BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0040.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776571.1| dipeptide/oligopeptide/nickel ABC transporte... 494 e-138 ref|YP_999445.1| binding-protein-dependent transport systems inn... 491 e-137 ref|YP_001342656.1| binding-protein-dependent transporter inner ... 471 e-131 ref|YP_004311918.1| ABC-type transporter integral membrane subun... 457 e-126 ref|YP_004483186.1| ABC transporter integral membrane protein [M... 451 e-125 >ref|YP_003776571.1| dipeptide/oligopeptide/nickel ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64663.1| ABC-type dipeptide/oligopeptide/nickel transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 305 Score = 494 bits (1271), Expect = e-138, Method: Compositional matrix adjust. Identities = 256/293 (87%), Positives = 279/293 (95%) Query: 17 FVQATLKPVPLWRRKLNRMLGHRGLVLGAAILAVIVLAALFAPLLAPHDPFEQNVSQRLI 76 +Q L P+P WRRKL R+LGHRGL++GAA+LAVIVLAA+FAPLLAPHDPF+Q+V+ RLI Sbjct: 13 LLQGALPPLPAWRRKLRRLLGHRGLMIGAAVLAVIVLAAIFAPLLAPHDPFDQDVTARLI 72 Query: 77 PPIWNALGSWDHVLGTDKLGRDYLSRLIYGARVSLIIGCAAALISGVIGTTLGVLAGYFG 136 PP+W A GSW+H+LGTDKLGRDY SRLIYGARVSL IG AAALISG+IGTTLGVLAGYFG Sbjct: 73 PPVWQAQGSWEHILGTDKLGRDYFSRLIYGARVSLTIGLAAALISGLIGTTLGVLAGYFG 132 Query: 137 GRVDALISYVITTRLSMPVVLVALAMASLVGGSLKVVIILLGLLLWDRFAVVTRSATQQL 196 GR DA+ISY+ITTRL+MPVVLVALAMASLVGGSLKVVI+LLGLLLWDRFAVVTRSATQQL Sbjct: 133 GRTDAVISYLITTRLAMPVVLVALAMASLVGGSLKVVIVLLGLLLWDRFAVVTRSATQQL 192 Query: 197 RDAEFIAAAKAIGASTPYILVREILPNIMSALIVVITLEMAHAILLEATLSFLGLGVQPP 256 RDAEFIAAAKAIGASTPYIL+REILPNIM ALIVV+TLEMAHAILLEATLSFLGLGVQPP Sbjct: 193 RDAEFIAAAKAIGASTPYILLREILPNIMGALIVVVTLEMAHAILLEATLSFLGLGVQPP 252 Query: 257 TPSWGLMVSEGKSYMFFKPWVIVIPGVALAILVLAINLVGDGLRDVNAPDGRN 309 TPSWGLMV+EGK+YMFFKPWVIVIPGVALA+LVLAINLVGDGLRDVNAPDGRN Sbjct: 253 TPSWGLMVAEGKTYMFFKPWVIVIPGVALALLVLAINLVGDGLRDVNAPDGRN 305 >ref|YP_999445.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] gb|ABM60427.1| binding-protein-dependent transport systems inner membrane component [Verminephrobacter eiseniae EF01-2] Length = 299 Score = 491 bits (1263), Expect = e-137, Method: Compositional matrix adjust. Identities = 255/286 (89%), Positives = 278/286 (97%) Query: 24 PVPLWRRKLNRMLGHRGLVLGAAILAVIVLAALFAPLLAPHDPFEQNVSQRLIPPIWNAL 83 P PLWRRKL R+LGHRGL+LG AILA+IVLAA+FAPLLA HDPF+QNV+QRLIPPIW+A Sbjct: 14 PAPLWRRKLRRLLGHRGLMLGGAILALIVLAAIFAPLLATHDPFDQNVAQRLIPPIWHAQ 73 Query: 84 GSWDHVLGTDKLGRDYLSRLIYGARVSLIIGCAAALISGVIGTTLGVLAGYFGGRVDALI 143 GSW+HVLGTDKLGRDYLSRLIYGARVSLIIG AAALISG+IGTTLGVLAGYFGGRVDALI Sbjct: 74 GSWEHVLGTDKLGRDYLSRLIYGARVSLIIGAAAALISGLIGTTLGVLAGYFGGRVDALI 133 Query: 144 SYVITTRLSMPVVLVALAMASLVGGSLKVVIILLGLLLWDRFAVVTRSATQQLRDAEFIA 203 SY+ITTRLSMPVVLVA+AMASLVGGS++VVI LLGLLLWDRFAVVTR+ATQQLRDAEFIA Sbjct: 134 SYLITTRLSMPVVLVAMAMASLVGGSIEVVITLLGLLLWDRFAVVTRAATQQLRDAEFIA 193 Query: 204 AAKAIGASTPYILVREILPNIMSALIVVITLEMAHAILLEATLSFLGLGVQPPTPSWGLM 263 AAKAIGASTPYILVRE+LPNIM AL+VVITLEMAHAILLEATLSFLGLGVQPPTPSWGLM Sbjct: 194 AAKAIGASTPYILVREVLPNIMGALMVVITLEMAHAILLEATLSFLGLGVQPPTPSWGLM 253 Query: 264 VSEGKSYMFFKPWVIVIPGVALAILVLAINLVGDGLRDVNAPDGRN 309 V+EGKSYMFFKPW+IVIPG+ALA+LVLAINLVGDGLRD++APDGR+ Sbjct: 254 VAEGKSYMFFKPWIIVIPGLALAMLVLAINLVGDGLRDIDAPDGRH 299 >ref|YP_001342656.1| binding-protein-dependent transporter inner membrane component [Marinomonas sp. MWYL1] gb|ABR72721.1| binding-protein-dependent transport systems inner membrane component [Marinomonas sp. MWYL1] Length = 305 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/304 (75%), Positives = 268/304 (88%) Query: 6 TPSMPTSQTTGFVQATLKPVPLWRRKLNRMLGHRGLVLGAAILAVIVLAALFAPLLAPHD 65 + S T T L VP WRR +NR LGHRGL++G+ IL +IV+ A+ AP LAPHD Sbjct: 2 SDSTSTVSTAPGANTFLPVVPEWRRMMNRFLGHRGLLMGSIILGLIVVLAILAPWLAPHD 61 Query: 66 PFEQNVSQRLIPPIWNALGSWDHVLGTDKLGRDYLSRLIYGARVSLIIGCAAALISGVIG 125 P+ QN+SQR+IPP+W+ GSW+H+ GTDKLGRDYLSRL+YGAR+SL IG ++ALISG+IG Sbjct: 62 PYLQNISQRMIPPVWHEKGSWEHIFGTDKLGRDYLSRLLYGARISLTIGLSSALISGLIG 121 Query: 126 TTLGVLAGYFGGRVDALISYVITTRLSMPVVLVALAMASLVGGSLKVVIILLGLLLWDRF 185 TTLGVLAGYFGGRVDA+ISY+ITTRL+MPVVLVALAM++LVGGSL++VIILLGLLLWDRF Sbjct: 122 TTLGVLAGYFGGRVDAVISYIITTRLAMPVVLVALAMSALVGGSLQMVIILLGLLLWDRF 181 Query: 186 AVVTRSATQQLRDAEFIAAAKAIGASTPYILVREILPNIMSALIVVITLEMAHAILLEAT 245 AVV RS TQQLRDAEFIA+AK +GAST YILVRE+LPNI+SALIVV+TLEMAHAILLEAT Sbjct: 182 AVVARSTTQQLRDAEFIASAKVLGASTTYILVRELLPNILSALIVVMTLEMAHAILLEAT 241 Query: 246 LSFLGLGVQPPTPSWGLMVSEGKSYMFFKPWVIVIPGVALAILVLAINLVGDGLRDVNAP 305 LSFLGLGVQPP PSWGLM+SEGK+YMFFK WVI IPG+AL +LVLAINLVGDGLRD+NAP Sbjct: 242 LSFLGLGVQPPMPSWGLMISEGKAYMFFKTWVIAIPGIALMVLVLAINLVGDGLRDMNAP 301 Query: 306 DGRN 309 +GRN Sbjct: 302 EGRN 305 >ref|YP_004311918.1| ABC-type transporter integral membrane subunit [Marinomonas mediterranea MMB-1] gb|ADZ90082.1| ABC-type transporter, integral membrane subunit [Marinomonas mediterranea MMB-1] Length = 312 Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust. Identities = 240/310 (77%), Positives = 274/310 (88%), Gaps = 5/310 (1%) Query: 5 STPSMPTSQ----TTGFVQATLKPV-PLWRRKLNRMLGHRGLVLGAAILAVIVLAALFAP 59 T S PTS + +++ PV P WRR LNR LGHRGL++G+ IL IVLAALFAP Sbjct: 3 QTTSNPTSHLSVAESALPESSGLPVVPEWRRTLNRFLGHRGLLIGSVILGAIVLAALFAP 62 Query: 60 LLAPHDPFEQNVSQRLIPPIWNALGSWDHVLGTDKLGRDYLSRLIYGARVSLIIGCAAAL 119 LAPHDP+ QN+SQR+IPPIW+ GSW+H+LGTDKLGRDYLSRL+YGAR+SL IG AAL Sbjct: 63 WLAPHDPYAQNISQRMIPPIWHEKGSWEHILGTDKLGRDYLSRLLYGARISLTIGLTAAL 122 Query: 120 ISGVIGTTLGVLAGYFGGRVDALISYVITTRLSMPVVLVALAMASLVGGSLKVVIILLGL 179 ISGVIGTTLGVLAGYFGGR DA+ISY+ITTRL++PV+LVALAMA+LVGGSL++VIILLGL Sbjct: 123 ISGVIGTTLGVLAGYFGGRTDAVISYIITTRLALPVLLVALAMAALVGGSLEMVIILLGL 182 Query: 180 LLWDRFAVVTRSATQQLRDAEFIAAAKAIGASTPYILVREILPNIMSALIVVITLEMAHA 239 LLWDRFAVV RS TQQLRDAEFIA+AK +GASTPYIL+RE+LPNI+SALIVVITLEMAHA Sbjct: 183 LLWDRFAVVARSTTQQLRDAEFIASAKVLGASTPYILIRELLPNILSALIVVITLEMAHA 242 Query: 240 ILLEATLSFLGLGVQPPTPSWGLMVSEGKSYMFFKPWVIVIPGVALAILVLAINLVGDGL 299 ILLEATLSFLGLGVQPP PSWGLMVSEGK+YMFF+PWVI IPG+ L +LVLAINLVGDGL Sbjct: 243 ILLEATLSFLGLGVQPPLPSWGLMVSEGKAYMFFQPWVIAIPGITLMVLVLAINLVGDGL 302 Query: 300 RDVNAPDGRN 309 RD+NAP+GRN Sbjct: 303 RDMNAPEGRN 312 >ref|YP_004483186.1| ABC transporter integral membrane protein [Marinomonas posidonica IVIA-Po-181] gb|AEF56267.1| ABC-type transporter, integral membrane subunit [Marinomonas posidonica IVIA-Po-181] Length = 312 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 234/297 (78%), Positives = 268/297 (90%) Query: 13 QTTGFVQATLKPVPLWRRKLNRMLGHRGLVLGAAILAVIVLAALFAPLLAPHDPFEQNVS 72 + +G + L VP WRR LN+ LGHRGL +G+ IL VIVLAA+FAP LAPHDP+ QN+S Sbjct: 16 ELSGPEASGLPVVPEWRRALNKFLGHRGLFIGSVILGVIVLAAIFAPWLAPHDPYVQNIS 75 Query: 73 QRLIPPIWNALGSWDHVLGTDKLGRDYLSRLIYGARVSLIIGCAAALISGVIGTTLGVLA 132 QR+IPPIW+ G+W+H+LGTDKLGRDYLSRL+YGAR+SL IG AALISGVIGTTLGVLA Sbjct: 76 QRMIPPIWHEKGTWEHILGTDKLGRDYLSRLLYGARISLTIGLTAALISGVIGTTLGVLA 135 Query: 133 GYFGGRVDALISYVITTRLSMPVVLVALAMASLVGGSLKVVIILLGLLLWDRFAVVTRSA 192 GYFGGR DA+ISY+ITTRL++PV+LVALAMA+LVGGSL++VIILLGLLLWDRFAVV RS Sbjct: 136 GYFGGRTDAVISYIITTRLALPVLLVALAMAALVGGSLEMVIILLGLLLWDRFAVVARST 195 Query: 193 TQQLRDAEFIAAAKAIGASTPYILVREILPNIMSALIVVITLEMAHAILLEATLSFLGLG 252 TQQLRDAEFIA+AK +GAST YIL+RE+LPNI+SALIVVITLEMAHAILLEATLSFLGLG Sbjct: 196 TQQLRDAEFIASAKVLGASTSYILIRELLPNILSALIVVITLEMAHAILLEATLSFLGLG 255 Query: 253 VQPPTPSWGLMVSEGKSYMFFKPWVIVIPGVALAILVLAINLVGDGLRDVNAPDGRN 309 VQPP PSWGLMVSEGK+YMFF+PWVI IPG+ L ILVLAINLVGDGLRD+NAP+GRN Sbjct: 256 VQPPLPSWGLMVSEGKAYMFFQPWVIAIPGITLMILVLAINLVGDGLRDMNAPEGRN 312