BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0032.0129.p         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002871906.1| xylose ABC transporter permease [Pseudomonas...    75   2e-12
ref|ZP_07774804.1| simple sugar transport system permease protei...    75   3e-12
ref|YP_004353888.1| sugar ABC transporter [Pseudomonas brassicac...    75   3e-12
ref|NP_792802.1| D-xylose ABC transporter permease [Pseudomonas ...    75   3e-12
gb|EGH32622.1| inner-membrane translocator [Pseudomonas syringae...    75   3e-12

>ref|YP_002871906.1| xylose ABC transporter permease [Pseudomonas fluorescens SBW25]
 emb|CAY48533.1| xylose ABC transport system, permease protein [Pseudomonas
           fluorescens SBW25]
          Length = 378

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 46/53 (86%)

Query: 1   VTHNLPLPLNLFLVLLLGLLLGLFNGYLTAYMRIPSFIVGLGGMLAFRGVLLG 53
           V +++PL  NL LV L GL++GL NGY+TAY+RIPSFIVGLGGMLAFRG+LLG
Sbjct: 87  VVYHIPLLANLSLVALCGLMIGLANGYMTAYLRIPSFIVGLGGMLAFRGILLG 139


>ref|ZP_07774804.1| simple sugar transport system permease protein [Pseudomonas
           fluorescens WH6]
 gb|EFQ64085.1| simple sugar transport system permease protein [Pseudomonas
           fluorescens WH6]
          Length = 378

 Score = 75.5 bits (184), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 46/53 (86%)

Query: 1   VTHNLPLPLNLFLVLLLGLLLGLFNGYLTAYMRIPSFIVGLGGMLAFRGVLLG 53
           V +++PL  NL LV L GL++GL NGY+TAY+RIPSFIVGLGGMLAFRG+LLG
Sbjct: 87  VVYHIPLLANLSLVALCGLMIGLANGYMTAYLRIPSFIVGLGGMLAFRGILLG 139


>ref|YP_004353888.1| sugar ABC transporter [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gb|AEA68884.1| Monosaccharide-transporting ATPase (D-xylose ABC transporter,
           permease component) [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 378

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 46/53 (86%)

Query: 1   VTHNLPLPLNLFLVLLLGLLLGLFNGYLTAYMRIPSFIVGLGGMLAFRGVLLG 53
           V +++PL  NL LV L GL++GL NGY+TAY+RIPSFIVGLGGMLAFRGVLLG
Sbjct: 87  VVYHIPLLANLSLVALCGLVIGLGNGYMTAYLRIPSFIVGLGGMLAFRGVLLG 139


>ref|NP_792802.1| D-xylose ABC transporter permease [Pseudomonas syringae pv. tomato
           str. DC3000]
 gb|AAO56497.1| D-xylose ABC transporter, permease protein [Pseudomonas syringae
           pv. tomato str. DC3000]
 gb|EGH95464.1| D-xylose ABC transporter, permease protein [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 378

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/53 (71%), Positives = 46/53 (86%)

Query: 1   VTHNLPLPLNLFLVLLLGLLLGLFNGYLTAYMRIPSFIVGLGGMLAFRGVLLG 53
           V +++PL  NL LV L GL++GL NGY+TAY+RIPSFIVGLGGMLAFRG+LLG
Sbjct: 87  VVYHVPLLANLSLVALCGLMIGLANGYMTAYLRIPSFIVGLGGMLAFRGILLG 139


>gb|EGH32622.1| inner-membrane translocator [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 378

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 46/53 (86%)

Query: 1   VTHNLPLPLNLFLVLLLGLLLGLFNGYLTAYMRIPSFIVGLGGMLAFRGVLLG 53
           V +++PL  NL +V L GLL+GL NGY+TAY+RIPSFIVGLGGMLAFRGVLLG
Sbjct: 87  VVYHVPLLANLSVVALCGLLIGLANGYMTAYLRIPSFIVGLGGMLAFRGVLLG 139