BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0130.p (387 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753800.1| Xylose ABC transporter permease xylH [Collim... 617 e-174 ref|YP_003777870.1| D-xylose ABC transporter permease [Herbaspir... 550 e-154 ref|YP_002871906.1| xylose ABC transporter permease [Pseudomonas... 535 e-150 gb|EGH58737.1| inner-membrane translocator [Pseudomonas syringae... 534 e-149 ref|NP_792802.1| D-xylose ABC transporter permease [Pseudomonas ... 532 e-149 >ref|YP_004753800.1| Xylose ABC transporter permease xylH [Collimonas fungivorans Ter331] gb|AEK62977.1| Xylose ABC transporter, permease protein xylH [Collimonas fungivorans Ter331] Length = 379 Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust. Identities = 338/378 (89%), Positives = 359/378 (94%) Query: 10 TTANIKQLFSRYKIMALLIAIAIIWAFFSWKTEGGFVTPRNLSNLLRQMSVTGILACGMV 69 +T NIKQLF +YKIMALLIAIAIIWAFFSWKTEGGFVTPRNLSNLLRQMS+TGILACGMV Sbjct: 2 STINIKQLFRQYKIMALLIAIAIIWAFFSWKTEGGFVTPRNLSNLLRQMSITGILACGMV 61 Query: 70 LVIIAGEIDLSVGSLLGLLGGVAAILNVTHNLPLPLNLFLVLLLGLLLGLFNGYLTAYMR 129 LVII GEIDLSVGS+LGLLGGVAA+LNVTH+LPLPLNL LVLLLGL LGLFNGYLTAYMR Sbjct: 62 LVIIGGEIDLSVGSMLGLLGGVAAVLNVTHHLPLPLNLCLVLLLGLALGLFNGYLTAYMR 121 Query: 130 IPSFIVGLGGMLAFRGVLLGITGGLTIAPVSSDLVYLGQGYLPASFGVALVVVLFVLALA 189 IPSFIVGLGGMLAFRG+LLG+TGGLTIAPVSSDLVYLGQGYL G+ L V LF+L LA Sbjct: 122 IPSFIVGLGGMLAFRGILLGVTGGLTIAPVSSDLVYLGQGYLTPQLGIVLGVGLFILTLA 181 Query: 190 LTWRQRVNRVRHALPVPPLWRDAIKVALIGAVLLAFVRTLNSYDGIPVPVLLLLALLGLF 249 LTWRQR NR++HALPVPPLWRD ++V LIG VLLAFV TLN+YDGIPVPVLLLLALLGLF Sbjct: 182 LTWRQRRNRMQHALPVPPLWRDGVRVLLIGLVLLAFVSTLNTYDGIPVPVLLLLALLGLF 241 Query: 250 SYITTQTVFGRRIYSVGSNMEATRLSGVNVQSVKLWVFGIMGVMCALAGLVNTARLAAGS 309 SY+TTQTVFGRRIYSVGSNMEATRLSGVNVQ+VKLW+FGIMGVMCALAGLVNTARLAAGS Sbjct: 242 SYVTTQTVFGRRIYSVGSNMEATRLSGVNVQAVKLWIFGIMGVMCALAGLVNTARLAAGS 301 Query: 310 PSSGSMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTYWQMIVK 369 PS+G+MGELDAIAACFIGGTSMRGGSGT+YGALIGALVMASLDNGMSMLDV TYWQMIVK Sbjct: 302 PSAGNMGELDAIAACFIGGTSMRGGSGTVYGALIGALVMASLDNGMSMLDVDTYWQMIVK 361 Query: 370 GSILMLAVWVDVSTRSGR 387 GSILMLAVWVDVSTRSGR Sbjct: 362 GSILMLAVWVDVSTRSGR 379 >ref|YP_003777870.1| D-xylose ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ65962.1| ABC-type D-xylose transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 385 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 329/384 (85%), Positives = 356/384 (92%) Query: 4 TLSTGNTTANIKQLFSRYKIMALLIAIAIIWAFFSWKTEGGFVTPRNLSNLLRQMSVTGI 63 T ST + A++KQ+F RYKI+ALLIAIAIIW FFS+ T+GGFVTPRNLSNLLRQMSVTGI Sbjct: 2 TSSTLASMADLKQVFRRYKIIALLIAIAIIWGFFSFMTDGGFVTPRNLSNLLRQMSVTGI 61 Query: 64 LACGMVLVIIAGEIDLSVGSLLGLLGGVAAILNVTHNLPLPLNLFLVLLLGLLLGLFNGY 123 LACGMVLVIIAGEIDLSVGSLLGLLGG+AA+L+V+H+LPL LNL L L GL LGL NGY Sbjct: 62 LACGMVLVIIAGEIDLSVGSLLGLLGGLAALLDVSHHLPLALNLVLALGFGLALGLLNGY 121 Query: 124 LTAYMRIPSFIVGLGGMLAFRGVLLGITGGLTIAPVSSDLVYLGQGYLPASFGVALVVVL 183 LTAY+ IPSFIVGLGGMLAFRG+LLGITGGLTIAPVS ++VYLGQGYLP GVAL + L Sbjct: 122 LTAYLGIPSFIVGLGGMLAFRGILLGITGGLTIAPVSDNMVYLGQGYLPPQMGVALGIAL 181 Query: 184 FVLALALTWRQRVNRVRHALPVPPLWRDAIKVALIGAVLLAFVRTLNSYDGIPVPVLLLL 243 FVLA+ALTW RVNR RH LP+ LWRDA+KV +IGAVLLAFVRTLNSYDGIPVPVLLLL Sbjct: 182 FVLAVALTWMSRVNRSRHGLPLAALWRDALKVVVIGAVLLAFVRTLNSYDGIPVPVLLLL 241 Query: 244 ALLGLFSYITTQTVFGRRIYSVGSNMEATRLSGVNVQSVKLWVFGIMGVMCALAGLVNTA 303 ALLGLFSY++TQTVFGRRIYSVGSNMEATRLSGVNVQ+VKLWVFGIMGVMCALAGLVNTA Sbjct: 242 ALLGLFSYVSTQTVFGRRIYSVGSNMEATRLSGVNVQAVKLWVFGIMGVMCALAGLVNTA 301 Query: 304 RLAAGSPSSGSMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTY 363 RLAAGSPS+G+MGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTY Sbjct: 302 RLAAGSPSAGNMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTY 361 Query: 364 WQMIVKGSILMLAVWVDVSTRSGR 387 WQMIVKGSIL+LAVWVDVSTRSGR Sbjct: 362 WQMIVKGSILVLAVWVDVSTRSGR 385 >ref|YP_002871906.1| xylose ABC transporter permease [Pseudomonas fluorescens SBW25] emb|CAY48533.1| xylose ABC transport system, permease protein [Pseudomonas fluorescens SBW25] Length = 378 Score = 535 bits (1379), Expect = e-150, Method: Compositional matrix adjust. Identities = 295/375 (78%), Positives = 339/375 (90%) Query: 13 NIKQLFSRYKIMALLIAIAIIWAFFSWKTEGGFVTPRNLSNLLRQMSVTGILACGMVLVI 72 +KQLF+RYK++AL+IA+A+IW FFSW+TEGGF+TPRNLSNLLRQMS+TGILACGMVLVI Sbjct: 3 QLKQLFTRYKMLALVIAVAVIWLFFSWQTEGGFLTPRNLSNLLRQMSITGILACGMVLVI 62 Query: 73 IAGEIDLSVGSLLGLLGGVAAILNVTHNLPLPLNLFLVLLLGLLLGLFNGYLTAYMRIPS 132 I+GEIDLSVGSLLGLLGG+AAIL+V +++PL NL LV L GL++GL NGY+TAY+RIPS Sbjct: 63 ISGEIDLSVGSLLGLLGGLAAILDVVYHIPLLANLSLVALCGLMIGLANGYMTAYLRIPS 122 Query: 133 FIVGLGGMLAFRGVLLGITGGLTIAPVSSDLVYLGQGYLPASFGVALVVVLFVLALALTW 192 FIVGLGGMLAFRG+LLGITGG TIAPVS LVY+GQGYLP S G+ L V+LF L L LTW Sbjct: 123 FIVGLGGMLAFRGILLGITGGTTIAPVSPSLVYVGQGYLPHSVGIGLGVLLFALTLFLTW 182 Query: 193 RQRVNRVRHALPVPPLWRDAIKVALIGAVLLAFVRTLNSYDGIPVPVLLLLALLGLFSYI 252 +QR NR H L RD ++VA+IGAVL FV TLNSYDGIPVPVLLLL LLG+FSY+ Sbjct: 183 KQRRNRALHGLAAHSRVRDGVRVAVIGAVLAGFVTTLNSYDGIPVPVLLLLVLLGVFSYV 242 Query: 253 TTQTVFGRRIYSVGSNMEATRLSGVNVQSVKLWVFGIMGVMCALAGLVNTARLAAGSPSS 312 T+QTVFGRR+Y+VGSNMEATRLSG+NVQ+VKLW+FGIMGVMCALAGLVNTARLAAGSPS+ Sbjct: 243 TSQTVFGRRVYAVGSNMEATRLSGINVQAVKLWIFGIMGVMCALAGLVNTARLAAGSPSA 302 Query: 313 GSMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTYWQMIVKGSI 372 G+MGELDAIAACFIGGTSMRGGSGT+YGAL+GALV+ SLDNGMSMLDV +YWQMIVKGSI Sbjct: 303 GNMGELDAIAACFIGGTSMRGGSGTVYGALLGALVITSLDNGMSMLDVDSYWQMIVKGSI 362 Query: 373 LMLAVWVDVSTRSGR 387 L+LAVWVDVSTR+GR Sbjct: 363 LVLAVWVDVSTRTGR 377 >gb|EGH58737.1| inner-membrane translocator [Pseudomonas syringae pv. maculicola str. ES4326] Length = 378 Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust. Identities = 288/375 (76%), Positives = 333/375 (88%) Query: 13 NIKQLFSRYKIMALLIAIAIIWAFFSWKTEGGFVTPRNLSNLLRQMSVTGILACGMVLVI 72 +KQ F+RYK++AL+I+IA+IW FFSW TEGGF+TPRNLSNLLRQMS+TGILACGMVLVI Sbjct: 3 QVKQFFTRYKMLALVISIAVIWLFFSWHTEGGFLTPRNLSNLLRQMSITGILACGMVLVI 62 Query: 73 IAGEIDLSVGSLLGLLGGVAAILNVTHNLPLPLNLFLVLLLGLLLGLFNGYLTAYMRIPS 132 I+GEIDLSVGS+LGLLGG+AAIL+V + +PL NL +V L GL++GL NGY+TAY+RIPS Sbjct: 63 ISGEIDLSVGSMLGLLGGLAAILDVVYQVPLLANLSVVALCGLMIGLANGYMTAYLRIPS 122 Query: 133 FIVGLGGMLAFRGVLLGITGGLTIAPVSSDLVYLGQGYLPASFGVALVVVLFVLALALTW 192 FIVGLGGMLAFRGVLLGITGG TIAPVS LVY+GQGYLP + G L ++L L + LTW Sbjct: 123 FIVGLGGMLAFRGVLLGITGGTTIAPVSPSLVYVGQGYLPHAVGTGLGLLLMTLTIFLTW 182 Query: 193 RQRVNRVRHALPVPPLWRDAIKVALIGAVLLAFVRTLNSYDGIPVPVLLLLALLGLFSYI 252 +QR NR H L + RD ++VALIGAVL FV LNSYDGIPVPVLLLL LLG+FSY+ Sbjct: 183 KQRRNRALHGLMPHSILRDLLRVALIGAVLAGFVYILNSYDGIPVPVLLLLVLLGVFSYV 242 Query: 253 TTQTVFGRRIYSVGSNMEATRLSGVNVQSVKLWVFGIMGVMCALAGLVNTARLAAGSPSS 312 T+QTVFGRR+Y+VGSNMEATRLSG+NVQ+VKLW+FGIMGVMCALAGLVNTARLAAGSPS+ Sbjct: 243 TSQTVFGRRVYAVGSNMEATRLSGINVQAVKLWIFGIMGVMCALAGLVNTARLAAGSPSA 302 Query: 313 GSMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTYWQMIVKGSI 372 G+MGELDAIAACFIGGTSMRGGSGT+YGAL+GALV+ SLDNGMSMLDV +YWQMIVKG I Sbjct: 303 GNMGELDAIAACFIGGTSMRGGSGTVYGALLGALVITSLDNGMSMLDVDSYWQMIVKGGI 362 Query: 373 LMLAVWVDVSTRSGR 387 L+LAVWVDVSTR+GR Sbjct: 363 LVLAVWVDVSTRAGR 377 >ref|NP_792802.1| D-xylose ABC transporter permease [Pseudomonas syringae pv. tomato str. DC3000] gb|AAO56497.1| D-xylose ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000] gb|EGH95464.1| D-xylose ABC transporter, permease protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 378 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 290/375 (77%), Positives = 333/375 (88%) Query: 13 NIKQLFSRYKIMALLIAIAIIWAFFSWKTEGGFVTPRNLSNLLRQMSVTGILACGMVLVI 72 +KQ F+RYK++AL+IAIA+IW FFSW+TEGGF+TPRNLSNLLRQMS+TGILACGMVLVI Sbjct: 3 QVKQFFTRYKMLALVIAIAVIWLFFSWQTEGGFLTPRNLSNLLRQMSITGILACGMVLVI 62 Query: 73 IAGEIDLSVGSLLGLLGGVAAILNVTHNLPLPLNLFLVLLLGLLLGLFNGYLTAYMRIPS 132 I+GEIDLSVGS+LGLLGG+AAIL+V +++PL NL LV L GL++GL NGY+TAY+RIPS Sbjct: 63 ISGEIDLSVGSMLGLLGGLAAILDVVYHVPLLANLSLVALCGLMIGLANGYMTAYLRIPS 122 Query: 133 FIVGLGGMLAFRGVLLGITGGLTIAPVSSDLVYLGQGYLPASFGVALVVVLFVLALALTW 192 FIVGLGGMLAFRG+LLGITGG TIAPVS LVY+GQGYLP S G L V+L L L LTW Sbjct: 123 FIVGLGGMLAFRGILLGITGGTTIAPVSPSLVYVGQGYLPHSVGTGLGVLLLALTLFLTW 182 Query: 193 RQRVNRVRHALPVPPLWRDAIKVALIGAVLLAFVRTLNSYDGIPVPVLLLLALLGLFSYI 252 +QR NR H L + RD ++V LIGAVL FV LNSYDGIPVPVLLLL LLG+FSY+ Sbjct: 183 KQRRNRALHGLTAHSMVRDVLRVVLIGAVLGGFVYILNSYDGIPVPVLLLLVLLGVFSYV 242 Query: 253 TTQTVFGRRIYSVGSNMEATRLSGVNVQSVKLWVFGIMGVMCALAGLVNTARLAAGSPSS 312 T+QTVFGRR+Y+VGSNMEATRLSG+NVQ+VKLW+FGIMGVMCA AGLVNTARLAAGSPS+ Sbjct: 243 TSQTVFGRRVYAVGSNMEATRLSGINVQAVKLWIFGIMGVMCAFAGLVNTARLAAGSPSA 302 Query: 313 GSMGELDAIAACFIGGTSMRGGSGTIYGALIGALVMASLDNGMSMLDVGTYWQMIVKGSI 372 G+MGELDAIAACFIGGTSMRGGSGT+YGAL+GALV+ SLDNGMSMLDV +YWQMIVKG I Sbjct: 303 GNMGELDAIAACFIGGTSMRGGSGTVYGALLGALVITSLDNGMSMLDVDSYWQMIVKGGI 362 Query: 373 LMLAVWVDVSTRSGR 387 L+LAVWVDVSTR+GR Sbjct: 363 LVLAVWVDVSTRAGR 377