BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0001.p         (137 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776764.1| TetR family transcription regulator protein ...   153   7e-36
ref|YP_702490.1| TetR family transcriptional regulator [Rhodococ...   141   4e-32
ref|YP_002362435.1| TetR family transcriptional regulator [Methy...   140   5e-32
ref|YP_001208911.1| TetR family transcriptional regulator [Brady...   140   6e-32
ref|YP_001233816.1| TetR family transcriptional regulator [Acidi...   139   2e-31

>ref|YP_003776764.1| TetR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ64856.1| TetR family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 185

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 76/130 (58%), Positives = 94/130 (72%)

Query: 1   MANAVLSHIDGWFQREVYVPLRESADAMAGINRMFDEVKRYFLSGRKVCLVGVFALVNVR 60
           MA AVL H+D WF+R V+  L E  DA AGI  MFD+V RYFLSG++VCLVGVFAL N R
Sbjct: 54  MAQAVLGHVDAWFRRHVFESLAEHEDAEAGIKAMFDDVSRYFLSGQRVCLVGVFALGNER 113

Query: 61  DRFADKVKSYFVDWAAALHAALQRSGYEPEEAAGLTEEILAGIQGALVLARAVDDPQIFV 120
           DRFA  V+ YF  W  AL +AL R+G +P+EA  L EE++ GIQGALVLARA+D   +F 
Sbjct: 114 DRFAVMVRDYFTAWIDALASALVRTGRKPKEARMLAEEVVGGIQGALVLARALDQTDVFA 173

Query: 121 RTLERLQQRL 130
             ++R Q+RL
Sbjct: 174 DAMKRFQKRL 183


>ref|YP_702490.1| TetR family transcriptional regulator [Rhodococcus jostii RHA1]
 gb|ABG94332.1| possible transcriptional regulator, TetR family protein
           [Rhodococcus jostii RHA1]
          Length = 190

 Score =  141 bits (355), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 90/128 (70%), Gaps = 1/128 (0%)

Query: 1   MANAVLSHIDGWFQREVYVPLRESADAMAGINRMFDEVKRYFLSGRKVCLVGVFALVNVR 60
           MA AVL  +D WFQ  VY+PLR S  A A + RMFDEV+ YF SGR++CL G FAL   R
Sbjct: 54  MAEAVLDEVDAWFQTAVYLPLRGSEPAAARLERMFDEVETYFRSGRRICLFGAFALGLER 113

Query: 61  DRFADKVKSYFVDWAAALHAALQRSGYEPEEAAGLTEEILAGIQGALVLARAVDDPQIFV 120
           DRFAD+V++YF DW  +L  AL  +G+    +  L EE++AGIQGALVLARA+DDP  F 
Sbjct: 114 DRFADRVRAYFTDWVDSLAGALADAGHG-RPSRPLAEEVVAGIQGALVLARALDDPDSFT 172

Query: 121 RTLERLQQ 128
           R L RL++
Sbjct: 173 RILTRLRR 180


>ref|YP_002362435.1| TetR family transcriptional regulator [Methylocella silvestris BL2]
 gb|ACK51073.1| transcriptional regulator, TetR family [Methylocella silvestris
           BL2]
          Length = 186

 Score =  140 bits (354), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/130 (52%), Positives = 89/130 (68%)

Query: 1   MANAVLSHIDGWFQREVYVPLRESADAMAGINRMFDEVKRYFLSGRKVCLVGVFALVNVR 60
           MA AVL+ I+ WF+  VY PLRE+ DA   +  M   V+ YF SGR+ CL+G FAL NVR
Sbjct: 54  MAEAVLADIESWFEAHVYRPLRETEDAAQAVGDMRQSVEAYFRSGRRACLIGAFALDNVR 113

Query: 61  DRFADKVKSYFVDWAAALHAALQRSGYEPEEAAGLTEEILAGIQGALVLARAVDDPQIFV 120
           DRF+ K+++YF  W  AL  AL+R G +P+E     EE +A IQGALVLARA+DDP +F 
Sbjct: 114 DRFSAKIRNYFAAWTEALAGALERGGVDPKEVPYRAEEAVANIQGALVLARALDDPAVFE 173

Query: 121 RTLERLQQRL 130
           R + R++ RL
Sbjct: 174 RAMARIEARL 183


>ref|YP_001208911.1| TetR family transcriptional regulator [Bradyrhizobium sp. ORS 278]
 emb|CAL80696.1| putative transcriptional regulator, TetR family [Bradyrhizobium sp.
           ORS 278]
          Length = 187

 Score =  140 bits (353), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/130 (56%), Positives = 89/130 (68%), Gaps = 1/130 (0%)

Query: 1   MANAVLSHIDGWFQREVYVPLRESADAMAGINRMFDEVKRYFLSGRKVCLVGVFALVNVR 60
           MA AVL H+DGWF+RE+Y PLR+ A  +A I RM+  V  YF SGR+VCLVG FAL   R
Sbjct: 53  MARAVLDHVDGWFEREIYAPLRDDAPGLA-IARMWRGVDGYFRSGRRVCLVGAFALDETR 111

Query: 61  DRFADKVKSYFVDWAAALHAALQRSGYEPEEAAGLTEEILAGIQGALVLARAVDDPQIFV 120
           DRFA  + SYF  W  AL  AL R G+   +AA   EE++ GIQGALVLARA +D  +F 
Sbjct: 112 DRFAAVIASYFTRWIEALRDALVRGGWPVAQAADSAEEVVLGIQGALVLARATNDAAVFG 171

Query: 121 RTLERLQQRL 130
           R L RLQ+RL
Sbjct: 172 RALARLQRRL 181


>ref|YP_001233816.1| TetR family transcriptional regulator [Acidiphilium cryptum JF-5]
 gb|ABQ29897.1| transcriptional regulator, TetR family [Acidiphilium cryptum JF-5]
          Length = 191

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/135 (54%), Positives = 87/135 (64%), Gaps = 3/135 (2%)

Query: 1   MANAVLSHIDGWFQREVYVPLRESADAMA---GINRMFDEVKRYFLSGRKVCLVGVFALV 57
           MA AVL  +D WF+R V+ PLR+ A  +A    I  M+D V  YF SG ++CLVG FAL 
Sbjct: 53  MAQAVLDDVDAWFERHVFAPLRDEAPEVAPGAAIEGMWDAVTAYFRSGARICLVGAFALD 112

Query: 58  NVRDRFADKVKSYFVDWAAALHAALQRSGYEPEEAAGLTEEILAGIQGALVLARAVDDPQ 117
             RDRFAD V  YF+ W AAL  AL R G+ P EA    EE + GIQGALVLARA  D  
Sbjct: 113 GTRDRFADAVSGYFIRWIAALRGALVRRGWAPTEAHSRAEEAVLGIQGALVLARATGDQA 172

Query: 118 IFVRTLERLQQRLXP 132
           +FVR +ERL+ RL P
Sbjct: 173 VFVRAIERLRLRLRP 187