BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0051.p (512 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_167755.1| carbamoyl-phosphate synthase, putative [Ruegeri... 545 e-153 ref|YP_004418397.1| carbamoyl-phosphate synthase, putative [Pusi... 511 e-142 ref|YP_003692318.1| methylcrotonoyl-CoA carboxylase [Starkeya no... 508 e-141 ref|YP_004418201.1| carbamoyl-phosphate synthase, putative [Pusi... 506 e-141 ref|ZP_01076897.1| carbamoyl-phosphate synthase, putative [Marin... 501 e-139 >ref|YP_167755.1| carbamoyl-phosphate synthase, putative [Ruegeria pomeroyi DSS-3] gb|AAV95790.1| carbamoyl-phosphate synthase, putative [Ruegeria pomeroyi DSS-3] Length = 456 Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust. Identities = 269/454 (59%), Positives = 335/454 (73%), Gaps = 1/454 (0%) Query: 43 VKRILVANRGEIACRIIRAAKGLGIETIAVYSDADADSLHCEMADITVRIGAAPAAQSYL 102 +KR+L+ANRGEIACRIIRAA+ LGIET+AVYS+ADA +LH EMAD V +G PAAQSYL Sbjct: 1 MKRLLIANRGEIACRIIRAARSLGIETVAVYSEADAGALHVEMADQAVSLGPPPAAQSYL 60 Query: 103 NVDAVLEAGLQHGAQGVHPGYGFLSENTAFARAAEKNGIAWIGPTPETIEDMGDKHRARS 162 DA++EA GA VHPGYGFLSE+ +FARA +G+ WIGP PETI DMGDK RAR+ Sbjct: 61 RQDALIEAARAKGAGAVHPGYGFLSESASFARAVVNSGLTWIGPAPETIADMGDKGRARA 120 Query: 163 IAESCGVPVLPGSRAFLPGESVELIVQEAARVGFPLLVKAAGGGGGIGMKLVDDPSALVA 222 +A GVPVLPGS +F G +++ + + A VGFPLLVKA GGGGIGM+ VDDP+ L Sbjct: 121 LAIKAGVPVLPGSDSFAEG-ALDGVEEAGATVGFPLLVKATAGGGGIGMQRVDDPAKLRK 179 Query: 223 AVASTQSQALKTFNDASVYLERYVPRARHIEVQVFGYGDGSVVHLFERECSVQRRFQKII 282 TQS A ++F D SV+LER++ RARHIE+QVFG+GDG VHL ER+CS+QRRFQK++ Sbjct: 180 IAERTQSAAARSFGDGSVFLERFIARARHIEIQVFGFGDGRAVHLHERDCSLQRRFQKVV 239 Query: 283 EESPAPNLPTQVLEKMFAAAVSLSAGQRYRGAGTVEFILDASTDEFFFLEMNTRIQVEHG 342 EESPAP L ++ +M A +L++ Y GAGTVEF++DA T EFFFLEMNTRIQVEH Sbjct: 240 EESPAPGLDRAIVARMGEVACALASAVNYSGAGTVEFVMDADTGEFFFLEMNTRIQVEHP 299 Query: 343 VTEATTGWDLVQSQILLAAGQLQPISQSAISRTGAAVECRVYAENPQKNFLPSPGPLERY 402 V+E TG DLV +Q+ LAAG + + +G AVECR+YAENP K FLPSPG LER+ Sbjct: 300 VSEMVTGTDLVAAQLRLAAGDDIHDDLADRAPSGHAVECRLYAENPAKKFLPSPGTLERF 359 Query: 403 AFPAALDGLRVDTGVRQGDSITPFYDPMIAKIITSGMNRSVALERMQEVLRMTEITGIRH 462 + P +DG+RVDTGVR+GD+ITPFYDPMIAKII G +R ALER+ LR T + G+ Sbjct: 360 SLPDGMDGVRVDTGVREGDTITPFYDPMIAKIIAWGESRDEALERINAALRATHVEGLAT 419 Query: 463 NIDFLLQVLQHPQFVAGMVDTHFVERERQMLLSA 496 N DFL+ + +P F +G V T F++ LLSA Sbjct: 420 NRDFLIAITSNPTFRSGEVWTGFIDTHLDALLSA 453 >ref|YP_004418397.1| carbamoyl-phosphate synthase, putative [Pusillimonas sp. T7-7] gb|AEC21773.1| carbamoyl-phosphate synthase, putative [Pusillimonas sp. T7-7] Length = 456 Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust. Identities = 257/454 (56%), Positives = 330/454 (72%), Gaps = 2/454 (0%) Query: 43 VKRILVANRGEIACRIIRAAKGLGIETIAVYSDADADSLHCEMADITVRIGAAPAAQSYL 102 +K++L+ANRGEIACRII++ K LGI+T+AVYS+ DADS H AD + +G A++SYL Sbjct: 1 MKKVLIANRGEIACRIIQSCKRLGIQTVAVYSEVDADSKHVIEADESYALGGKSASESYL 60 Query: 103 NVDAVLEAGLQHGAQGVHPGYGFLSENTAFARAAEKNGIAWIGPTPETIEDMGDKHRARS 162 D +LEA L+ A G+HPGYGFL+E+ FAR E GI W+GPTP +IE MGDK RARS Sbjct: 61 RTDRILEAALRSNADGLHPGYGFLAESAEFARQVEDAGIVWVGPTPASIESMGDKERARS 120 Query: 163 IAESCGVPVLPGSRAFLPGESVELIVQEAARVGFPLLVKAAGGGGGIGMKLVDDPSALVA 222 +AE+ VPVLPGS F+ G++ +++EAARVGFPLLVKAA GGGGIGM+ VD L++ Sbjct: 121 LAEAACVPVLPGSIRFVVGDTAR-VLEEAARVGFPLLVKAAAGGGGIGMRRVDREEDLLS 179 Query: 223 AVASTQSQALKTFNDASVYLERYVPRARHIEVQVFGYGDGSVVHLFERECSVQRRFQKII 282 VA+TQ A ++F D +VYLERY+ ARH+EVQVFG+GDG+ +HL ER+CSVQRRFQK+I Sbjct: 180 VVAATQHMAERSFGDGTVYLERYISLARHVEVQVFGFGDGNAIHLHERDCSVQRRFQKVI 239 Query: 283 EESPAPNLPTQVLEKMFAAAVSLSAGQRYRGAGTVEFILDASTDEFFFLEMNTRIQVEHG 342 EESPAP +P V E+M A++SL YR AGT+EF++DA T +FFFLEMNTRIQVEH Sbjct: 240 EESPAPGIPVAVRERMLHASLSLCRQGHYRSAGTIEFVMDAKTFDFFFLEMNTRIQVEHP 299 Query: 343 VTEATTGWDLVQSQILLAAGQ-LQPISQSAISRTGAAVECRVYAENPQKNFLPSPGPLER 401 VTE TG D+V Q+ LAAGQ Q+ + G ++ECR+YAE P KNFLPS G LER Sbjct: 300 VTEMITGVDIVDMQLRLAAGQPCAVFDQAEVRAVGHSIECRLYAERPAKNFLPSTGVLER 359 Query: 402 YAFPAALDGLRVDTGVRQGDSITPFYDPMIAKIITSGMNRSVALERMQEVLRMTEITGIR 461 +FPA + R+D GVR+GD IT FYDPMI KI+ G +R A+ RM EVL EI G++ Sbjct: 360 LSFPARDETFRLDCGVREGDKITHFYDPMIGKIVCFGADRLSAIRRMHEVLMQIEIRGVQ 419 Query: 462 HNIDFLLQVLQHPQFVAGMVDTHFVERERQMLLS 495 N+DFL++ + H F G V T F++ R LL+ Sbjct: 420 TNLDFLIRTISHEAFKVGKVSTDFIDVWRHDLLA 453 >ref|YP_003692318.1| methylcrotonoyl-CoA carboxylase [Starkeya novella DSM 506] gb|ADH87699.1| Methylcrotonoyl-CoA carboxylase [Starkeya novella DSM 506] Length = 453 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 262/454 (57%), Positives = 325/454 (71%), Gaps = 1/454 (0%) Query: 43 VKRILVANRGEIACRIIRAAKGLGIETIAVYSDADADSLHCEMADITVRIGAAPAAQSYL 102 +K+ILVANRGEIACR+ R+++ LG+ +AVYSDADA+S H E AD +V +G APA +SYL Sbjct: 1 MKKILVANRGEIACRVFRSSRALGLSNVAVYSDADAESAHVEAADQSVGVGPAPARESYL 60 Query: 103 NVDAVLEAGLQHGAQGVHPGYGFLSENTAFARAAEKNGIAWIGPTPETIEDMGDKHRARS 162 V+ VL+A + GA +HPGYGFLSEN FA++ G+ WIGP+PETI MGDK RAR Sbjct: 61 RVEKVLDAARETGADAIHPGYGFLSENAEFAQSVIDAGLIWIGPSPETIRQMGDKQRARQ 120 Query: 163 IAESCGVPVLPGSRAFLPGESVELIVQEAARVGFPLLVKAAGGGGGIGMKLVDDPSALVA 222 IAE+ GVPV+PGS F PG +E + A VG+PLLVKAAGGGGGIGM+ VD P L Sbjct: 121 IAEAAGVPVVPGSIRFEPG-MLEGLEPAAEAVGYPLLVKAAGGGGGIGMRRVDGPDKLTD 179 Query: 223 AVASTQSQALKTFNDASVYLERYVPRARHIEVQVFGYGDGSVVHLFERECSVQRRFQKII 282 V +TQS A K+F + +V+LER+VP+ARH+E+QVFG+GDG +HLFER+CS+QRRFQK+I Sbjct: 180 IVVATQSMAQKSFGNGAVFLERFVPKARHVEIQVFGFGDGRAIHLFERDCSLQRRFQKVI 239 Query: 283 EESPAPNLPTQVLEKMFAAAVSLSAGQRYRGAGTVEFILDASTDEFFFLEMNTRIQVEHG 342 EE+ AP LP V + M AAAV L RY GAGTVEFI+DA T EFFFLEMNTRIQVEH Sbjct: 240 EEARAPGLPPHVTDAMAAAAVRLCEATRYSGAGTVEFIVDAGTFEFFFLEMNTRIQVEHP 299 Query: 343 VTEATTGWDLVQSQILLAAGQLQPISQSAISRTGAAVECRVYAENPQKNFLPSPGPLERY 402 VTE TG DLV QI LA G L I Q+ I G A+ECR+YAE+P K F+P+PGPL + Sbjct: 300 VTEMITGRDLVAMQIELARGSLAFIPQAEIKTHGHAIECRLYAEDPNKMFMPAPGPLATF 359 Query: 403 AFPAALDGLRVDTGVRQGDSITPFYDPMIAKIITSGMNRSVALERMQEVLRMTEITGIRH 462 P + LR+D+G R+GD +TPFYDPM+AK++ G +R A R E LR I GIR Sbjct: 360 RPPTGMAHLRIDSGYREGDVVTPFYDPMVAKVVAWGEDREEARRRAVEALRAFSIDGIRS 419 Query: 463 NIDFLLQVLQHPQFVAGMVDTHFVERERQMLLSA 496 N FLL L FV+G V T F++ R LL+A Sbjct: 420 NRHFLLACLGDENFVSGDVHTGFIDAHRMRLLAA 453 >ref|YP_004418201.1| carbamoyl-phosphate synthase, putative [Pusillimonas sp. T7-7] gb|AEC21577.1| carbamoyl-phosphate synthase, putative [Pusillimonas sp. T7-7] Length = 459 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 255/445 (57%), Positives = 330/445 (74%), Gaps = 1/445 (0%) Query: 42 IVKRILVANRGEIACRIIRAAKGLGIETIAVYSDADADSLHCEMADITVRIGAAPAAQSY 101 + K++L+ANRGEIACRII ++K LG++T+AVYS+ADA+++H E+AD V +GAAPA +SY Sbjct: 1 MAKKLLIANRGEIACRIISSSKKLGLQTVAVYSEADANAMHVELADEAVLVGAAPARESY 60 Query: 102 LNVDAVLEAGLQHGAQGVHPGYGFLSENTAFARAAEKNGIAWIGPTPETIEDMGDKHRAR 161 L D +L+A GA +HPGYGFLSEN FA+A G+AW+GP P +I DMGDK RAR Sbjct: 61 LRTDVILDAARHSGADLIHPGYGFLSENANFAQAVMDAGLAWVGPAPASIVDMGDKERAR 120 Query: 162 SIAESCGVPVLPGSRAFLPGESVELIVQEAARVGFPLLVKAAGGGGGIGMKLVDDPSALV 221 IA GVP+LPGSR F G++ +L+ + A +VG+PLLVKAA GGGGIGM+ VD+ + L+ Sbjct: 121 EIARIAGVPILPGSRRFALGQTDDLL-EAAQQVGYPLLVKAAAGGGGIGMRRVDEAAQLL 179 Query: 222 AAVASTQSQALKTFNDASVYLERYVPRARHIEVQVFGYGDGSVVHLFERECSVQRRFQKI 281 + V +TQS A K F D+SVYLERYV ARHIEVQVFG+GDG VHL++R+CSVQRRFQKI Sbjct: 180 SVVEATQSMAGKAFGDSSVYLERYVAAARHIEVQVFGFGDGQGVHLYDRDCSVQRRFQKI 239 Query: 282 IEESPAPNLPTQVLEKMFAAAVSLSAGQRYRGAGTVEFILDASTDEFFFLEMNTRIQVEH 341 IEE+PAP++P V +++ AA++L QRY GAGTVEFI D+ + +FLEMNTRIQVEH Sbjct: 240 IEEAPAPDVPDGVRAELYRAALALVEQQRYSGAGTVEFIYDSERQQAYFLEMNTRIQVEH 299 Query: 342 GVTEATTGWDLVQSQILLAAGQLQPISQSAISRTGAAVECRVYAENPQKNFLPSPGPLER 401 TE TG DLV QI A G+L P+ Q AI+ +G +VECR+YAE P+KNFLPSPG +E Sbjct: 300 PTTEMVTGVDLVAWQICHALGELTPVRQDAIALSGHSVECRLYAERPEKNFLPSPGLIET 359 Query: 402 YAFPAALDGLRVDTGVRQGDSITPFYDPMIAKIITSGMNRSVALERMQEVLRMTEITGIR 461 +P +GLRVDTGVR GD +TP+YDPMIAK++ G RS A+ R+++ L + G+ Sbjct: 360 LDWPVKQEGLRVDTGVRAGDRVTPYYDPMIAKLVAHGAGRSEAIARLRQALEGLTVAGLS 419 Query: 462 HNIDFLLQVLQHPQFVAGMVDTHFV 486 N +FL QVL F AG V T +V Sbjct: 420 TNAEFLHQVLSDADFAAGGVTTGYV 444 >ref|ZP_01076897.1| carbamoyl-phosphate synthase, putative [Marinomonas sp. MED121] gb|EAQ65116.1| carbamoyl-phosphate synthase, putative [Marinomonas sp. MED121] Length = 452 Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust. Identities = 245/453 (54%), Positives = 320/453 (70%), Gaps = 2/453 (0%) Query: 43 VKRILVANRGEIACRIIRAAKGLGIETIAVYSDADADSLHCEMADITVRIGAAPAAQSYL 102 +K+IL+ANRGEIACR+I++ + LGI+T+AVYS AD ++LH EMAD IG A A++SYL Sbjct: 1 MKKILIANRGEIACRVIKSCQKLGIKTVAVYSSADENALHVEMADEAFHIGPAKASESYL 60 Query: 103 NVDAVLEAGLQHGAQGVHPGYGFLSENTAFARAAEKNGIAWIGPTPETIEDMGDKHRARS 162 +LE VHPGYGFLSENT FAR E+NGI WIGP+ ++I DMGDK RARS Sbjct: 61 QAHKILEVCQLAHVDAVHPGYGFLSENTEFARLLEQNGIIWIGPSAKSILDMGDKERARS 120 Query: 163 IAESCGVPVLPGSRAFLPGESVELIVQEAARVGFPLLVKAAGGGGGIGMKLVDDPSALVA 222 +A GV VLPGSR F + L+ + A VGFPLLVKA+ GGGGIGM+LV+ L Sbjct: 121 LAVYAGVNVLPGSRRFTLDDHNGLL-EAAEVVGFPLLVKASAGGGGIGMRLVESAQNLAQ 179 Query: 223 AVASTQSQALKTFNDASVYLERYVPRARHIEVQVFGYGDGSVVHLFERECSVQRRFQKII 282 V STQ A ++F D ++++ERYV +ARHIE+QVFG+G+G +HL+ERECS+QRRFQKII Sbjct: 180 TVESTQQMAARSFGDGTIFMERYVAKARHIEIQVFGFGNGRAIHLYERECSIQRRFQKII 239 Query: 283 EESPAPNLPTQVLEKMFAAAVSLSAGQRYRGAGTVEFILDASTDEFFFLEMNTRIQVEHG 342 EE+PAP +PT + + M AAAV L+ Q Y GAGTVEFILDA T E+FFLEMNTRIQVEH Sbjct: 240 EEAPAPGIPTAIRDDMAAAAVRLTQEQNYLGAGTVEFILDADTFEYFFLEMNTRIQVEHP 299 Query: 343 VTEATTGWDLVQSQILLAAGQ-LQPISQSAISRTGAAVECRVYAENPQKNFLPSPGPLER 401 VTE TT DLV QI LA G+ L I+Q +I++ G A+E R+YAE+P + FLP PG + + Sbjct: 300 VTEMTTNTDLVSMQIQLAFGEDLSHITQDSIAQQGHAIEARIYAEDPSRMFLPCPGVINQ 359 Query: 402 YAFPAALDGLRVDTGVRQGDSITPFYDPMIAKIITSGMNRSVALERMQEVLRMTEITGIR 461 + +R+DTG+R GD IT +YDPMIAK+I G R VA++ + + L+ + GI+ Sbjct: 360 FQLTTDNPDIRLDTGIRSGDKITAYYDPMIAKLICFGAEREVAIKTLDKSLKEASLEGIK 419 Query: 462 HNIDFLLQVLQHPQFVAGMVDTHFVERERQMLL 494 +NI FL+ L H +F G T F++ + L+ Sbjct: 420 NNISFLINTLNHSEFNEGRSFTGFIDAYKSELI 452