BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0003.p (170 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004754763.1| Rod shape-determining protein mreD [Collimon... 268 3e-70 ref|YP_001351888.1| MreD rod shape-determining protein [Janthino... 267 4e-70 ref|ZP_08273272.1| Rod shape-determining protein MreD [Oxalobact... 263 7e-69 ref|YP_001098534.1| putative rod shape-determining protein mreD ... 253 7e-66 ref|YP_003778038.1| rod shape-determining MreD transmembrane pro... 249 9e-65 >ref|YP_004754763.1| Rod shape-determining protein mreD [Collimonas fungivorans Ter331] gb|AEK63940.1| Rod shape-determining protein mreD [Collimonas fungivorans Ter331] Length = 170 Score = 268 bits (684), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 137/170 (80%), Positives = 154/170 (90%) Query: 1 MNDPHYILLPANPLFIALSLVAAFLLNLLPWGQWVGVPDFVALVLVFWAIHEPRKIGISI 60 M PHYILLPANPLFIA++L+ AFLLNLLPWGQW GVPDFVALVLVFW+IH+PRKIGI I Sbjct: 1 MMRPHYILLPANPLFIAMTLLLAFLLNLLPWGQWPGVPDFVALVLVFWSIHQPRKIGIGI 60 Query: 61 AFMMGLLMDVNEATLLGENALAYTLLSYFSIMIHRRVLWFPVGTQALHILPLLLLTQAVQ 120 AF MGLLMDV+EATLLG+NALAYTLLSYF+IMIHRRVLWF V QALH+LPL+LLTQ +Q Sbjct: 61 AFCMGLLMDVHEATLLGQNALAYTLLSYFAIMIHRRVLWFSVSVQALHVLPLMLLTQLIQ 120 Query: 121 LLVRLIVSGKFPHWYYFSESFVCALLWPVVAWLLLAPQRRAINRDDNRPI 170 L++R+ VSGKFP W YF+ESFVC LWPVV WLLLAPQRRA++RDDNRPI Sbjct: 121 LVIRMSVSGKFPGWLYFAESFVCVALWPVVVWLLLAPQRRAVDRDDNRPI 170 >ref|YP_001351888.1| MreD rod shape-determining protein [Janthinobacterium sp. Marseille] gb|ABR88680.1| MreD rod shape-determining protein [Janthinobacterium sp. Marseille] Length = 171 Score = 267 bits (682), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 129/169 (76%), Positives = 149/169 (88%) Query: 2 NDPHYILLPANPLFIALSLVAAFLLNLLPWGQWVGVPDFVALVLVFWAIHEPRKIGISIA 61 + PHYILLPA+P FIALSL+ AFLLNLLPWGQW+GVPDFVAL+LVFW++H+PRK+GI +A Sbjct: 3 HQPHYILLPASPAFIALSLIIAFLLNLLPWGQWIGVPDFVALLLVFWSMHQPRKVGIGVA 62 Query: 62 FMMGLLMDVNEATLLGENALAYTLLSYFSIMIHRRVLWFPVGTQALHILPLLLLTQAVQL 121 F MG+LMDV++A +LGENALAYTLLSYF+IMIHRRVLWFP GTQALH+ LLL TQ VQL Sbjct: 63 FFMGILMDVHDAAVLGENALAYTLLSYFAIMIHRRVLWFPNGTQALHVFLLLLGTQLVQL 122 Query: 122 LVRLIVSGKFPHWYYFSESFVCALLWPVVAWLLLAPQRRAINRDDNRPI 170 +VRL V G FP W YF+ES V ALLWPVV W+LLAPQRRAINRDD RP+ Sbjct: 123 IVRLFVGGNFPGWLYFAESAVAALLWPVVTWILLAPQRRAINRDDTRPL 171 >ref|ZP_08273272.1| Rod shape-determining protein MreD [Oxalobacteraceae bacterium IMCC9480] gb|EGF33257.1| Rod shape-determining protein MreD [Oxalobacteraceae bacterium IMCC9480] Length = 170 Score = 263 bits (672), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 128/170 (75%), Positives = 144/170 (84%) Query: 1 MNDPHYILLPANPLFIALSLVAAFLLNLLPWGQWVGVPDFVALVLVFWAIHEPRKIGISI 60 MN PHYILLP +PLFI SL AFLLNLLPWG VGVPDFVALVL+FW+IH+PRK+GI + Sbjct: 1 MNQPHYILLPVSPLFIIASLACAFLLNLLPWGGLVGVPDFVALVLIFWSIHQPRKVGIGV 60 Query: 61 AFMMGLLMDVNEATLLGENALAYTLLSYFSIMIHRRVLWFPVGTQALHILPLLLLTQAVQ 120 AF MGLLMDV+ A+LLGENAL YTLLSY +IMIHRRVLWFPV TQALHILPLLL TQ VQ Sbjct: 61 AFCMGLLMDVHNASLLGENALVYTLLSYLAIMIHRRVLWFPVRTQALHILPLLLATQVVQ 120 Query: 121 LLVRLIVSGKFPHWYYFSESFVCALLWPVVAWLLLAPQRRAINRDDNRPI 170 L++RL+ SGK+P W +F ES + LWP+V WLLLAPQRRAINRDD RPI Sbjct: 121 LVIRLLASGKYPGWLFFMESLISVALWPLVTWLLLAPQRRAINRDDTRPI 170 >ref|YP_001098534.1| putative rod shape-determining protein mreD [Herminiimonas arsenicoxydans] emb|CAL60405.1| Putative Rod shape-determining protein mreD [Herminiimonas arsenicoxydans] Length = 171 Score = 253 bits (646), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 125/169 (73%), Positives = 151/169 (89%) Query: 2 NDPHYILLPANPLFIALSLVAAFLLNLLPWGQWVGVPDFVALVLVFWAIHEPRKIGISIA 61 + PHYILLPA+PLFIA+SL+ AFLLNLLPWGQW+G+PDFVAL+LVFW++H+PR++GI +A Sbjct: 3 HQPHYILLPASPLFIAVSLIIAFLLNLLPWGQWIGIPDFVALILVFWSMHQPRRVGIGVA 62 Query: 62 FMMGLLMDVNEATLLGENALAYTLLSYFSIMIHRRVLWFPVGTQALHILPLLLLTQAVQL 121 F MGLLMDV++A +LGENALAYTLLSYF+IMIHRRVLWFP+GTQALH+ LLL+ Q V L Sbjct: 63 FFMGLLMDVHDAAVLGENALAYTLLSYFAIMIHRRVLWFPLGTQALHVFVLLLVAQLVAL 122 Query: 122 LVRLIVSGKFPHWYYFSESFVCALLWPVVAWLLLAPQRRAINRDDNRPI 170 +VRL+V G FP W YF+ES V ALLWP+V W+LLAPQRRAINRDD RP+ Sbjct: 123 IVRLMVGGNFPGWLYFTESAVAALLWPLVTWILLAPQRRAINRDDTRPL 171 >ref|YP_003778038.1| rod shape-determining MreD transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66130.1| rod shape-determining MreD transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 169 Score = 249 bits (636), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 137/170 (80%), Positives = 156/170 (91%), Gaps = 1/170 (0%) Query: 1 MNDPHYILLPANPLFIALSLVAAFLLNLLPWGQWVGVPDFVALVLVFWAIHEPRKIGISI 60 MN+ HYILLPANPLFIA SLV AFLLNL+PWGQ GVPDFVAL LVFW IH+PRK+GIS+ Sbjct: 1 MNN-HYILLPANPLFIAFSLVVAFLLNLMPWGQMAGVPDFVALALVFWNIHQPRKVGISV 59 Query: 61 AFMMGLLMDVNEATLLGENALAYTLLSYFSIMIHRRVLWFPVGTQALHILPLLLLTQAVQ 120 AF+MGLLMDVNEATLLGENALAYTLLSYF+IMIHRRVLWFP+ TQALH+LPLLLL QAVQ Sbjct: 60 AFLMGLLMDVNEATLLGENALAYTLLSYFAIMIHRRVLWFPLRTQALHVLPLLLLAQAVQ 119 Query: 121 LLVRLIVSGKFPHWYYFSESFVCALLWPVVAWLLLAPQRRAINRDDNRPI 170 L+++L+V+GK P W+YFSES V ALLWPVV+ LLLAPQRRA++RD+NRPI Sbjct: 120 LVIQLLVTGKSPDWFYFSESVVSALLWPVVSLLLLAPQRRAVDRDENRPI 169