BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0032.p (294 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004750942.1| transcriptional regulator [Collimonas fungiv... 532 e-149 ref|YP_003773869.1| transcription regulator protein [Herbaspiril... 402 e-110 ref|YP_002948039.1| transcriptional regulator, LysR family [Vari... 386 e-105 ref|YP_004156380.1| LysR family transcriptional regulator [Vario... 382 e-104 ref|ZP_08181498.1| transcriptional regulator [Xanthomonas gardne... 363 2e-98 >ref|YP_004750942.1| transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60119.1| transcriptional regulator [Collimonas fungivorans Ter331] Length = 294 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 278/294 (94%), Positives = 285/294 (96%) Query: 1 MDFNALEDFQLVAAHGGFGKASRASGRSKATLSRRVADLEEALGIRLIERGARSLELTEA 60 MDFNALEDFQLVA+HGGFGKASRASGRSKATLSRRVADLEEALGIRLIERGARSLELTEA Sbjct: 1 MDFNALEDFQLVASHGGFGKASRASGRSKATLSRRVADLEEALGIRLIERGARSLELTEA 60 Query: 61 GQLLRARTEGPMHEVADAVAAARDGLATPRGRLRIAAPLLFSQLALGRIAARFLASYPEV 120 GQLLRARTEGPMHEVA+AVAAARDGLATPRGRLRIAAP+LFSQLALGRIAARFL SYPEV Sbjct: 61 GQLLRARTEGPMHEVAEAVAAARDGLATPRGRLRIAAPILFSQLALGRIAARFLLSYPEV 120 Query: 121 QIEAVAEDRLVNLVDEHFDVAIRINPSKDSALVGRCFAKDRLVLAAAPSIQMPKGGRDKP 180 QIEAVAEDRLVNLVDEHFDVAIRINPSKDS LVGRCFAKDRLVLAAAPS+QMPKG RDKP Sbjct: 121 QIEAVAEDRLVNLVDEHFDVAIRINPSKDSTLVGRCFAKDRLVLAAAPSVQMPKGNRDKP 180 Query: 181 FPVPAVVTPGYRDGDVWSVRNGQFTIEPRPVLRLSSLLMVRDAIVDGAGAAMLPQSIIGG 240 FPVPAVVTP YRDGDVWSVRNGQFT+EPRPVL LSSLLMVRDAI GAGAAMLPQSIIG Sbjct: 181 FPVPAVVTPSYRDGDVWSVRNGQFTVEPRPVLHLSSLLMVRDAIAAGAGAAMLPQSIIGS 240 Query: 241 LLEKGELVSWGIAGDEVELWVLHTSRRLQSPKVRAFVEFMCKQYPNGTFTIPIR 294 +LEKGELVSWGIAGDEVELWVLHTSRRLQSPKVRAFVEFMCKQYP G+FTIPIR Sbjct: 241 MLEKGELVSWGIAGDEVELWVLHTSRRLQSPKVRAFVEFMCKQYPGGSFTIPIR 294 >ref|YP_003773869.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61961.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 291 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 193/291 (66%), Positives = 237/291 (81%) Query: 1 MDFNALEDFQLVAAHGGFGKASRASGRSKATLSRRVADLEEALGIRLIERGARSLELTEA 60 MD NAL DFQLVAAHG FG+ASR SGR+KATLSRRVA+LEE LG+RL+ERG + L +TEA Sbjct: 1 MDINALVDFQLVAAHGSFGRASRESGRAKATLSRRVAELEEELGVRLVERGTQRLTVTEA 60 Query: 61 GQLLRARTEGPMHEVADAVAAARDGLATPRGRLRIAAPLLFSQLALGRIAARFLASYPEV 120 G+LL R+EGP+ E+A+A+ AR+G + PRGRLRIAAPL+FSQLALGR+AA F A+YP+V Sbjct: 61 GELLLQRSEGPLRELAEAMTQAREGSSAPRGRLRIAAPLVFSQLALGRLAASFHAAYPQV 120 Query: 121 QIEAVAEDRLVNLVDEHFDVAIRINPSKDSALVGRCFAKDRLVLAAAPSIQMPKGGRDKP 180 +++ VAEDRLV+LV EHFD+ IRINPS D LVGRCFA+D L L AAP++ MP+ K Sbjct: 121 EVDVVAEDRLVDLVQEHFDLCIRINPSDDGNLVGRCFARDSLALVAAPTLPMPRARAGKS 180 Query: 181 FPVPAVVTPGYRDGDVWSVRNGQFTIEPRPVLRLSSLLMVRDAIVDGAGAAMLPQSIIGG 240 PVPAVV P +RD D+WS+R G+ I P+PVLRLSSL+MV+DA+ GAGAA+LP S+ Sbjct: 181 HPVPAVVMPTFRDSDLWSLREGKLLIAPQPVLRLSSLMMVKDAVCAGAGAALLPWSLASA 240 Query: 241 LLEKGELVSWGIAGDEVELWVLHTSRRLQSPKVRAFVEFMCKQYPNGTFTI 291 L+E G+L WG G EVELWVLHTSRRLQSPKVRAFV+FMC+QYP+G F + Sbjct: 241 LVEAGQLKLWGKLGGEVELWVLHTSRRLQSPKVRAFVDFMCRQYPDGRFVV 291 >ref|YP_002948039.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] gb|ACS22773.1| transcriptional regulator, LysR family [Variovorax paradoxus S110] Length = 293 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/292 (68%), Positives = 238/292 (81%), Gaps = 2/292 (0%) Query: 1 MDFNALEDFQLVAAHGGFGKASRASGRSKATLSRRVADLEEALGIRLIERGARSLELTEA 60 MD NAL DF LVAA+GG GKASRASGRSKATLSRR+ADLEE LG+RLIER AR L+LTEA Sbjct: 1 MDLNALTDFALVAANGGLGKASRASGRSKATLSRRIADLEEQLGVRLIERSARGLKLTEA 60 Query: 61 GQLLRARTEGPMHEVADAVAAARDGLATPRGRLRIAAPLLFSQLALGRIAARFLASYPEV 120 GQ+L RTEGPMHEVADA+ +AR+GL+ PRGRLRIA+P+LFSQLA+GRI A F A+YPEV Sbjct: 61 GQMLMDRTEGPMHEVADAMTSAREGLSVPRGRLRIASPVLFSQLAMGRIGAEFCAAYPEV 120 Query: 121 QIEAVAEDRLVNLVDEHFDVAIRINPSKDSALVGRCFAKDRLVLAAAPSIQMPKGGRDKP 180 E VA+DRLV+LV+E FD AIRINPS DS+LVGRCFAKDRLV+ AAPS+ MPK G+ K Sbjct: 121 SCEVVADDRLVDLVEEQFDAAIRINPSPDSSLVGRCFAKDRLVVVAAPSVPMPKRGKGKV 180 Query: 181 FPVPAVVTPGYRDGDVWSVRNGQFTIEPRPVLRLSSLLMVRDAIVDGAGAAMLPQSIIGG 240 VP VV ++ G+ W++ +G+ +EP P LRLSS LM+RDA V GAGAA++PQSI Sbjct: 181 SAVPGVVATTFQGGN-WTLDDGRLVVEPVPRLRLSSFLMIRDAAVAGAGAALIPQSIAWN 239 Query: 241 LLEKGELVSWG-IAGDEVELWVLHTSRRLQSPKVRAFVEFMCKQYPNGTFTI 291 L +GELV WG ++G EV LWVLHTSRRL +PKVRAFV+FMC+QYP G+ + Sbjct: 240 QLTRGELVQWGMVSGVEVALWVLHTSRRLPAPKVRAFVDFMCEQYPQGSLVL 291 >ref|YP_004156380.1| LysR family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU38269.1| transcriptional regulator, LysR family [Variovorax paradoxus EPS] Length = 291 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/292 (66%), Positives = 237/292 (81%), Gaps = 4/292 (1%) Query: 1 MDFNALEDFQLVAAHGGFGKASRASGRSKATLSRRVADLEEALGIRLIERGARSLELTEA 60 MD NAL DF LVA +GG GKASRASGRSKATLSRR+ADLEE LG+RLIER AR L+LTEA Sbjct: 1 MDLNALSDFALVAMNGGLGKASRASGRSKATLSRRIADLEEQLGVRLIERSARGLKLTEA 60 Query: 61 GQLLRARTEGPMHEVADAVAAARDGLATPRGRLRIAAPLLFSQLALGRIAARFLASYPEV 120 GQ+L RTEGPMHEVADA+ +AR+GL+ PRGRLR+A+P+LFSQL +GRI+A F +YPEV Sbjct: 61 GQMLMDRTEGPMHEVADAMTSAREGLSVPRGRLRVASPVLFSQLTMGRISAEFCTAYPEV 120 Query: 121 QIEAVAEDRLVNLVDEHFDVAIRINPSKDSALVGRCFAKDRLVLAAAPSIQMPKGGRDKP 180 E VA+DRLV+LV+E FD AIRINP+ DS+LVGRCFAKDRLV+ AAPS+ MPK G K Sbjct: 121 SCEVVADDRLVDLVEEQFDAAIRINPAPDSSLVGRCFAKDRLVVVAAPSVPMPKPG--KV 178 Query: 181 FPVPAVVTPGYRDGDVWSVRNGQFTIEPRPVLRLSSLLMVRDAIVDGAGAAMLPQSIIGG 240 PVP +V+ ++DG+ W++ +G+ +EP P LRLSS LM+RDA + GAGAA++PQSI Sbjct: 179 SPVPGIVSTNFQDGN-WTLDDGRLVLEPIPRLRLSSFLMIRDAAIAGAGAALIPQSIAWN 237 Query: 241 LLEKGELVSWG-IAGDEVELWVLHTSRRLQSPKVRAFVEFMCKQYPNGTFTI 291 L +GELV WG ++G EV LWVLHTSRRL +PKVRAFV+FMC QYP G+ + Sbjct: 238 QLTRGELVQWGMVSGVEVALWVLHTSRRLPAPKVRAFVDFMCAQYPQGSLVL 289 >ref|ZP_08181498.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] gb|EGD20855.1| transcriptional regulator [Xanthomonas gardneri ATCC 19865] Length = 291 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 188/292 (64%), Positives = 224/292 (76%), Gaps = 4/292 (1%) Query: 1 MDFNALEDFQLVAAHGGFGKASRASGRSKATLSRRVADLEEALGIRLIERGARSLELTEA 60 MD NAL DF LVAA+ G GKASRASGRSKATLSRR+ADLEE LG+RL+ER AR L LTEA Sbjct: 1 MDLNALIDFALVAANQGLGKASRASGRSKATLSRRIADLEEQLGVRLVERSARGLRLTEA 60 Query: 61 GQLLRARTEGPMHEVADAVAAARDGLATPRGRLRIAAPLLFSQLALGRIAARFLASYPEV 120 GQLL RTE P+ EVA+A+AAAR+GL+TPRGRLR+A+P+LFSQLA+GRI A F A+YPE+ Sbjct: 61 GQLLMDRTEVPLSEVAEAMAAAREGLSTPRGRLRVASPVLFSQLAMGRIGAEFCAAYPEI 120 Query: 121 QIEAVAEDRLVNLVDEHFDVAIRINPSKDSALVGRCFAKDRLVLAAAPSIQMPKGGRDKP 180 +E +AEDR V+LV+E FDVAIRINPS DS+LVGRCFAKDRLV+ AAP MP G Sbjct: 121 MLEVIAEDRTVDLVEEQFDVAIRINPSPDSSLVGRCFAKDRLVVVAAPGFAMPISGALT- 179 Query: 181 FPVPAVVTPGYRDGDVWSVRNGQFTIEPRPVLRLSSLLMVRDAIVDGAGAAMLPQSIIGG 240 VPAVV ++ W + +G+ +EP P LR SS LMVRDA + G A+LPQSI Sbjct: 180 -SVPAVVMSSFQP-TTWVLDDGRLVLEPIPRLRFSSFLMVRDAAIAGGSVALLPQSIAWN 237 Query: 241 LLEKGELVSWG-IAGDEVELWVLHTSRRLQSPKVRAFVEFMCKQYPNGTFTI 291 L +GELV WG IAG E LWVLHTSRRL +PKVRAFV+FMC +YP+ + + Sbjct: 238 QLARGELVQWGTIAGVEPALWVLHTSRRLAAPKVRAFVDFMCDRYPDVSLVL 289