BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0037.p (181 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_999448.1| LysR family transcriptional regulator [Verminep... 292 1e-77 ref|XP_002537971.1| HTH-type transcriptional regulator cynR, put... 280 5e-74 ref|YP_003776574.1| LysR family transcription regulator protein ... 279 1e-73 ref|ZP_02468217.1| transcriptional regulator, LysR family protei... 205 3e-51 ref|ZP_02360301.1| regulatory protein, LysR:LysR, substrate-bind... 204 4e-51 >ref|YP_999448.1| LysR family transcriptional regulator [Verminephrobacter eiseniae EF01-2] gb|ABM60430.1| transcriptional regulator, LysR family [Verminephrobacter eiseniae EF01-2] Length = 305 Score = 292 bits (748), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 144/166 (86%), Positives = 154/166 (92%) Query: 1 MKSQYLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGM 60 MKS+YLQD ALRYFLEVVR GSIA ASQRLNVASSAISRQI SLE LLDTVLFERRPRGM Sbjct: 1 MKSEYLQDIALRYFLEVVRSGSIAAASQRLNVASSAISRQISSLEGLLDTVLFERRPRGM 60 Query: 61 VLSAGGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQ 120 VLS GGEMLAAHAQKV LE+DRVVADLLALKGLR GR+RVAASEG G+DF+PRLIR+FQQ Sbjct: 61 VLSVGGEMLAAHAQKVMLESDRVVADLLALKGLRRGRVRVAASEGLGVDFVPRLIRAFQQ 120 Query: 121 KYPAIQFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQ 166 +YPAIQFQVYVGPP +VSR VRDGNADIGVTFNRLPEP IKIV+Q+ Sbjct: 121 QYPAIQFQVYVGPPALVSRHVRDGNADIGVTFNRLPEPFIKIVYQK 166 >ref|XP_002537971.1| HTH-type transcriptional regulator cynR, putative [Ricinus communis] gb|EEF24411.1| HTH-type transcriptional regulator cynR, putative [Ricinus communis] Length = 187 Score = 280 bits (717), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 135/166 (81%), Positives = 154/166 (92%) Query: 1 MKSQYLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGM 60 MKSQ LQDTALRYFLEVVRCGSI+EASQRLNVASSAISRQI SLE++LDTVLFERRPRGM Sbjct: 1 MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGM 60 Query: 61 VLSAGGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQ 120 VLSAGGEMLAAHA+K+ LEADRVVADL ALKGLRSGR+R++ASEGF IDF+PRLI +FQ+ Sbjct: 61 VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK 120 Query: 121 KYPAIQFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQ 166 KYP FQ++VG P +VSRQVR+GNADIG+TF RLPEP+IK+VH+Q Sbjct: 121 KYPGFVFQLFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQ 166 >ref|YP_003776574.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64666.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 303 Score = 279 bits (714), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 135/166 (81%), Positives = 154/166 (92%) Query: 1 MKSQYLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGM 60 MKSQ LQDTALRYFLEVVRCGSI+EASQRLNVASSAISRQI SLE++LDTVLFERRPRGM Sbjct: 1 MKSQQLQDTALRYFLEVVRCGSISEASQRLNVASSAISRQISSLEQILDTVLFERRPRGM 60 Query: 61 VLSAGGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQ 120 VLSAGGEMLAAHA+K+ LEADRVVADL ALKGLRSGR+R++ASEGF IDF+PRLI +FQ+ Sbjct: 61 VLSAGGEMLAAHARKMALEADRVVADLQALKGLRSGRVRLSASEGFAIDFLPRLINAFQK 120 Query: 121 KYPAIQFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQ 166 KYP FQ++VG P +VSRQVR+GNADIG+TF RLPEP+IK+VH+Q Sbjct: 121 KYPGFVFQLFVGAPALVSRQVREGNADIGLTFARLPEPEIKVVHRQ 166 >ref|ZP_02468217.1| transcriptional regulator, LysR family protein [Burkholderia thailandensis MSMB43] Length = 323 Score = 205 bits (521), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 104/166 (62%), Positives = 126/166 (75%) Query: 1 MKSQYLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGM 60 MK LQDTALRYFL VVR GSI+EAS RLNVA SAISRQI LE++L T LFERR RGM Sbjct: 1 MKHDQLQDTALRYFLAVVRAGSISEASARLNVAGSAISRQIAHLEQVLGTPLFERRARGM 60 Query: 61 VLSAGGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQ 120 V SA GEMLAA+A + LEADR+V D+ AL+GLR G++R+A SEGF I+F+P I F++ Sbjct: 61 VASAAGEMLAAYAFRTELEADRLVQDIDALQGLRRGQVRIAMSEGFAIEFVPHAIADFRR 120 Query: 121 KYPAIQFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQ 166 YP I FQ V P V+R+V+ G AD+GVTF+R PE DIK+ H+Q Sbjct: 121 TYPGIVFQAAVCAPADVTRRVKKGEADVGVTFSRTPESDIKVEHRQ 166 >ref|ZP_02360301.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia oklahomensis EO147] ref|ZP_02367421.1| regulatory protein, LysR:LysR, substrate-binding [Burkholderia oklahomensis C6786] Length = 312 Score = 204 bits (519), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 103/166 (62%), Positives = 127/166 (76%) Query: 1 MKSQYLQDTALRYFLEVVRCGSIAEASQRLNVASSAISRQIRSLEELLDTVLFERRPRGM 60 MK LQ+TALRYFLEVVR GSI+EAS RL+VA SAISRQI LE++L T LFERR RGM Sbjct: 1 MKHHQLQETALRYFLEVVRAGSISEASARLSVAGSAISRQIAHLEQVLGTPLFERRSRGM 60 Query: 61 VLSAGGEMLAAHAQKVRLEADRVVADLLALKGLRSGRIRVAASEGFGIDFMPRLIRSFQQ 120 V SA GEMLAA+A + LEADR+V D+ AL+GLR G++R+A SEGF I+F+P I F++ Sbjct: 61 VASAAGEMLAAYAFRTELEADRLVQDIDALQGLRRGQVRIAMSEGFAIEFVPHAIADFRR 120 Query: 121 KYPAIQFQVYVGPPTMVSRQVRDGNADIGVTFNRLPEPDIKIVHQQ 166 YP I FQ V P V+R+V+ G AD+GVTF+R PE DIK+ H+Q Sbjct: 121 TYPGIVFQAAVCAPADVTRRVKKGEADVGVTFSRTPESDIKVEHRQ 166