKVEQPSGGDALRKFGTITECGDSLVWLSE 79 ALS LRVLDIATF+AAPFCGTI+ADFGA+VIK+EQP GGD+LRKFGT + CGD+ +W+SE Sbjct: 23 ALSGLRVLDIATFLAAPFCGTIMADFGADVIKIEQPRGGDSLRKFGTPSPCGDTYMWMSE 82 Query: 80 ARNKKAITLDLRQPQGAQMFRELVAQSDIVLENFRPGTLEKWGLGFEELRAINPKLIMLR 139 ARNK+ +TLDLR P+GA +F+ELV +SD+VLENFRPGTLEKWGLG++ L +NP LI+LR Sbjct: 83 ARNKRFVTLDLRTPEGAALFKELVRESDVVLENFRPGTLEKWGLGYDVLSELNPGLILLR 142 Query: 140 ISAYGQTGPKSGEPGFARIAHAFAGLSWLAGEADGPPVVPGSTSMADYVSGMWGAIGVLT 199 +SAYGQ GPK EPGFARIAHAF GL+ LAGE DGPPVVPGSTS+ADY+SG+WGAIGVL Sbjct: 143 VSAYGQDGPKREEPGFARIAHAFGGLAHLAGEPDGPPVVPGSTSLADYISGLWGAIGVLM 202 Query: 200 ALRERDRSGIGQFIDLGLYESVFRLLDEIAPAYAKYGTVRERMGADTVNVVPHSHYRTGS 259 AL+ R+ +G+GQ +D+GLYESVFRLLDE+AP YA G VR R+GAD NV PHSHY+T Sbjct: 203 ALQARNHTGLGQVVDIGLYESVFRLLDELAPVYAATGFVRRRLGADVPNVAPHSHYQTRC 262 Query: 260 GEWVALACTNDKMFERLAVVMGQPELA--MQYPTSAVRVENRALINKLVGDWIGSKQLAD 317 G+WVA+AC+ND+MFERLA MG P LA ++ T+A R ENR IN LV W L Sbjct: 263 GQWVAIACSNDRMFERLASAMGAPGLAGDARFATAAARAENRQAINALVAAWSARFDLQA 322 Query: 318 VTATTSAGGVPCAQIYSIKEIFEDEQYRARGNMIRVDDPRVGELVLPAPVPRLSETPATF 377 + GVPC+++YSI++IF+DEQYRARGN++ VDDPR+G+ VLPA VPRLS TPA F Sbjct: 323 LLDLCRNEGVPCSKVYSIEDIFQDEQYRARGNLMEVDDPRIGKTVLPASVPRLSGTPARF 382 Query: 378 RHAGRSLGADNLDVYSQLLGMTQEQLKSAAASGVI 412 AG +LG DN VY +LLG+ E+L + +GV+ Sbjct: 383 LRAGGALGQDNAGVYEELLGVCGERLAALRQTGVV 417 >ref|YP_001511153.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia sp. EAN1pec] gb|ABW16247.1| L-carnitine dehydratase/bile acid-inducible protein F [Frankia sp. EAN1pec] Length = 396 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/395 (55%), Positives = 290/395 (73%), Gaps = 3/395 (0%) Query: 20 ALSNLRVLDIATFVAAPFCGTILADFGAEVIKVEQPSGGDALRKFGTITECGDSLVWLSE 79 AL +RVLD+ T++A PFC T+L +FGA++IKVE+P GD LR+FGT T+CGD+LVWLSE Sbjct: 3 ALQGVRVLDLGTYLAGPFCATVLGEFGADIIKVERPGAGDNLRRFGTDTDCGDTLVWLSE 62 Query: 80 ARNKKAITLDLRQPQGAQMFRELVAQSDIVLENFRPGTLEKWGLGFEELRAINPKLIMLR 139 +RNK+++TL+L P+G ++ REL+A +DIV+ENFRPG LE+WGLG E ++ +NP+ I+LR Sbjct: 63 SRNKRSVTLNLGDPRGLEILRELIATADIVIENFRPGVLERWGLGPEVIQELNPRAILLR 122 Query: 140 ISAYGQTGPKSGEPGFARIAHAFAGLSWLAGEADGPPVVPGSTSMADYVSGMWGAIGVLT 199 +SAYGQ+GP PGFARIAHAF+GL++LAGE G PV PGSTS+ADY++G++G IGVL Sbjct: 123 VSAYGQSGPNRDLPGFARIAHAFSGLAYLAGEPGGTPVTPGSTSLADYMTGLYGVIGVLM 182 Query: 200 ALRERDRSGIGQFIDLGLYESVFRLLDEIAPAYAKYGTVRERMGADTVNVVPHSHYRTGS 259 ALR R+ +G GQ +DL LYE++FR LDEIAPAY ++G VRERMGADTVNV+PHSHYRT Sbjct: 183 ALRARESTGKGQVVDLALYETIFRALDEIAPAYQQFGFVRERMGADTVNVLPHSHYRTKD 242 Query: 260 GEWVALACTNDKMFERLAVVMGQPELA--MQYPTSAVRVENRALINKLVGDWIGSKQLAD 317 W+A+AC+ND MF RLA M +PELA + A R+ R L+N+LVG W+GS + Sbjct: 243 DRWIAIACSNDDMFARLARAMERPELADEDELGPKAKRLAARDLVNELVGGWVGSLPCDE 302 Query: 318 VTATTSAGGVPCAQIYSIKEIFEDEQYRARGNMIRVDDPRVGELVLPAPVPRLSETPATF 377 V A VP Q+YSI +IF+D QY+ R I V++ R+G L +P +P LSETP Sbjct: 303 VLARCKQAQVPAGQLYSIADIFDDPQYKHR-ETITVEESRIGPLAVPGVIPALSETPGEI 361 Query: 378 RHAGRSLGADNLDVYSQLLGMTQEQLKSAAASGVI 412 R G LGA DV ++LL T E + A GVI Sbjct: 362 RWLGPELGAHTDDVLTELLNRTPEDIARLRADGVI 396 >ref|ZP_06414135.1| Formyl-CoA transferase [Frankia sp. EUN1f] gb|EFC83070.1| Formyl-CoA transferase [Frankia sp. EUN1f] Length = 396 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 220/395 (55%), Positives = 287/395 (72%), Gaps = 3/395 (0%) Query: 20 ALSNLRVLDIATFVAAPFCGTILADFGAEVIKVEQPSGGDALRKFGTITECGDSLVWLSE 79 AL LRVLD+ T++A PFC T+L +FGA+VIKVE+P GD LR+FGT T+CGD+LVWLSE Sbjct: 3 ALQGLRVLDLGTYLAGPFCATVLGEFGADVIKVERPRTGDNLRRFGTETDCGDTLVWLSE 62 Query: 80 ARNKKAITLDLRQPQGAQMFRELVAQSDIVLENFRPGTLEKWGLGFEELRAINPKLIMLR 139 +RNK+++TL+L P+G ++ REL+ D+V+ENFRPG +E+WGLG EE+ +NP+ ++LR Sbjct: 63 SRNKRSVTLNLADPRGIEILRELITTVDVVIENFRPGVMERWGLGPEEIAELNPRAVLLR 122 Query: 140 ISAYGQTGPKSGEPGFARIAHAFAGLSWLAGEADGPPVVPGSTSMADYVSGMWGAIGVLT 199 +SAYGQ+GP PGFARIAHAF+GL++LAG DGPPV PGSTS+ADY++G++G IGVL Sbjct: 123 VSAYGQSGPNRELPGFARIAHAFSGLAYLAGMPDGPPVTPGSTSLADYMTGLYGVIGVLM 182 Query: 200 ALRERDRSGIGQFIDLGLYESVFRLLDEIAPAYAKYGTVRERMGADTVNVVPHSHYRTGS 259 ALR R+ +G GQ +DL LYESVFR LDEIAPAY ++G VRERMGADTVNV+PHSHY+T Sbjct: 183 ALRARESTGKGQVVDLALYESVFRALDEIAPAYQQFGFVRERMGADTVNVLPHSHYQTKD 242 Query: 260 GEWVALACTNDKMFERLAVVMGQPEL--AMQYPTSAVRVENRALINKLVGDWIGSKQLAD 317 W+A+AC+ND MF RLA M +PEL A Q A R+ R L+N LVG+W+GS + Sbjct: 243 DHWIAIACSNDDMFARLARAMERPELADADQLGPKANRLAARGLVNSLVGEWVGSLPCEE 302 Query: 318 VTATTSAGGVPCAQIYSIKEIFEDEQYRARGNMIRVDDPRVGELVLPAPVPRLSETPATF 377 V A VP Q+YSI +IF+D QYR R I V++ R+G L +P +P LS+TP Sbjct: 303 VLARCRQAQVPAGQLYSIADIFDDPQYRHR-QTITVEESRIGPLAVPGVIPALSDTPGEI 361 Query: 378 RHAGRSLGADNLDVYSQLLGMTQEQLKSAAASGVI 412 R G LGA V ++LL ++ A GVI Sbjct: 362 RWLGPELGAHTDAVLTELLRREPAEISQLRADGVI 396